Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Forward (+)

1101671 .. 1113175

Gene Structure 11505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG013000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGACAGTCTATCCTATGCAGCACCCAGGAGCCAATCAAATAATCCCTATTTCTTTGAGTACTCCTGTTCTCCAAAACAATCTTTTTGGGCAGAAAAACATGGTTGGTTCAACAATAAAACCACAGCCGCTTGCAGGAGTTCCAATTCTAACCCCTGTATCTGCTCTTCCGTCTAAAAGTTCGGTAGTTGGTACCACTGATCTCAGGAATGCATCCAATTCTTCAGGCGTGCCTGCTCAGTTAACAATTTTCTATGCTGGTACCGTGAATGTTTACCATGATATATCTCCTGAGAAGGCCCAGGCTATTATGTTGCTGGCTGGAAATGGATCTTCTCCAGCTCATAGTAAGCTGCCTTCCACAGCTCAAGTGCAAACACCATTCCCTAGTCCTTCCACAGGTGATGGTTTCTTTAGGAACCAGTCTCATATTGCATCATCAATCTCTGGCCTTGCAAGCCCTCTTTCTGTGACGTCACATGCTAGTTCTCGCCCCAGAGGAGCATTTAGTAGCAGCAACGCTTTAACTGTATCAAAACCAGTAGCAACTTCAGTATCTTCAATCAATCACTCAGAGCCTTCAAAAGTGGCAGCACAATCTGTTATGACAAACCTCATTCCAGCAGTACCTGTGCCTCAAGCTCGTAAAGCATCCTTGGCTCGGTTTTTTGAGAAGCGCAAGGAGAGGATGACAATCACATTGCCATACAATCTCAGCAAAAAATCTCCAGACTGCAGCACACCAGGTTCCGAGGGCTCTTTTTCAACTCTTCTGGTTCCTGTCCTCCCCAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

265

Amino Acids

27.65

Weight (kDa)

10.15

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	78 - 108	1.4e-16	tify domain
Jas_motif	PF09425	212 - 236	2.3e-11	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	476
Acc65I	GGTACC	2 cut(s)	191, 260
AccB1I	GGYRCC	2 cut(s)	191, 260
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	207, 534
AcyI	GRCGYC	1 cut(s)	473
AfaI	GTAC	4 cut(s)	61, 193, 262, 627
AfiI	CCNNNNNNNGG	3 cut(s)	134, 398, 660
AgsI	TTSAA	4 cut(s)	111, 561, 582, 765
AjnI	CCWGG	3 cut(s)	25, 300, 742
AluBI	AGCT	4 cut(s)	341, 352, 365, 641
AluI	AGCT	4 cut(s)	341, 352, 365, 641
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	2 cut(s)	297, 448
ApeKI	GCWGC	5 cut(s)	19, 352, 513, 590, 735
Asp718I	GGTACC	2 cut(s)	191, 260
AspLEI	GCGC	1 cut(s)	678
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	413
BaeI	ACNNNNGTAYC	4 cut(s)	141, 174, 537, 570
BanI	GGYRCC	2 cut(s)	191, 260
BanII	GRGCYC	1 cut(s)	758
BarI	GAAGNNNNNNTAC	4 cut(s)	150, 182, 340, 372
BbvI	GCAGC	5 cut(s)	31, 339, 525, 602, 747
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	3 cut(s)	27, 302, 744
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	2 cut(s)	387, 483
BfmI	CTRYAG	1 cut(s)	733
BisI	GCNGC	6 cut(s)	20, 128, 353, 514, 591, 736
BlsI	GCNGC	6 cut(s)	21, 129, 354, 515, 592, 737
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	3 cut(s)	27, 302, 744
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	6 cut(s)	31, 193, 262, 419, 748, 777
BmrFI	CCNGG	3 cut(s)	27, 302, 744
BmsI	GCATC	3 cut(s)	221, 443, 659
BpmI	CTGGAG	2 cut(s)	321, 711
BpuEI	CTTGAG	2 cut(s)	351, 621
BsaBI	GATNNNNATC	1 cut(s)	692
BsaHI	GRCGYC	1 cut(s)	473
BsaJI	CCNNGG	4 cut(s)	25, 300, 654, 750
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 398, 660
Bse1I	ACTGG	2 cut(s)	421, 539
Bse3DI	GCAATG	1 cut(s)	698
Bse8I	GATNNNNATC	1 cut(s)	692
BseBI	CCWGG	3 cut(s)	27, 302, 744
BseDI	CCNNGG	4 cut(s)	25, 300, 654, 750
BseGI	GGATG	3 cut(s)	212, 650, 693
BseJI	GATNNNNATC	1 cut(s)	692
BseLI	CCNNNNNNNGG	3 cut(s)	134, 398, 660
BseMI	GCAATG	1 cut(s)	698
BseMII	CTCAG	5 cut(s)	217, 251, 282, 585, 727
BseNI	ACTGG	2 cut(s)	421, 539
BseRI	GAGGAG	1 cut(s)	513
BseXI	GCAGC	5 cut(s)	31, 339, 525, 602, 747
BshFI	GGCC	2 cut(s)	299, 450
BshNI	GGYRCC	2 cut(s)	191, 260
BslI	CCNNNNNNNGG	3 cut(s)	134, 398, 660
BsmAI	GTCTC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	299, 450
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp143I	GATC	2 cut(s)	199, 329
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	2 cut(s)	299, 450
BspCNI	CTCAG	5 cut(s)	216, 250, 283, 584, 726
BspLI	GGNNCC	6 cut(s)	31, 193, 262, 419, 748, 777
BspMAI	CTGCAG	1 cut(s)	737
BspPI	GGATC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	171
BspT107I	GGYRCC	2 cut(s)	191, 260
BsrDI	GCAATG	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	421, 539
BssECI	CCNNGG	4 cut(s)	25, 300, 654, 750
BssMI	GATC	2 cut(s)	199, 329
BssNI	GRCGYC	1 cut(s)	473
BssT1I	CCWWGG	1 cut(s)	654
Bst2UI	CCWGG	3 cut(s)	27, 302, 744
Bst4CI	ACNGT	3 cut(s)	7, 265, 529
Bst6I	CTCTTC	2 cut(s)	171, 774
BstACI	GRCGYC	1 cut(s)	473
BstC8I	GCNNGC	5 cut(s)	132, 230, 234, 318, 457
BstDEI	CTNAG	5 cut(s)	203, 237, 291, 571, 713
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	3 cut(s)	212, 650, 693
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	2 cut(s)	202, 332
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	2 cut(s)	199, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	456, 647, 656
BstNI	CCWGG	3 cut(s)	27, 302, 744
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	25, 300, 742
BstSFI	CTRYAG	1 cut(s)	733
BstV1I	GCAGC	5 cut(s)	31, 339, 525, 602, 747
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	299, 450
BtsCI	GGATG	3 cut(s)	212, 650, 693
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	5 cut(s)	132, 230, 234, 318, 457
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	1 cut(s)	678
Cfr13I	GGNCC	1 cut(s)	298
CsiI	ACCWGGT	1 cut(s)	742
Csp6I	GTAC	4 cut(s)	60, 192, 261, 626
CviAII	CATG	3 cut(s)	100, 278, 479
CviQI	GTAC	4 cut(s)	60, 192, 261, 626
DdeI	CTNAG	5 cut(s)	203, 237, 291, 571, 713
DpnI	GATC	2 cut(s)	201, 331
DpnII	GATC	2 cut(s)	199, 329
Eam1104I	CTCTTC	2 cut(s)	171, 774
EarI	CTCTTC	2 cut(s)	171, 774
Eco130I	CCWWGG	1 cut(s)	654
Eco24I	GRGCYC	1 cut(s)	758
Eco57I	CTGAAG	2 cut(s)	207, 534
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoRII	CCWGG	3 cut(s)	25, 300, 742
EcoT14I	CCWWGG	1 cut(s)	654
EcoT22I	ATGCAT	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	1 cut(s)	654
FaeI	CATG	3 cut(s)	103, 281, 482
FatI	CATG	3 cut(s)	99, 277, 478
Fnu4HI	GCNGC	6 cut(s)	20, 128, 353, 514, 591, 736
FokI	GGATG	3 cut(s)	199, 637, 700
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	6 cut(s)	20, 128, 353, 514, 591, 736
FspBI	CTAG	2 cut(s)	387, 483
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	6 cut(s)	20, 128, 353, 514, 591, 736
GsuI	CTGGAG	2 cut(s)	321, 711
HaeIII	GGCC	2 cut(s)	299, 450
HhaI	GCGC	1 cut(s)	678
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	3 cut(s)	103, 281, 482
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HpaI	GTTAAC	1 cut(s)	243
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	2 cut(s)	243, 274
Hpy188I	TCNGA	2 cut(s)	574, 751
Hpy188III	TCNNGA	3 cut(s)	205, 290, 728
Hpy8I	GTNNAC	2 cut(s)	243, 274
HpyAV	CCTTC	4 cut(s)	289, 366, 402, 588
HpyCH4III	ACNGT	3 cut(s)	7, 265, 529
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	7 cut(s)	19, 134, 212, 373, 434, 455, 735
HpyF10VI	GCNNNNNNNGC	3 cut(s)	456, 647, 656
HpyF3I	CTNAG	5 cut(s)	203, 237, 291, 571, 713
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	3 cut(s)	103, 281, 482
HspAI	GCGC	1 cut(s)	676
KpnI	GGTACC	2 cut(s)	195, 264
KspAI	GTTAAC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	199, 329
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	29, 500
Lsp1109I	GCAGC	5 cut(s)	31, 339, 525, 602, 747
LweI	GCATC	3 cut(s)	221, 443, 659
MabI	ACCWGGT	1 cut(s)	742
MaeI	CTAG	2 cut(s)	387, 483
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	469, 474
MalI	GATC	2 cut(s)	201, 331
MboI	GATC	2 cut(s)	199, 329
MboII	GAAGA	5 cut(s)	158, 213, 324, 549, 761
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	758
MluCI	AATT	3 cut(s)	144, 217, 246
MnlI	CCTC	7 cut(s)	471, 491, 623, 645, 678, 745, 794
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	2 cut(s)	242, 524
MspR9I	CCNGG	3 cut(s)	27, 302, 744
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	3 cut(s)	27, 302, 744
MwoI	GCNNNNNNNGC	3 cut(s)	456, 647, 656
NdeII	GATC	2 cut(s)	199, 329
NlaIII	CATG	3 cut(s)	103, 281, 482
NlaIV	GGNNCC	6 cut(s)	31, 193, 262, 419, 748, 777
NmuCI	GTSAC	2 cut(s)	469, 474
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	214
PkrI	GCNGC	6 cut(s)	21, 129, 354, 515, 592, 737
Psp6I	CCWGG	3 cut(s)	25, 300, 742
PspGI	CCWGG	3 cut(s)	25, 300, 742
PspN4I	GGNNCC	6 cut(s)	31, 193, 262, 419, 748, 777
PspPI	GGNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	4 cut(s)	61, 193, 262, 627
RsaNI	GTAC	4 cut(s)	60, 192, 261, 626
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	242, 524
SatI	GCNGC	6 cut(s)	20, 128, 353, 514, 591, 736
Sau3AI	GATC	2 cut(s)	199, 329
Sau96I	GGNCC	1 cut(s)	298
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	27, 302, 744
SduI	GDGCHC	1 cut(s)	758
SetI	ASST	9 cut(s)	343, 354, 367, 403, 476, 615, 631, 643, 748
SexAI	ACCWGGT	1 cut(s)	742
SfaNI	GCATC	3 cut(s)	221, 443, 659
SfcI	CTRYAG	1 cut(s)	733
SmlI	CTYRAG	2 cut(s)	366, 636
SmoI	CTYRAG	2 cut(s)	366, 636
Sse9I	AATT	3 cut(s)	144, 217, 246
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	387, 483
StyD4I	CCNGG	3 cut(s)	25, 300, 742
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	3 cut(s)	7, 265, 529
TaiI	ACGT	1 cut(s)	476
TasI	AATT	3 cut(s)	144, 217, 246
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	242, 524
Tru9I	TTAA	2 cut(s)	242, 524
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	469, 474
TseI	GCWGC	5 cut(s)	19, 352, 513, 590, 735
Tsp45I	GTSAC	2 cut(s)	469, 474
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	202
XagI	CCTNNNNNAGG	1 cut(s)	396
XceI	RCATGY	1 cut(s)	482
XspI	CTAG	2 cut(s)	387, 483
ZraI	GACGTC	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.