Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Forward (+)

63489949 .. 63493434

Gene Structure 3486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGATGGAGAGAGATTTCATGGGTTTGAGCTCGAAAGAGTCGGTGGCTGTGATCAAGGAGGAGAATAATGACGATGCTTGCAGAGACTCTGGTGGGTTGACCAGAGGTGCTGGTTTGAATTGGCCCTTCTCAAACAAGGTCTCTGCAATTCCTCATCATTTGATGTCTTTCAAAGGTGCTCAAGAAGGTAAGACTCAAAAGATGGTACCTGAGTCCTTCTTGTCTTCTGGATTTATGCCCGTCTCAACTTCAGACGCATTTGATCCTTGTCAGAAACGACCTACATGTGATGCACAGAAGTACTTCAATCACGATAGGCAAGGTGGCACTCACTTTACCCTGACAGCTTATCCCATGCAACATGATGTGCACTCTGTACACCGTCCTTATGACGTGAAGATGATTTCAGTTTCCAATCAAGGTATTTCTGTTCCTATGGGCAATCCATACTTGAAGAATCATTGTGCATCTATGGGTCAGAATTTTGCTGTTACTACCACCAAGCAACAATTATTTGGAGGAATTCCTGTTACTACTCCATATTCAGTTCCTCCAAGTTCAGGGTCCATTGTTGGAACCACTGAACCATGGAACAACGTCAAGACATGTGGGTCTCCTTCTCAGATGACAATCTTCTATGCTGGTAGTGTGAATGTCTATCATGATATCTCCCCTGAGAAGGCTCAGGCTATGATGATTTTAGCTCAGAATGGTTCTTCCATCCCTTTGAATGGTGCACACTCAAAAGCTGAAGCACCAAGAGCAAAGTTGGCCGCGGAAGATGGTGTTCCAGTGAATCAGACTATAAATACACCACCTTCTGCTTTTCCTAGTCCCTTATCTGTTTCTTCACATACTGGTACCCAATCAGTAAGTGGATCCACAAGCACTGATGAACTGATGGCAGCTAAAACCACAGGGCTTCCAACGACTCCTGTTAGTAAAGTGGAGCCTCCAAAAACAGCAAATGCAGTTAAATCTGTTACTGCAACGTCTATGGTTCATTCTGCTATTCCACAAGCTCGTAAAGCATCCTTGGCTCGATTTTTAGGGAAACGCAAGGAAAGGGTAATAAATTCAGCACCATACAACTTGAGCAAGAAATCTGCAGAAGGCAGCAACCCAGAATCTAATGGAATGAATTCCTCTGCAAGCAAAGGAGAACAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

390

Amino Acids

41.54

Weight (kDa)

9.05

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	205 - 235	8.6e-14	tify domain
Jas_motif	PF09425	339 - 363	1.5e-12	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	610
Acc65I	GGTACC	2 cut(s)	205, 860
AccB1I	GGYRCC	2 cut(s)	205, 860
AccII	CGCG	1 cut(s)	776
AciI	CCGC	2 cut(s)	774, 776
AclWI	GGATC	3 cut(s)	257, 873, 886
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	4 cut(s)	481, 522, 1075, 1141
AcuI	CTGAAG	2 cut(s)	234, 771
AfaI	GTAC	4 cut(s)	207, 302, 378, 862
AfiI	CCNNNNNNNGG	3 cut(s)	560, 679, 731
AflIII	ACRYGT	2 cut(s)	284, 605
AgsI	TTSAA	5 cut(s)	118, 172, 307, 454, 730
AjiI	CACGTC	1 cut(s)	394
AluBI	AGCT	6 cut(s)	30, 347, 704, 749, 908, 1022
AluI	AGCT	6 cut(s)	30, 347, 704, 749, 908, 1022
Alw21I	GWGCWC	4 cut(s)	32, 181, 372, 739
Alw26I	GTCTC	4 cut(s)	78, 145, 247, 618
Alw44I	GTGCAC	2 cut(s)	368, 735
AlwI	GGATC	3 cut(s)	257, 873, 886
AoxI	GGCC	2 cut(s)	122, 771
ApaLI	GTGCAC	2 cut(s)	368, 735
ApeKI	GCWGC	2 cut(s)	905, 1116
ApoI	RAATTY	4 cut(s)	481, 522, 1075, 1141
Asp700I	GAANNNNTTC	2 cut(s)	302, 1141
Asp718I	GGTACC	2 cut(s)	205, 860
AspS9I	GGNCC	2 cut(s)	123, 564
AvaII	GGWCC	1 cut(s)	564
BaeGI	GKGCMC	2 cut(s)	372, 739
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BamHI	GGATCC	1 cut(s)	878
BanI	GGYRCC	2 cut(s)	205, 860
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	4 cut(s)	32, 181, 372, 739
BbvI	GCAGC	2 cut(s)	917, 1128
BccI	CCATC	4 cut(s)	196, 728, 776, 895
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	4 cut(s)	78, 145, 247, 618
BfaI	CTAG	1 cut(s)	831
BfmI	CTRYAG	1 cut(s)	1107
BisI	GCNGC	3 cut(s)	774, 906, 1117
BlsI	GCNGC	3 cut(s)	775, 907, 1118
BmcAI	AGTACT	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	564
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	123, 564
BmiI	GGNNCC	6 cut(s)	207, 565, 577, 862, 880, 951
BmsI	GCATC	4 cut(s)	64, 280, 476, 1040
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	165, 1114
BsaBI	GATNNNNATC	1 cut(s)	629
BsaI	GGTCTC	2 cut(s)	145, 618
BsaJI	CCNNGG	3 cut(s)	587, 774, 1035
Bsc4I	CCNNNNNNNGG	3 cut(s)	560, 679, 731
Bse1I	ACTGG	2 cut(s)	791, 862
Bse8I	GATNNNNATC	1 cut(s)	629
BseDI	CCNNGG	3 cut(s)	587, 774, 1035
BseGI	GGATG	2 cut(s)	720, 1031
BseJI	GATNNNNATC	1 cut(s)	629
BseLI	CCNNNNNNNGG	3 cut(s)	560, 679, 731
BseMII	CTCAG	5 cut(s)	201, 635, 666, 698, 719
BseNI	ACTGG	2 cut(s)	791, 862
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	2 cut(s)	372, 739
BseXI	GCAGC	2 cut(s)	917, 1128
Bsh1236I	CGCG	1 cut(s)	776
BshFI	GGCC	2 cut(s)	124, 773
BshNI	GGYRCC	2 cut(s)	205, 860
BsiHKAI	GWGCWC	4 cut(s)	32, 181, 372, 739
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	3 cut(s)	560, 679, 731
BsmAI	GTCTC	4 cut(s)	78, 145, 247, 618
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	819
BsnI	GGCC	2 cut(s)	124, 773
Bso31I	GGTCTC	2 cut(s)	145, 618
Bsp1286I	GDGCHC	4 cut(s)	32, 181, 372, 739
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	51, 262, 878
Bsp19I	CCATGG	1 cut(s)	587
BspACI	CCGC	2 cut(s)	774, 776
BspANI	GGCC	2 cut(s)	124, 773
BspCNI	CTCAG	5 cut(s)	202, 634, 667, 697, 718
BspFNI	CGCG	1 cut(s)	776
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	6 cut(s)	207, 565, 577, 862, 880, 951
BspMAI	CTGCAG	1 cut(s)	1111
BspPI	GGATC	3 cut(s)	257, 873, 886
BspT107I	GGYRCC	2 cut(s)	205, 860
BspTNI	GGTCTC	2 cut(s)	145, 618
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	791, 862
BssECI	CCNNGG	3 cut(s)	587, 774, 1035
BssMI	GATC	3 cut(s)	51, 262, 878
BssT1I	CCWWGG	2 cut(s)	587, 1035
Bst4CI	ACNGT	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	79, 1153
BstDEI	CTNAG	5 cut(s)	210, 621, 675, 684, 705
BstDSI	CCRYGG	2 cut(s)	587, 774
BstF5I	GGATG	2 cut(s)	720, 1031
BstFNI	CGCG	1 cut(s)	776
BstKTI	GATC	3 cut(s)	54, 265, 881
BstMAI	GTCTC	4 cut(s)	78, 145, 247, 618
BstMBI	GATC	3 cut(s)	51, 262, 878
BstMWI	GCNNNNNNNGC	4 cut(s)	761, 770, 1028, 1037
BstNSI	RCATGY	2 cut(s)	288, 609
BstSFI	CTRYAG	1 cut(s)	1107
BstSLI	GKGCMC	2 cut(s)	372, 739
BstUI	CGCG	1 cut(s)	776
BstV1I	GCAGC	2 cut(s)	917, 1128
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	878
BsuRI	GGCC	2 cut(s)	124, 773
BtgI	CCRYGG	2 cut(s)	587, 774
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	720, 1031
BtsIMutI	CAGTG	3 cut(s)	579, 798, 888
Cac8I	GCNNGC	2 cut(s)	79, 1153
CciI	TCATGA	1 cut(s)	661
Cfr13I	GGNCC	2 cut(s)	123, 564
Cfr42I	CCGCGG	1 cut(s)	777
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	4 cut(s)	206, 301, 377, 861
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	7 cut(s)	19, 285, 355, 362, 588, 606, 662
CviQI	GTAC	4 cut(s)	206, 301, 377, 861
DdeI	CTNAG	5 cut(s)	210, 621, 675, 684, 705
DpnI	GATC	3 cut(s)	53, 264, 880
DpnII	GATC	3 cut(s)	51, 262, 878
DrdI	GACNNNNNNGTC	1 cut(s)	610
DseDI	GACNNNNNNGTC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	771
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	587, 1035
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	2 cut(s)	145, 618
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	564
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	234, 771
EcoICRI	GAGCTC	1 cut(s)	30
EcoRI	GAATTC	2 cut(s)	522, 1141
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	2 cut(s)	587, 1035
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	2 cut(s)	587, 1035
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	7 cut(s)	22, 288, 358, 365, 591, 609, 665
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	7 cut(s)	18, 284, 354, 361, 587, 605, 661
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	774, 906, 1117
FokI	GGATG	2 cut(s)	707, 1018
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	774, 906, 1117
FspBI	CTAG	1 cut(s)	831
GluI	GCNGC	3 cut(s)	774, 906, 1117
HaeIII	GGCC	2 cut(s)	124, 773
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	7 cut(s)	22, 288, 358, 365, 591, 609, 665
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	8 cut(s)	38, 86, 193, 212, 457, 796, 931, 1127
Hpy166II	GTNNAC	4 cut(s)	99, 370, 379, 737
Hpy188I	TCNGA	6 cut(s)	253, 273, 480, 624, 708, 801
Hpy188III	TCNNGA	5 cut(s)	182, 228, 311, 601, 662
Hpy8I	GTNNAC	4 cut(s)	99, 370, 379, 737
HpyAV	CCTTC	7 cut(s)	136, 179, 226, 627, 673, 828, 1106
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	3 cut(s)	393, 597, 992
HpyF10VI	GCNNNNNNNGC	4 cut(s)	761, 770, 1028, 1037
HpyF3I	CTNAG	5 cut(s)	210, 621, 675, 684, 705
HpySE526I	ACGT	3 cut(s)	393, 597, 992
Hsp92II	CATG	7 cut(s)	22, 288, 358, 365, 591, 609, 665
KpnI	GGTACC	2 cut(s)	209, 864
Ksp22I	TGATCA	1 cut(s)	51
KspI	CCGCGG	1 cut(s)	777
Kzo9I	GATC	3 cut(s)	51, 262, 878
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	2 cut(s)	917, 1128
LweI	GCATC	4 cut(s)	64, 280, 476, 1040
MaeI	CTAG	1 cut(s)	831
MaeII	ACGT	3 cut(s)	393, 597, 992
MaeIII	GTNAC	3 cut(s)	490, 529, 982
MalI	GATC	3 cut(s)	53, 264, 880
MboI	GATC	3 cut(s)	51, 262, 878
MboII	GAAGA	7 cut(s)	216, 409, 466, 625, 708, 791, 840
MflI	RGATCY	1 cut(s)	878
MhlI	GDGCHC	4 cut(s)	32, 181, 372, 739
MluCI	AATT	7 cut(s)	118, 147, 481, 509, 522, 1075, 1141
MlyI	GAGTC	5 cut(s)	47, 80, 187, 221, 925
MmeI	TCCRAC	2 cut(s)	553, 950
MnlI	CCTC	7 cut(s)	52, 98, 162, 512, 561, 963, 1156
MroXI	GAANNNNTTC	2 cut(s)	302, 1141
MseI	TTAA	1 cut(s)	975
MspA1I	CMGCKG	1 cut(s)	776
MvnI	CGCG	1 cut(s)	776
MwoI	GCNNNNNNNGC	4 cut(s)	761, 770, 1028, 1037
NcoI	CCATGG	1 cut(s)	587
NdeII	GATC	3 cut(s)	51, 262, 878
NlaIII	CATG	7 cut(s)	22, 288, 358, 365, 591, 609, 665
NlaIV	GGNNCC	6 cut(s)	207, 565, 577, 862, 880, 951
NspI	RCATGY	2 cut(s)	288, 609
PagI	TCATGA	1 cut(s)	661
PciI	ACATGT	2 cut(s)	284, 605
PdmI	GAANNNNTTC	2 cut(s)	302, 1141
PfeI	GAWTC	3 cut(s)	457, 796, 1127
PkrI	GCNGC	3 cut(s)	775, 907, 1118
PleI	GAGTC	5 cut(s)	46, 80, 187, 220, 925
PpsI	GAGTC	5 cut(s)	46, 80, 187, 220, 925
PscI	ACATGT	2 cut(s)	284, 605
Psp124BI	GAGCTC	1 cut(s)	32
PspN4I	GGNNCC	6 cut(s)	207, 565, 577, 862, 880, 951
PspPI	GGNCC	2 cut(s)	123, 564
PstI	CTGCAG	1 cut(s)	1111
PsuI	RGATCY	1 cut(s)	878
RsaI	GTAC	4 cut(s)	207, 302, 378, 862
RsaNI	GTAC	4 cut(s)	206, 301, 377, 861
SacI	GAGCTC	1 cut(s)	32
SacII	CCGCGG	1 cut(s)	777
SaqAI	TTAA	1 cut(s)	975
SatI	GCNGC	3 cut(s)	774, 906, 1117
Sau3AI	GATC	3 cut(s)	51, 262, 878
Sau96I	GGNCC	2 cut(s)	123, 564
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	5 cut(s)	47, 80, 187, 221, 925
SduI	GDGCHC	4 cut(s)	32, 181, 372, 739
SfaNI	GCATC	4 cut(s)	64, 280, 476, 1040
SfcI	CTRYAG	1 cut(s)	1107
Sfr303I	CCGCGG	1 cut(s)	777
SgrBI	CCGCGG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	180, 1093
SmoI	CTYRAG	2 cut(s)	180, 1093
Sse9I	AATT	7 cut(s)	118, 147, 481, 509, 522, 1075, 1141
SsiI	CCGC	2 cut(s)	774, 776
SspMI	CTAG	1 cut(s)	831
SstI	GAGCTC	1 cut(s)	32
StyI	CCWWGG	2 cut(s)	587, 1035
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	3 cut(s)	396, 600, 995
TaqI	TCGA	2 cut(s)	32, 1042
TasI	AATT	7 cut(s)	118, 147, 481, 509, 522, 1075, 1141
TatI	WGTACW	2 cut(s)	300, 376
TauI	GCSGC	1 cut(s)	776
TfiI	GAWTC	3 cut(s)	457, 796, 1127
Tru1I	TTAA	1 cut(s)	975
Tru9I	TTAA	1 cut(s)	975
TscAI	CASTG	3 cut(s)	586, 798, 895
TseI	GCWGC	2 cut(s)	905, 1116
TspDTI	ATGAA	4 cut(s)	7, 909, 992, 1154
TspRI	CASTG	3 cut(s)	586, 798, 895
VneI	GTGCAC	2 cut(s)	368, 735
VpaK11BI	GGWCC	1 cut(s)	564
XapI	RAATTY	4 cut(s)	481, 522, 1075, 1141
XceI	RCATGY	2 cut(s)	288, 609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XmnI	GAANNNNTTC	2 cut(s)	302, 1141
XspI	CTAG	1 cut(s)	831
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.