Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000425.1

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Forward (+)

62913 .. 66608

Gene Structure 3696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000425.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atggagagggatttcttgggtttgacttcaaagaagacctgtgtgactgtgaaagatgaagccaatgatgaacgcaagaattcagtagtaacaagaagctcaaattcagggatgcagtggtcgttttcaaacaaggtttctgcacttcctcagttcctatctttcacggctcctcaagaagagatgtcgagaaaaggtgttcatgacacatcttcattcatgactatatcaactgctgatgcttttgaatctagccggaagtcgtcctccggtgtaatccagaaaagtttcattcatgataagcaagctggaaaccactatgcaatgacagtctatcctatgcagcacccaggagccaatcaaataatccctatttctttgagtactcctgttctccaaaacaatctttttgggcagaaaaacatggttggttcaacaataaaaccacagccgcttgcaggagttccaattctaacccctgtatctgctcctccgtctaaaagttcggtagttggtaccactgatctgaggaatgcatccaattcttcaggcgtgcctgctcagttaacaattttctatgctggtaccgtgaatgtttaccatgatatatctcctgagaaggcccaggctattatgttgctggctggaaatggatcttctccagctcatagtaagctgccttccacagctcaagtgcaaacaccattccctagtccttccacaggtgatggtttctttaggaaccagtctcatattgcatcatcaatctctggccttgcaagccctctttctgtgacgtcacatgctagttctcgccccagaggagcatttagtagcagcaacactttaactgtatcaaaaccagtatcaacttcagtatcttcaatcaatcactcagagccttcaaaagtggcagcacaatctgttatgacaaacctcattccagcagtacctgtgcctcaagctcgtaaagcatccttggctcggttttttgagaagcgcaaggagaggatgacaagcacattgccatacaatctcagcaaaaaatctccagactgcagcacaccaggttccgagggcgtgaccttctctttcaactcttctggttcctgtcctccccaagccataaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

377

Amino Acids

39.97

Weight (kDa)

9.75

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	800
Acc65I	GGTACC	2 cut(s)	515, 584
AccB1I	GGYRCC	2 cut(s)	515, 584
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	1 cut(s)	661
AcsI	RAATTY	2 cut(s)	79, 103
AcuI	CTGAAG	2 cut(s)	531, 858
AcyI	GRCGYC	1 cut(s)	797
AfaI	GTAC	4 cut(s)	385, 517, 586, 951
AfiI	CCNNNNNNNGG	3 cut(s)	458, 722, 984
AgsI	TTSAA	7 cut(s)	30, 129, 248, 435, 885, 906, 1096
AjnI	CCWGG	3 cut(s)	349, 624, 1066
AluBI	AGCT	6 cut(s)	99, 308, 665, 676, 689, 965
AluI	AGCT	6 cut(s)	99, 308, 665, 676, 689, 965
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	1 cut(s)	661
AlwNI	CAGNNNCTG	1 cut(s)	953
AoxI	GGCC	2 cut(s)	621, 772
ApeKI	GCWGC	5 cut(s)	343, 676, 837, 914, 1059
ApoI	RAATTY	2 cut(s)	79, 103
Asp700I	GAANNNNTTC	1 cut(s)	287
Asp718I	GGTACC	2 cut(s)	515, 584
AspLEI	GCGC	1 cut(s)	1002
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	1 cut(s)	737
BaeI	ACNNNNGTAYC	4 cut(s)	465, 498, 861, 894
BanI	GGYRCC	2 cut(s)	515, 584
BarI	GAAGNNNNNNTAC	2 cut(s)	664, 696
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	5 cut(s)	355, 663, 849, 926, 1071
BccI	CCATC	1 cut(s)	722
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	3 cut(s)	351, 626, 1068
BcoDI	GTCTC	1 cut(s)	753
BfaI	CTAG	3 cut(s)	252, 711, 807
BfmI	CTRYAG	1 cut(s)	1057
BisI	GCNGC	6 cut(s)	344, 452, 677, 838, 915, 1060
BlsI	GCNGC	6 cut(s)	345, 453, 678, 839, 916, 1061
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	3 cut(s)	351, 626, 1068
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	7 cut(s)	171, 355, 517, 586, 743, 1072, 1108
BmrFI	CCNGG	3 cut(s)	351, 626, 1068
BmsI	GCATC	5 cut(s)	102, 229, 545, 767, 983
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	2 cut(s)	645, 1035
BpuEI	CTTGAG	3 cut(s)	159, 675, 945
BsaHI	GRCGYC	1 cut(s)	797
BsaJI	CCNNGG	4 cut(s)	349, 624, 978, 1074
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	458, 722, 984
Bse1I	ACTGG	2 cut(s)	745, 863
Bse3DI	GCAATG	2 cut(s)	330, 1022
BseBI	CCWGG	3 cut(s)	351, 626, 1068
BseDI	CCNNGG	4 cut(s)	349, 624, 978, 1074
BseGI	GGATG	4 cut(s)	117, 536, 974, 1017
BseLI	CCNNNNNNNGG	3 cut(s)	458, 722, 984
BseMI	GCAATG	2 cut(s)	330, 1022
BseMII	CTCAG	6 cut(s)	164, 518, 575, 606, 909, 1051
BseNI	ACTGG	2 cut(s)	745, 863
BseRI	GAGGAG	3 cut(s)	162, 480, 837
BseXI	GCAGC	5 cut(s)	355, 663, 849, 926, 1071
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	623, 774
BshNI	GGYRCC	2 cut(s)	515, 584
BsiSI	CCGG	2 cut(s)	256, 270
BslI	CCNNNNNNNGG	3 cut(s)	458, 722, 984
BsmAI	GTCTC	1 cut(s)	753
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	623, 774
Bsp143I	GATC	2 cut(s)	523, 653
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	2 cut(s)	623, 774
BspCNI	CTCAG	6 cut(s)	163, 519, 574, 607, 908, 1050
BspHI	TCATGA	3 cut(s)	202, 219, 295
BspLI	GGNNCC	7 cut(s)	171, 355, 517, 586, 743, 1072, 1108
BspMAI	CTGCAG	1 cut(s)	1061
BspPI	GGATC	1 cut(s)	661
BspT107I	GGYRCC	2 cut(s)	515, 584
BsrDI	GCAATG	2 cut(s)	330, 1022
BsrI	ACTGG	2 cut(s)	745, 863
BssECI	CCNNGG	4 cut(s)	349, 624, 978, 1074
BssMI	GATC	2 cut(s)	523, 653
BssNI	GRCGYC	1 cut(s)	797
BssT1I	CCWWGG	1 cut(s)	978
Bst2UI	CCWGG	3 cut(s)	351, 626, 1068
Bst4CI	ACNGT	4 cut(s)	49, 331, 589, 853
Bst6I	CTCTTC	2 cut(s)	174, 1105
BstACI	GRCGYC	1 cut(s)	797
BstC8I	GCNNGC	6 cut(s)	306, 456, 554, 558, 642, 781
BstDEI	CTNAG	6 cut(s)	150, 527, 561, 615, 895, 1037
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	4 cut(s)	117, 536, 974, 1017
BstHHI	GCGC	1 cut(s)	1002
BstKTI	GATC	2 cut(s)	526, 656
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	2 cut(s)	523, 653
BstMWI	GCNNNNNNNGC	3 cut(s)	780, 971, 980
BstNI	CCWGG	3 cut(s)	351, 626, 1068
BstNSI	RCATGY	1 cut(s)	806
BstSCI	CCNGG	3 cut(s)	349, 624, 1066
BstSFI	CTRYAG	1 cut(s)	1057
BstV1I	GCAGC	5 cut(s)	355, 663, 849, 926, 1071
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	653
BsuRI	GGCC	2 cut(s)	623, 774
BtsCI	GGATG	4 cut(s)	117, 536, 974, 1017
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	122, 519
Cac8I	GCNNGC	6 cut(s)	306, 456, 554, 558, 642, 781
CaiI	CAGNNNCTG	1 cut(s)	953
CciI	TCATGA	3 cut(s)	202, 219, 295
CfoI	GCGC	1 cut(s)	1002
Cfr13I	GGNCC	1 cut(s)	622
CsiI	ACCWGGT	1 cut(s)	1066
Csp6I	GTAC	4 cut(s)	384, 516, 585, 950
CviAII	CATG	6 cut(s)	203, 220, 296, 424, 602, 803
CviQI	GTAC	4 cut(s)	384, 516, 585, 950
DdeI	CTNAG	6 cut(s)	150, 527, 561, 615, 895, 1037
DpnI	GATC	2 cut(s)	525, 655
DpnII	GATC	2 cut(s)	523, 653
Eam1104I	CTCTTC	2 cut(s)	174, 1105
EarI	CTCTTC	2 cut(s)	174, 1105
Eco130I	CCWWGG	1 cut(s)	978
Eco57I	CTGAAG	2 cut(s)	531, 858
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	349, 624, 1066
EcoT14I	CCWWGG	1 cut(s)	978
EcoT22I	ATGCAT	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	978
FaeI	CATG	6 cut(s)	206, 223, 299, 427, 605, 806
FatI	CATG	6 cut(s)	202, 219, 295, 423, 601, 802
Fnu4HI	GCNGC	6 cut(s)	344, 452, 677, 838, 915, 1060
FokI	GGATG	4 cut(s)	124, 523, 961, 1024
Fsp4HI	GCNGC	6 cut(s)	344, 452, 677, 838, 915, 1060
FspBI	CTAG	3 cut(s)	252, 711, 807
GlaI	GCGC	1 cut(s)	1001
GluI	GCNGC	6 cut(s)	344, 452, 677, 838, 915, 1060
GsuI	CTGGAG	2 cut(s)	645, 1035
HaeIII	GGCC	2 cut(s)	623, 774
HapII	CCGG	2 cut(s)	256, 270
HhaI	GCGC	1 cut(s)	1002
Hin1I	GRCGYC	1 cut(s)	797
Hin1II	CATG	6 cut(s)	206, 223, 299, 427, 605, 806
Hin6I	GCGC	1 cut(s)	1000
HinP1I	GCGC	1 cut(s)	1000
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	1 cut(s)	248
HpaI	GTTAAC	1 cut(s)	567
HpaII	CCGG	2 cut(s)	256, 270
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	2 cut(s)	567, 598
Hpy188I	TCNGA	3 cut(s)	528, 898, 1075
Hpy188III	TCNNGA	8 cut(s)	176, 189, 203, 220, 280, 296, 614, 1052
Hpy8I	GTNNAC	2 cut(s)	567, 598
HpyAV	CCTTC	5 cut(s)	613, 690, 726, 912, 1096
HpyCH4III	ACNGT	4 cut(s)	49, 331, 589, 853
HpyCH4IV	ACGT	1 cut(s)	797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	780, 971, 980
HpyF3I	CTNAG	6 cut(s)	150, 527, 561, 615, 895, 1037
HpySE526I	ACGT	1 cut(s)	797
Hsp92I	GRCGYC	1 cut(s)	797
Hsp92II	CATG	6 cut(s)	206, 223, 299, 427, 605, 806
HspAI	GCGC	1 cut(s)	1000
KpnI	GGTACC	2 cut(s)	519, 588
KspAI	GTTAAC	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	523, 653
LmnI	GCTCC	4 cut(s)	175, 353, 493, 824
Lsp1109I	GCAGC	5 cut(s)	355, 663, 849, 926, 1071
LweI	GCATC	5 cut(s)	102, 229, 545, 767, 983
MabI	ACCWGGT	1 cut(s)	1066
MaeI	CTAG	3 cut(s)	252, 711, 807
MaeII	ACGT	1 cut(s)	797
MaeIII	GTNAC	5 cut(s)	43, 88, 793, 798, 1081
MalI	GATC	2 cut(s)	525, 655
MboI	GATC	2 cut(s)	523, 653
MboII	GAAGA	7 cut(s)	46, 191, 204, 537, 648, 873, 1092
MflI	RGATCY	1 cut(s)	653
MluCI	AATT	6 cut(s)	79, 103, 468, 541, 570, 1129
Mph1103I	ATGCAT	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	2 cut(s)	566, 848
MspI	CCGG	2 cut(s)	256, 270
MspR9I	CCNGG	3 cut(s)	351, 626, 1068
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	3 cut(s)	351, 626, 1068
MwoI	GCNNNNNNNGC	3 cut(s)	780, 971, 980
NdeII	GATC	2 cut(s)	523, 653
NlaIII	CATG	6 cut(s)	206, 223, 299, 427, 605, 806
NlaIV	GGNNCC	7 cut(s)	171, 355, 517, 586, 743, 1072, 1108
NmuCI	GTSAC	4 cut(s)	43, 793, 798, 1081
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	1 cut(s)	806
PagI	TCATGA	3 cut(s)	202, 219, 295
PctI	GAATGC	1 cut(s)	538
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	6 cut(s)	345, 453, 678, 839, 916, 1061
Psp6I	CCWGG	3 cut(s)	349, 624, 1066
PspGI	CCWGG	3 cut(s)	349, 624, 1066
PspN4I	GGNNCC	7 cut(s)	171, 355, 517, 586, 743, 1072, 1108
PspPI	GGNCC	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	1061
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	1 cut(s)	653
RsaI	GTAC	4 cut(s)	385, 517, 586, 951
RsaNI	GTAC	4 cut(s)	384, 516, 585, 950
SaqAI	TTAA	2 cut(s)	566, 848
SatI	GCNGC	6 cut(s)	344, 452, 677, 838, 915, 1060
Sau3AI	GATC	2 cut(s)	523, 653
Sau96I	GGNCC	1 cut(s)	622
ScaI	AGTACT	1 cut(s)	385
ScrFI	CCNGG	3 cut(s)	351, 626, 1068
SexAI	ACCWGGT	1 cut(s)	1066
SfaNI	GCATC	5 cut(s)	102, 229, 545, 767, 983
SfcI	CTRYAG	1 cut(s)	1057
SmlI	CTYRAG	3 cut(s)	174, 690, 960
SmoI	CTYRAG	3 cut(s)	174, 690, 960
Sse9I	AATT	6 cut(s)	79, 103, 468, 541, 570, 1129
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	3 cut(s)	252, 711, 807
StyD4I	CCNGG	3 cut(s)	349, 624, 1066
StyI	CCWWGG	1 cut(s)	978
TaaI	ACNGT	4 cut(s)	49, 331, 589, 853
TaiI	ACGT	1 cut(s)	800
TaqI	TCGA	1 cut(s)	188
TasI	AATT	6 cut(s)	79, 103, 468, 541, 570, 1129
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	1 cut(s)	454
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	566, 848
Tru9I	TTAA	2 cut(s)	566, 848
TscAI	CASTG	2 cut(s)	122, 526
TseFI	GTSAC	4 cut(s)	43, 793, 798, 1081
TseI	GCWGC	5 cut(s)	343, 676, 837, 914, 1059
Tsp45I	GTSAC	4 cut(s)	43, 793, 798, 1081
TspDTI	ATGAA	7 cut(s)	72, 84, 191, 204, 208, 280, 284
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	122, 526
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	2 cut(s)	79, 103
XceI	RCATGY	1 cut(s)	806
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	3 cut(s)	252, 711, 807
ZraI	GACGTC	1 cut(s)	798
ZrmI	AGTACT	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.