Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Reverse (-)

31407579 .. 31411166

Gene Structure 3588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G331500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAGAGGGATTTCTTGGGTTTGAACTCAAAAGAGTCGGTGTTAGTGGTGAAGGAGGAGATTAATAATGATGGATGCAAAGACTCAGGGTATGCTAGAGGTGCAGGAGGTGCACATTGGCCCTTCTTGAACAAGGTCTCTGCACTTCCTCATTTGATGCCTTTCAAAGCTGCTCAAGATGATAAGACTAAAAAGATGGTATCTGAGTCCTTCCTGTCTTCTGGATTCATGCCTATCTCAACTGCAGATGCATTTGACCATTGTCAAAAACAGGCTCCATGTGAAATTCAGAATTACTTCAATCACGATAGGCAAGATGGCACTCATTTTTCCCTGACAGCTTATCCTATGCAACATGATGTGCATTCCGTTCATCGTCCCCATGATGTGAAGATGATTTCAGTTACCAATCAAGGATTTTCTGTTCCTGTGAGCAACCCTTTCTTCAAGAATCCCTTTGCTACTACTGGTCAGAATTTTGCTGCCACTACCATCAAGCAACAATTGCAGGGAATTCCAGTTACAGCTCCTTACTCAGTTCTTCCAGTTTCAGGGAGCACCGAACCATGGAACAATTCCAAGAACTCTGGGTCTCCTTCACAATTGACAATCTTTTATGCCGGCACTGTGAATGTCTATGATGATATCTCCCCTGAGAAGGTTCAGGCTATGATGCTTTTGGCTGGAAATGTTTCTTCCATCTCCTCTAATGCTGCACAACCAAAAACTCAAGCACCTAGTGCAAAGTTGGCAGTGGAAGATGGTGTTCCTGTGAATCAGCTGACAAATACACCACCATCTGGTCTTTCTAGCCCCTTATCTATTTCTTCACATACTGGTGTCCAGTCAGTAAGTGGATCCACAAACACTGATGAGCTAATGGCACCAAGAACGACTGGACATCCAACCAGTCCTGTTAGCAAAATGGAGCCTCCGAAAATAGTAAATGCAGTTGGATCTGTTGCTGCAACTTCTATGATTCCTTCTGCTGTTCCACAGGCTCGGAAAGCATCCTTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTAATGATTTCCGCCCCGTACAACTTCAGCAAGAAATCTCCAGACTCCAATGGAGTGAATTTCACCCAGCAGGGAGAACAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

378

Amino Acids

40.54

Weight (kDa)

8.31

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	883
AccB7I	CCANNNNNTGG	1 cut(s)	800
AciI	CCGC	1 cut(s)	1059
AclWI	GGATC	3 cut(s)	852, 865, 964
AcsI	RAATTY	4 cut(s)	285, 475, 513, 1105
AcuI	CTGAAG	1 cut(s)	1057
AdeI	CACNNNGTG	1 cut(s)	740
AfaI	GTAC	1 cut(s)	1067
AfiI	CCNNNNNNNGG	4 cut(s)	551, 567, 658, 800
AgsI	TTSAA	5 cut(s)	25, 130, 166, 301, 448
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	5 cut(s)	170, 341, 527, 781, 877
AluI	AGCT	5 cut(s)	170, 341, 527, 781, 877
Alw21I	GWGCWC	2 cut(s)	115, 560
Alw26I	GTCTC	2 cut(s)	142, 597
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	3 cut(s)	852, 865, 964
AoxI	GGCC	1 cut(s)	119
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	4 cut(s)	170, 482, 713, 965
ApoI	RAATTY	4 cut(s)	285, 475, 513, 1105
AseI	ATTAAT	1 cut(s)	63
Asp700I	GAANNNNTTC	2 cut(s)	296, 691
AspLEI	GCGC	1 cut(s)	1038
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	61, 1102
BaeGI	GKGCMC	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	857
BanI	GGYRCC	1 cut(s)	883
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	115, 560
BbvI	GCAGC	4 cut(s)	157, 469, 700, 952
BccI	CCATC	7 cut(s)	65, 190, 311, 500, 707, 755, 805
BcoDI	GTCTC	2 cut(s)	142, 597
BfaI	CTAG	3 cut(s)	96, 738, 810
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	4 cut(s)	171, 483, 714, 966
BlsI	GCNGC	4 cut(s)	172, 484, 715, 967
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	4 cut(s)	276, 859, 885, 930
BmsI	GCATC	5 cut(s)	65, 147, 238, 663, 1019
BoxI	GACNNNNGTC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	1071
BpuEI	CTTGAG	2 cut(s)	159, 714
BsaI	GGTCTC	2 cut(s)	142, 597
BsaJI	CCNNGG	2 cut(s)	566, 1014
Bsc4I	CCNNNNNNNGG	4 cut(s)	551, 567, 658, 800
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	7 cut(s)	472, 518, 545, 841, 844, 901, 909
BseDI	CCNNGG	2 cut(s)	566, 1014
BseGI	GGATG	3 cut(s)	80, 901, 1010
BseLI	CCNNNNNNNGG	4 cut(s)	551, 567, 658, 800
BseMII	CTCAG	4 cut(s)	99, 195, 549, 645
BseNI	ACTGG	7 cut(s)	472, 518, 545, 841, 844, 901, 909
BseRI	GAGGAG	2 cut(s)	71, 694
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	4 cut(s)	157, 469, 700, 952
BseYI	CCCAGC	1 cut(s)	1113
BsgI	GTGCAG	3 cut(s)	123, 126, 699
BshFI	GGCC	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	883
BsiHKAI	GWGCWC	2 cut(s)	115, 560
BsiSI	CCGG	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	4 cut(s)	551, 567, 658, 800
BsmAI	GTCTC	2 cut(s)	142, 597
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	121
Bso31I	GGTCTC	2 cut(s)	142, 597
Bsp1286I	GDGCHC	2 cut(s)	115, 560
Bsp143I	GATC	2 cut(s)	857, 956
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	1 cut(s)	1059
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	4 cut(s)	98, 196, 548, 646
BspLI	GGNNCC	4 cut(s)	276, 859, 885, 930
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	3 cut(s)	852, 865, 964
BspT107I	GGYRCC	1 cut(s)	883
BspTNI	GGTCTC	2 cut(s)	142, 597
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	7 cut(s)	472, 518, 545, 841, 844, 901, 909
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	2 cut(s)	566, 1014
BssMI	GATC	2 cut(s)	857, 956
BssT1I	CCWWGG	2 cut(s)	566, 1014
Bst4CI	ACNGT	1 cut(s)	628
BstAPI	GCANNNNNTGC	3 cut(s)	110, 505, 740
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	4 cut(s)	85, 204, 535, 654
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	3 cut(s)	80, 901, 1010
BstHHI	GCGC	1 cut(s)	1038
BstKTI	GATC	2 cut(s)	860, 959
BstMAI	GTCTC	2 cut(s)	142, 597
BstMBI	GATC	2 cut(s)	857, 956
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 110, 505, 740, 749, 1007, 1016
BstPAI	GACNNNNGTC	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	4 cut(s)	157, 469, 700, 952
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	857, 956
BstYI	RGATCY	2 cut(s)	857, 956
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	3 cut(s)	80, 901, 1010
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	3 cut(s)	624, 759, 867
Cac8I	GCNNGC	1 cut(s)	622
CfoI	GCGC	1 cut(s)	1038
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	1066
CviAII	CATG	5 cut(s)	229, 279, 356, 383, 567
CviQI	GTAC	1 cut(s)	1066
DdeI	CTNAG	4 cut(s)	85, 204, 535, 654
DpnI	GATC	2 cut(s)	859, 958
DpnII	GATC	2 cut(s)	857, 956
DraIII	CACNNNGTG	1 cut(s)	740
EciI	GGCGGA	1 cut(s)	1048
Eco130I	CCWWGG	2 cut(s)	566, 1014
Eco31I	GGTCTC	2 cut(s)	142, 597
Eco32I	GATATC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	1057
EcoRI	GAATTC	1 cut(s)	513
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	566, 1014
EcoT22I	ATGCAT	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	566, 1014
FaeI	CATG	5 cut(s)	232, 282, 359, 386, 570
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	5 cut(s)	228, 278, 355, 382, 566
Fnu4HI	GCNGC	4 cut(s)	171, 483, 714, 966
FokI	GGATG	3 cut(s)	87, 888, 997
Fsp4HI	GCNGC	4 cut(s)	171, 483, 714, 966
FspBI	CTAG	3 cut(s)	96, 738, 810
GlaI	GCGC	1 cut(s)	1037
GluI	GCNGC	4 cut(s)	171, 483, 714, 966
GsaI	CCCAGC	1 cut(s)	1117
GsuI	CTGGAG	1 cut(s)	1071
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	621
HhaI	GCGC	1 cut(s)	1038
Hin1II	CATG	5 cut(s)	232, 282, 359, 386, 570
Hin6I	GCGC	1 cut(s)	1036
HinP1I	GCGC	1 cut(s)	1036
HinfI	GANTC	8 cut(s)	35, 83, 206, 225, 451, 775, 979, 1091
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	2 cut(s)	61, 1102
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	5 cut(s)	205, 291, 474, 936, 1005
Hpy188III	TCNNGA	6 cut(s)	127, 176, 222, 305, 448, 1088
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	6 cut(s)	46, 133, 220, 606, 652, 993
HpyCH4III	ACNGT	1 cut(s)	628
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 110, 505, 740, 749, 1007, 1016
HpyF3I	CTNAG	4 cut(s)	85, 204, 535, 654
Hsp92II	CATG	5 cut(s)	232, 282, 359, 386, 570
HspAI	GCGC	1 cut(s)	1036
KroI	GCCGGC	1 cut(s)	620
KroNI	GCCGGC	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	857, 956
LmnI	GCTCC	4 cut(s)	280, 532, 555, 928
Lsp1109I	GCAGC	4 cut(s)	157, 469, 700, 952
LweI	GCATC	5 cut(s)	65, 147, 238, 663, 1019
MaeI	CTAG	3 cut(s)	96, 738, 810
MaeIII	GTNAC	2 cut(s)	403, 520
MalI	GATC	2 cut(s)	859, 958
MboI	GATC	2 cut(s)	857, 956
MboII	GAAGA	7 cut(s)	210, 403, 436, 533, 687, 770, 819
MfeI	CAATTG	2 cut(s)	503, 602
MflI	RGATCY	2 cut(s)	857, 956
MhlI	GDGCHC	2 cut(s)	115, 560
MluCI	AATT	8 cut(s)	285, 292, 475, 503, 513, 574, 602, 1105
MlyI	GAGTC	4 cut(s)	44, 77, 215, 1085
MmeI	TCCRAC	2 cut(s)	929, 934
MnlI	CCTC	6 cut(s)	49, 92, 101, 159, 715, 942
Mph1103I	ATGCAT	1 cut(s)	253
MroNI	GCCGGC	1 cut(s)	620
MroXI	GAANNNNTTC	2 cut(s)	296, 691
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	837
MspA1I	CMGCKG	1 cut(s)	781
MspI	CCGG	1 cut(s)	621
MunI	CAATTG	2 cut(s)	503, 602
Mva1269I	GAATGC	1 cut(s)	364
MwoI	GCNNNNNNNGC	7 cut(s)	101, 110, 505, 740, 749, 1007, 1016
NaeI	GCCGGC	1 cut(s)	622
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	2 cut(s)	857, 956
NgoMIV	GCCGGC	1 cut(s)	620
NlaIII	CATG	5 cut(s)	232, 282, 359, 386, 570
NlaIV	GGNNCC	4 cut(s)	276, 859, 885, 930
NsiI	ATGCAT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	364
PdiI	GCCGGC	1 cut(s)	622
PdmI	GAANNNNTTC	2 cut(s)	296, 691
PfeI	GAWTC	4 cut(s)	225, 451, 775, 979
PflMI	CCANNNNNTGG	1 cut(s)	800
PkrI	GCNGC	4 cut(s)	172, 484, 715, 967
PleI	GAGTC	4 cut(s)	43, 77, 214, 1085
PpsI	GAGTC	4 cut(s)	43, 77, 214, 1085
PshAI	GACNNNNGTC	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	1113
PspN4I	GGNNCC	4 cut(s)	276, 859, 885, 930
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	2 cut(s)	857, 956
PvuII	CAGCTG	1 cut(s)	781
RsaI	GTAC	1 cut(s)	1067
RsaNI	GTAC	1 cut(s)	1066
RseI	CAYNNNNRTG	1 cut(s)	837
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	4 cut(s)	171, 483, 714, 966
Sau3AI	GATC	2 cut(s)	857, 956
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	4 cut(s)	44, 77, 215, 1085
SduI	GDGCHC	2 cut(s)	115, 560
SfaNI	GCATC	5 cut(s)	65, 147, 238, 663, 1019
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	2 cut(s)	174, 729
SmoI	CTYRAG	2 cut(s)	174, 729
Sse9I	AATT	8 cut(s)	285, 292, 475, 503, 513, 574, 602, 1105
SsiI	CCGC	1 cut(s)	1059
SspMI	CTAG	3 cut(s)	96, 738, 810
StyI	CCWWGG	2 cut(s)	566, 1014
TaaI	ACNGT	1 cut(s)	628
TaqI	TCGA	1 cut(s)	1021
TasI	AATT	8 cut(s)	285, 292, 475, 503, 513, 574, 602, 1105
TfiI	GAWTC	4 cut(s)	225, 451, 775, 979
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	3 cut(s)	631, 759, 874
TseI	GCWGC	4 cut(s)	170, 482, 713, 965
TspDTI	ATGAA	2 cut(s)	217, 362
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	3 cut(s)	631, 759, 874
Van91I	CCANNNNNTGG	1 cut(s)	800
VneI	GTGCAC	1 cut(s)	111
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	4 cut(s)	285, 475, 513, 1105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	851
XmnI	GAANNNNTTC	2 cut(s)	296, 691
XspI	CTAG	3 cut(s)	96, 738, 810
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.