Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Reverse (-)

17831916 .. 17835945

Gene Structure 4030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G235300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGAGGGATTTTTTGGGTTTGAGTTCAAAGAATGGCAACCTGACTGTGAAAGAGGAGGCCAATGAAGAAGCCAAGAATTCAGCGCTACCAAGAAGTTCAGGGATGCAGTGGTCATTTTCAAACAAGGTTTCTGCACTTCCACAATTCCTGTCTTTCAAGGCTCCCCAAGAAGGTGGGTCAAGAAAAACTGTTCATGATACATCTGCATTTATGACTATATCAACTGCTGATGCTTTTCACTTCAGCCAGAAGCCATTCTCTGGTGTTATCCAGAAAAATTTCACTCTTGATAAGCAAGCTGGAAACCATTATGCAATGACAGTCTCTCCTGTGCAGCAGTTTGATGCACATTCAGTGCATCACTCTCAAGACCAAAGGATTCCGATTGGTTTTAGTTCTACCACAAAACTGCAACCACTTGGAGGAGTTCCAGTTGTGGCCCCTGTATCTCTTCTTCCTTCTAAAAGTTCCCTAGTTGGTACCGCTGATCTCAGGAATGGATCCAAATCTTCTGGGGCGCCTGCTCAATTAACCATCTTTTATGCTGGTTCTGTGAATGTTTATGATGATATATCTCCTGAGAAGGCCCAGGCTATTATGTTGCTGGCTGGAAATGGACCTTCTCCAACTCACTGTAAGGCACCTACCATAGCTCAAGTGCCGGCACCCATCCCTAGACCTTCCCCAGGCGATGGTGTTTTCAGGAACCAGGCCCATATTACATCTACAATCTCTGGGCTTCCAAGCCATCTTTCCGTGACTTCACATGCTAGTTCTCACTCTGGAGGAGCATTTAGCAGCACCAATGAATTAGCTATAGTGAAACCTGTAGGAACTTCAGCATCTCCTATTGACCACTCAGAGGCTTCTAAAGTAGTCAGTTCAGTGGGATCTGCCATGACAAACCTGATTCCAGCAGTACCAGTGCCTCAAGCACGCAAAGCATCCTTGGCTAGATTCTTTGAGAAGCGCAAGGAGAGGATGATGACCACATTGCCATACAATGTCAGCAAAAAATCTCCAGAGTGTAGCACACCTGGATCTGATGGTCTGAGTTTCTCTTTCAACTCTTCTGGTTCTTGCCCTCCTCAAGCTATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

369

Amino Acids

38.73

Weight (kDa)

9.38

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	4 cut(s)	482, 520, 643, 667
AccB7I	CCANNNNNTGG	2 cut(s)	263, 695
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	4 cut(s)	498, 511, 901, 1051
AcsI	RAATTY	2 cut(s)	79, 280
AcuI	CTGAAG	2 cut(s)	229, 825
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	2 cut(s)	484, 924
AfeI	AGCGCT	1 cut(s)	87
AfiI	CCNNNNNNNGG	6 cut(s)	173, 263, 425, 689, 695, 865
AgsI	TTSAA	4 cut(s)	30, 123, 160, 1069
AjnI	CCWGG	4 cut(s)	591, 688, 711, 1039
AjuI	GAANNNNNNNTTGG	2 cut(s)	739, 771
AluBI	AGCT	4 cut(s)	302, 656, 818, 1097
AluI	AGCT	4 cut(s)	302, 656, 818, 1097
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	4 cut(s)	498, 511, 901, 1051
Aor51HI	AGCGCT	1 cut(s)	87
AoxI	GGCC	4 cut(s)	60, 441, 588, 714
ApeKI	GCWGC	2 cut(s)	337, 801
ApoI	RAATTY	2 cut(s)	79, 280
Asp700I	GAANNNNTTC	2 cut(s)	257, 281
Asp718I	GGTACC	1 cut(s)	482
AspLEI	GCGC	3 cut(s)	88, 523, 975
AspS9I	GGNCC	4 cut(s)	442, 589, 620, 715
AvaII	GGWCC	1 cut(s)	620
BamHI	GGATCC	1 cut(s)	503
BanI	GGYRCC	4 cut(s)	482, 520, 643, 667
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
BbvI	GCAGC	2 cut(s)	349, 813
BccI	CCATC	5 cut(s)	545, 680, 689, 759, 1043
BciT130I	CCWGG	4 cut(s)	593, 690, 713, 1041
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	4 cut(s)	476, 678, 774, 957
BfmI	CTRYAG	2 cut(s)	819, 831
BfoI	RGCGCY	2 cut(s)	89, 524
BisI	GCNGC	2 cut(s)	338, 802
BlsI	GCNGC	2 cut(s)	339, 803
Bme1390I	CCNGG	4 cut(s)	593, 690, 713, 1041
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	4 cut(s)	442, 589, 620, 715
BmiI	GGNNCC	8 cut(s)	165, 444, 484, 505, 522, 645, 669, 710
BmrFI	CCNGG	4 cut(s)	593, 690, 713, 1041
BmsI	GCATC	6 cut(s)	96, 223, 337, 370, 854, 956
BpmI	CTGGAG	2 cut(s)	807, 1008
BpuEI	CTTGAG	4 cut(s)	354, 642, 918, 1077
BsaBI	GATNNNNATC	1 cut(s)	508
BsaHI	GRCGYC	1 cut(s)	521
BsaJI	CCNNGG	3 cut(s)	591, 688, 951
BsaXI	ACNNNNNCTCC	4 cut(s)	313, 343, 420, 450
Bsc4I	CCNNNNNNNGG	6 cut(s)	173, 263, 425, 689, 695, 865
Bse118I	RCCGGY	1 cut(s)	664
Bse1I	ACTGG	2 cut(s)	434, 926
Bse3DI	GCAATG	2 cut(s)	324, 995
Bse8I	GATNNNNATC	1 cut(s)	508
BseBI	CCWGG	4 cut(s)	593, 690, 713, 1041
BseDI	CCNNGG	3 cut(s)	591, 688, 951
BseGI	GGATG	4 cut(s)	111, 672, 947, 990
BseJI	GATNNNNATC	1 cut(s)	508
BseLI	CCNNNNNNNGG	6 cut(s)	173, 263, 425, 689, 695, 865
BseMI	GCAATG	2 cut(s)	324, 995
BseMII	CTCAG	4 cut(s)	508, 573, 876, 1046
BseNI	ACTGG	2 cut(s)	434, 926
BseRI	GAGGAG	4 cut(s)	71, 441, 804, 1080
BseXI	GCAGC	2 cut(s)	349, 813
BsgI	GTGCAG	2 cut(s)	120, 356
BshFI	GGCC	4 cut(s)	62, 443, 590, 716
BshNI	GGYRCC	4 cut(s)	482, 520, 643, 667
BsiSI	CCGG	1 cut(s)	665
BslI	CCNNNNNNNGG	6 cut(s)	173, 263, 425, 689, 695, 865
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	4 cut(s)	62, 443, 590, 716
Bsp143I	GATC	4 cut(s)	490, 503, 893, 1043
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	4 cut(s)	62, 443, 590, 716
BspCNI	CTCAG	4 cut(s)	507, 574, 875, 1047
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	8 cut(s)	165, 444, 484, 505, 522, 645, 669, 710
BspPI	GGATC	4 cut(s)	498, 511, 901, 1051
BspT107I	GGYRCC	4 cut(s)	482, 520, 643, 667
BsrDI	GCAATG	2 cut(s)	324, 995
BsrFI	RCCGGY	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	434, 926
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	3 cut(s)	591, 688, 951
BssMI	GATC	4 cut(s)	490, 503, 893, 1043
BssNI	GRCGYC	1 cut(s)	521
BssT1I	CCWWGG	1 cut(s)	951
Bst2UI	CCWGG	4 cut(s)	593, 690, 713, 1041
Bst4CI	ACNGT	4 cut(s)	49, 193, 325, 638
Bst6I	CTCTTC	2 cut(s)	459, 1078
BstACI	GRCGYC	1 cut(s)	521
BstC8I	GCNNGC	5 cut(s)	300, 525, 609, 666, 940
BstDEI	CTNAG	4 cut(s)	494, 582, 862, 1055
BstENI	CCTNNNNNAGG	1 cut(s)	687
BstF5I	GGATG	4 cut(s)	111, 672, 947, 990
BstH2I	RGCGCY	2 cut(s)	89, 524
BstHHI	GCGC	3 cut(s)	88, 523, 975
BstKTI	GATC	4 cut(s)	493, 506, 896, 1046
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	4 cut(s)	490, 503, 893, 1043
BstMWI	GCNNNNNNNGC	2 cut(s)	944, 953
BstNI	CCWGG	4 cut(s)	593, 690, 713, 1041
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	4 cut(s)	591, 688, 711, 1039
BstSFI	CTRYAG	2 cut(s)	819, 831
BstV1I	GCAGC	2 cut(s)	349, 813
BstX2I	RGATCY	3 cut(s)	503, 893, 1043
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	3 cut(s)	503, 893, 1043
BsuRI	GGCC	4 cut(s)	62, 443, 590, 716
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	4 cut(s)	111, 672, 947, 990
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	5 cut(s)	116, 363, 634, 894, 933
Cac8I	GCNNGC	5 cut(s)	300, 525, 609, 666, 940
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	3 cut(s)	88, 523, 975
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	4 cut(s)	442, 589, 620, 715
Csp6I	GTAC	2 cut(s)	483, 923
CviAII	CATG	3 cut(s)	197, 770, 901
CviQI	GTAC	2 cut(s)	483, 923
DdeI	CTNAG	4 cut(s)	494, 582, 862, 1055
DinI	GGCGCC	1 cut(s)	522
DpnI	GATC	4 cut(s)	492, 505, 895, 1045
DpnII	GATC	4 cut(s)	490, 503, 893, 1043
Eam1104I	CTCTTC	2 cut(s)	459, 1078
EarI	CTCTTC	2 cut(s)	459, 1078
Eco130I	CCWWGG	1 cut(s)	951
Eco47I	GGWCC	1 cut(s)	620
Eco47III	AGCGCT	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	229, 825
EcoNI	CCTNNNNNAGG	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	4 cut(s)	591, 688, 711, 1039
EcoT14I	CCWWGG	1 cut(s)	951
EgeI	GGCGCC	1 cut(s)	522
EheI	GGCGCC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	951
FaeI	CATG	3 cut(s)	200, 773, 904
FatI	CATG	3 cut(s)	196, 769, 900
Fnu4HI	GCNGC	2 cut(s)	338, 802
FokI	GGATG	4 cut(s)	118, 659, 934, 997
Fsp4HI	GCNGC	2 cut(s)	338, 802
FspBI	CTAG	4 cut(s)	476, 678, 774, 957
GlaI	GCGC	3 cut(s)	87, 522, 974
GluI	GCNGC	2 cut(s)	338, 802
GsuI	CTGGAG	2 cut(s)	807, 1008
HaeII	RGCGCY	2 cut(s)	89, 524
HaeIII	GGCC	4 cut(s)	62, 443, 590, 716
HapII	CCGG	1 cut(s)	665
HhaI	GCGC	3 cut(s)	88, 523, 975
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	200, 773, 904
Hin6I	GCGC	3 cut(s)	86, 521, 973
HinP1I	GCGC	3 cut(s)	86, 521, 973
HinfI	GANTC	3 cut(s)	382, 913, 960
HpaII	CCGG	1 cut(s)	665
Hpy188I	TCNGA	4 cut(s)	387, 865, 1048, 1056
HpyAV	CCTTC	5 cut(s)	167, 471, 580, 633, 693
HpyCH4III	ACNGT	4 cut(s)	49, 193, 325, 638
HpyCH4V	TGCA	8 cut(s)	109, 137, 209, 317, 337, 350, 361, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	944, 953
HpyF3I	CTNAG	4 cut(s)	494, 582, 862, 1055
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	3 cut(s)	200, 773, 904
HspAI	GCGC	3 cut(s)	86, 521, 973
KasI	GGCGCC	1 cut(s)	520
KpnI	GGTACC	1 cut(s)	486
KroI	GCCGGC	1 cut(s)	664
KroNI	GCCGGC	1 cut(s)	666
Kzo9I	GATC	4 cut(s)	490, 503, 893, 1043
LmnI	GCTCC	2 cut(s)	169, 791
Lsp1109I	GCAGC	2 cut(s)	349, 813
LweI	GCATC	6 cut(s)	96, 223, 337, 370, 854, 956
MaeI	CTAG	4 cut(s)	476, 678, 774, 957
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	4 cut(s)	492, 505, 895, 1045
MboI	GATC	4 cut(s)	490, 503, 893, 1043
MboII	GAAGA	5 cut(s)	80, 446, 449, 504, 1065
MflI	RGATCY	3 cut(s)	503, 893, 1043
MluCI	AATT	6 cut(s)	79, 146, 280, 530, 812, 1102
Mly113I	GGCGCC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	653
MnlI	CCTC	9 cut(s)	49, 52, 419, 782, 859, 942, 975, 1098, 1101
MroNI	GCCGGC	1 cut(s)	664
MroXI	GAANNNNTTC	2 cut(s)	257, 281
MseI	TTAA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	4 cut(s)	593, 690, 713, 1041
MvaI	CCWGG	4 cut(s)	593, 690, 713, 1041
MwoI	GCNNNNNNNGC	2 cut(s)	944, 953
NaeI	GCCGGC	1 cut(s)	666
NarI	GGCGCC	1 cut(s)	521
NdeII	GATC	4 cut(s)	490, 503, 893, 1043
NgoMIV	GCCGGC	1 cut(s)	664
NlaIII	CATG	3 cut(s)	200, 773, 904
NlaIV	GGNNCC	8 cut(s)	165, 444, 484, 505, 522, 645, 669, 710
NmuCI	GTSAC	1 cut(s)	760
NspI	RCATGY	1 cut(s)	773
PagI	TCATGA	1 cut(s)	196
PdiI	GCCGGC	1 cut(s)	666
PdmI	GAANNNNTTC	2 cut(s)	257, 281
PfeI	GAWTC	3 cut(s)	382, 913, 960
PflMI	CCANNNNNTGG	2 cut(s)	263, 695
PkrI	GCNGC	2 cut(s)	339, 803
PluTI	GGCGCC	1 cut(s)	524
Psp6I	CCWGG	4 cut(s)	591, 688, 711, 1039
PspGI	CCWGG	4 cut(s)	591, 688, 711, 1039
PspN4I	GGNNCC	8 cut(s)	165, 444, 484, 505, 522, 645, 669, 710
PspPI	GGNCC	4 cut(s)	442, 589, 620, 715
PsuI	RGATCY	3 cut(s)	503, 893, 1043
RsaI	GTAC	2 cut(s)	484, 924
RsaNI	GTAC	2 cut(s)	483, 923
SaqAI	TTAA	1 cut(s)	533
SatI	GCNGC	2 cut(s)	338, 802
Sau3AI	GATC	4 cut(s)	490, 503, 893, 1043
Sau96I	GGNCC	4 cut(s)	442, 589, 620, 715
ScrFI	CCNGG	4 cut(s)	593, 690, 713, 1041
SfaNI	GCATC	6 cut(s)	96, 223, 337, 370, 854, 956
SfcI	CTRYAG	2 cut(s)	819, 831
SfoI	GGCGCC	1 cut(s)	522
SinI	GGWCC	1 cut(s)	620
SmlI	CTYRAG	4 cut(s)	369, 657, 933, 1092
SmoI	CTYRAG	4 cut(s)	369, 657, 933, 1092
Sse9I	AATT	6 cut(s)	79, 146, 280, 530, 812, 1102
SsiI	CCGC	1 cut(s)	486
SspDI	GGCGCC	1 cut(s)	520
SspMI	CTAG	4 cut(s)	476, 678, 774, 957
StyD4I	CCNGG	4 cut(s)	591, 688, 711, 1039
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	4 cut(s)	49, 193, 325, 638
TasI	AATT	6 cut(s)	79, 146, 280, 530, 812, 1102
TfiI	GAWTC	3 cut(s)	382, 913, 960
Tru1I	TTAA	1 cut(s)	533
Tru9I	TTAA	1 cut(s)	533
TscAI	CASTG	5 cut(s)	116, 363, 641, 894, 933
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	2 cut(s)	337, 801
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	3 cut(s)	81, 185, 825
TspGWI	ACGGA	1 cut(s)	748
TspRI	CASTG	5 cut(s)	116, 363, 641, 894, 933
Van91I	CCANNNNNTGG	2 cut(s)	263, 695
VpaK11BI	GGWCC	1 cut(s)	620
XagI	CCTNNNNNAGG	1 cut(s)	687
XapI	RAATTY	2 cut(s)	79, 280
XceI	RCATGY	1 cut(s)	773
XmnI	GAANNNNTTC	2 cut(s)	257, 281
XspI	CTAG	4 cut(s)	476, 678, 774, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.