Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Forward (+)

6119707 .. 6123044

Gene Structure 3338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAGAGAGATTTTCTCGGGTTGGGTTCGAAAAATTCTCCGATCACTGTCAAGGAGGAAACCAGCGAAAGCTCTAGAGATTCAGCTCCCAACAGAGGAATGAACTGGTCTTTCTCAAACAAAGTATCAGCTTCTTCTTCTCAGTTTCTATCCTTCAGGCCAACTCAAGAAGATAGACATAGAAAGTCTGGAAATTATCATCTTCCTCACTCTGGTTCCTTCATGCCATCATCAGTAGCTGATGTTTATGATTCAACCCGCAAAGCTCCTTACAGTTCTGTACAGGGAGTGAGGATGTTCCCTAATTCCAATCAACACGAAGAAACTAACGCAGTTTCCATGTCGATGCCGGGTTTCCAGTCTCATCATTATGCACCAGGAGGAAGAAGCTTCATGAACAATAACAATAACTCACAACCTTTGGTAGGAGTTCCTATCATGGCACCTCCAATTTCAATCCTTCCTCCTCCAGGTTCCATTGTAGGGACTACTGATATTAGATCTTCTTCCAAGCCAATAGGTTCACCTGCGCAGTTGACGATCTTTTATGCCGGTTCAGTTTGTGTTTACGATGACATATCTCCTGAAAAGGCAAAGGCGATAATGTTGCTAGCTGGGAACGGTTCCTCTATGCCTCAAGTCTTTTCGCCGCCTCAAACTCATCAACAAGTGGTCCATCATACTCGTGCCTCTGTCGATTCTTCAGCTATGCCTCCTAGCTTCATGCCTACAATATCTTATCTTAGCCCTGAAGCTGGAAGTAGCACAAACGGACTCGGAGCCACAAAAGCGACAAGAGGCTTGACGTCAACATATCACAACAACCAAGCTAATGGATCCAATATTAACTGCCCAGTACCAGTTTCTTGTTCTACCAATGTAATGGCTCCAACAGTGGCATTACCTCTGGCTCGCAAAGCATCCCTGGCTAGGTTTTTAGAGAAACGCAAAGAAAGGGTCACGAGCGTATCCCCATATTGCTTAGACAAGAAGTCATCGACAGATTGTCGCAGATCAATGTCTGAATGCATTAGTTCTTCTCTCAGCTCTGCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

352

Amino Acids

37.75

Weight (kDa)

9.31

Isoelectric Point (pI)

68.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	162 - 193	3.8e-18	tify domain
Jas_motif	PF09425	289 - 313	2.3e-13	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
AatII	GACGTC	1 cut(s)	809
Acc16I	TGCGCA	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	442
AciI	CCGC	2 cut(s)	259, 650
AclWI	GGATC	2 cut(s)	831, 844
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	3 cut(s)	139, 687, 771
AcyI	GRCGYC	1 cut(s)	806
AfaI	GTAC	2 cut(s)	282, 858
AfiI	CCNNNNNNNGG	7 cut(s)	95, 212, 425, 470, 483, 755, 930
AgsI	TTSAA	2 cut(s)	255, 456
AhdI	GACNNNNNGTC	2 cut(s)	991, 1005
AjnI	CCWGG	3 cut(s)	376, 469, 924
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	2 cut(s)	831, 844
AlwNI	CAGNNNCTG	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	942, 974
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	673
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	516
AsuII	TTCGAA	1 cut(s)	29
AsuNHI	GCTAGC	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	673
BaeI	ACNNNNGTAYC	2 cut(s)	951, 984
BamHI	GGATCC	1 cut(s)	836
BanI	GGYRCC	1 cut(s)	442
BauI	CACGAG	2 cut(s)	684, 961
BccI	CCATC	2 cut(s)	235, 684
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	3 cut(s)	378, 471, 926
BciVI	GTATCC	1 cut(s)	979
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	4 cut(s)	75, 611, 717, 930
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	979
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	1 cut(s)	650
BlsI	GCNGC	1 cut(s)	651
Bme1390I	CCNGG	4 cut(s)	351, 378, 471, 926
Bme18I	GGWCC	1 cut(s)	673
BmeRI	GACNNNNNGTC	2 cut(s)	991, 1005
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	673
BmiI	GGNNCC	7 cut(s)	217, 444, 475, 625, 781, 838, 888
BmrFI	CCNGG	4 cut(s)	351, 378, 471, 926
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	2 cut(s)	336, 929
BmtI	GCTAGC	1 cut(s)	614
BmuI	ACTGGG	1 cut(s)	848
BplI	GAGNNNNNCTC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	150, 621
BpuMI	CCSGG	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	806
BsaJI	CCNNGG	1 cut(s)	924
Bsc4I	CCNNNNNNNGG	7 cut(s)	95, 212, 425, 470, 483, 755, 930
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	4 cut(s)	110, 358, 854, 860
BseBI	CCWGG	3 cut(s)	378, 471, 926
BseDI	CCNNGG	1 cut(s)	924
BseGI	GGATG	2 cut(s)	300, 920
BseLI	CCNNNNNNNGG	7 cut(s)	95, 212, 425, 470, 483, 755, 930
BseMII	CTCAG	2 cut(s)	155, 1057
BseNI	ACTGG	4 cut(s)	110, 358, 854, 860
BseRI	GAGGAG	1 cut(s)	456
BseYI	CCCAGC	1 cut(s)	614
BshFI	GGCC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	350, 552
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	7 cut(s)	95, 212, 425, 470, 483, 755, 930
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	1031
BsnI	GGCC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	42, 500, 540, 836, 1013
BspACI	CCGC	2 cut(s)	259, 650
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	2 cut(s)	154, 1056
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	7 cut(s)	217, 444, 475, 625, 781, 838, 888
BspMI	ACCTGC	1 cut(s)	535
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	2 cut(s)	831, 844
BspT104I	TTCGAA	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	551
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	4 cut(s)	110, 358, 854, 860
BssAI	RCCGGY	1 cut(s)	551
BssECI	CCNNGG	1 cut(s)	924
BssMI	GATC	5 cut(s)	42, 500, 540, 836, 1013
BssNI	GRCGYC	1 cut(s)	806
BssSI	CACGAG	2 cut(s)	684, 961
Bst2BI	CACGAG	2 cut(s)	684, 961
Bst2UI	CCWGG	3 cut(s)	378, 471, 926
Bst4CI	ACNGT	4 cut(s)	49, 275, 623, 895
BstACI	GRCGYC	1 cut(s)	806
BstAUI	TGTACA	1 cut(s)	280
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	612, 913
BstDEI	CTNAG	4 cut(s)	141, 743, 982, 1043
BstENI	CCTNNNNNAGG	2 cut(s)	423, 468
BstF5I	GGATG	2 cut(s)	300, 920
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	5 cut(s)	45, 503, 543, 839, 1016
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	5 cut(s)	42, 500, 540, 836, 1013
BstMWI	GCNNNNNNNGC	3 cut(s)	788, 917, 926
BstNI	CCWGG	3 cut(s)	378, 471, 926
BstSCI	CCNGG	4 cut(s)	349, 376, 469, 924
BstX2I	RGATCY	2 cut(s)	500, 836
BstXI	CCANNNNNNTGG	2 cut(s)	833, 883
BstYI	RGATCY	2 cut(s)	500, 836
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	300, 920
BtsIMutI	CAGTG	2 cut(s)	45, 900
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	612, 913
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	673
Csp6I	GTAC	2 cut(s)	281, 857
CviAII	CATG	5 cut(s)	223, 340, 394, 439, 724
CviQI	GTAC	2 cut(s)	281, 857
DdeI	CTNAG	4 cut(s)	141, 743, 982, 1043
DpnI	GATC	5 cut(s)	44, 502, 542, 838, 1015
DpnII	GATC	5 cut(s)	42, 500, 540, 836, 1013
DriI	GACNNNNNGTC	2 cut(s)	991, 1005
Eam1105I	GACNNNNNGTC	2 cut(s)	991, 1005
Eco47I	GGWCC	1 cut(s)	673
Eco57I	CTGAAG	3 cut(s)	139, 687, 771
Eco88I	CYCGRG	1 cut(s)	17
EcoNI	CCTNNNNNAGG	2 cut(s)	423, 468
EcoRII	CCWGG	3 cut(s)	376, 469, 924
EcoT22I	ATGCAT	1 cut(s)	1031
FaeI	CATG	5 cut(s)	226, 343, 397, 442, 727
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	5 cut(s)	222, 339, 393, 438, 723
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	650
FokI	GGATG	2 cut(s)	307, 907
Fsp4HI	GCNGC	1 cut(s)	650
FspBI	CTAG	4 cut(s)	75, 611, 717, 930
FspI	TGCGCA	1 cut(s)	531
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	1 cut(s)	650
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	2 cut(s)	350, 552
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	1 cut(s)	806
Hin1II	CATG	5 cut(s)	226, 343, 397, 442, 727
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	2 cut(s)	537, 810
HindII	GTYRAC	2 cut(s)	537, 810
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	4 cut(s)	80, 251, 698, 774
HpaII	CCGG	2 cut(s)	350, 552
HphI	GGTGA	1 cut(s)	516
Hpy166II	GTNNAC	4 cut(s)	524, 537, 568, 810
Hpy188I	TCNGA	3 cut(s)	42, 779, 1024
Hpy188III	TCNNGA	6 cut(s)	75, 167, 189, 394, 584, 961
Hpy8I	GTNNAC	4 cut(s)	524, 537, 568, 810
HpyAV	CCTTC	3 cut(s)	163, 229, 470
HpyCH4III	ACNGT	4 cut(s)	49, 275, 623, 895
HpyCH4IV	ACGT	1 cut(s)	806
HpyCH4V	TGCA	3 cut(s)	374, 1029, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	788, 917, 926
HpyF3I	CTNAG	4 cut(s)	141, 743, 982, 1043
HpySE526I	ACGT	1 cut(s)	806
Hsp92I	GRCGYC	1 cut(s)	806
Hsp92II	CATG	5 cut(s)	226, 343, 397, 442, 727
HspAI	GCGC	1 cut(s)	530
Kzo9I	GATC	5 cut(s)	42, 500, 540, 836, 1013
LmnI	GCTCC	4 cut(s)	91, 271, 779, 892
LweI	GCATC	2 cut(s)	336, 929
MaeI	CTAG	4 cut(s)	75, 611, 717, 930
MaeII	ACGT	1 cut(s)	806
MaeIII	GTNAC	1 cut(s)	958
MalI	GATC	5 cut(s)	44, 502, 542, 838, 1015
MboI	GATC	5 cut(s)	42, 500, 540, 836, 1013
MflI	RGATCY	2 cut(s)	500, 836
MluCI	AATT	4 cut(s)	34, 193, 304, 450
MlyI	GAGTC	1 cut(s)	768
MmeI	TCCRAC	1 cut(s)	914
Mph1103I	ATGCAT	1 cut(s)	1031
MseI	TTAA	1 cut(s)	846
MslI	CAYNNNNRTG	3 cut(s)	344, 369, 684
MspI	CCGG	2 cut(s)	350, 552
MspR9I	CCNGG	4 cut(s)	351, 378, 471, 926
Mva1269I	GAATGC	1 cut(s)	1031
MvaI	CCWGG	3 cut(s)	378, 471, 926
MwoI	GCNNNNNNNGC	3 cut(s)	788, 917, 926
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	5 cut(s)	42, 500, 540, 836, 1013
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	5 cut(s)	226, 343, 397, 442, 727
NlaIV	GGNNCC	7 cut(s)	217, 444, 475, 625, 781, 838, 888
NmuCI	GTSAC	1 cut(s)	958
NsbI	TGCGCA	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	1031
NspV	TTCGAA	1 cut(s)	29
PagI	TCATGA	1 cut(s)	393
PaqCI	CACCTGC	1 cut(s)	535
PctI	GAATGC	1 cut(s)	1031
PfeI	GAWTC	3 cut(s)	80, 251, 698
PkrI	GCNGC	1 cut(s)	651
PleI	GAGTC	1 cut(s)	768
PpsI	GAGTC	1 cut(s)	768
Psp6I	CCWGG	3 cut(s)	376, 469, 924
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	3 cut(s)	376, 469, 924
PspN4I	GGNNCC	7 cut(s)	217, 444, 475, 625, 781, 838, 888
PspPI	GGNCC	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	2 cut(s)	500, 836
RsaI	GTAC	2 cut(s)	282, 858
RsaNI	GTAC	2 cut(s)	281, 857
RseI	CAYNNNNRTG	3 cut(s)	344, 369, 684
SaqAI	TTAA	1 cut(s)	846
SatI	GCNGC	1 cut(s)	650
Sau3AI	GATC	5 cut(s)	42, 500, 540, 836, 1013
Sau96I	GGNCC	1 cut(s)	673
SchI	GAGTC	1 cut(s)	768
ScrFI	CCNGG	4 cut(s)	351, 378, 471, 926
SfaNI	GCATC	2 cut(s)	336, 929
SfuI	TTCGAA	1 cut(s)	29
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	3 cut(s)	344, 369, 684
SmlI	CTYRAG	2 cut(s)	165, 636
SmoI	CTYRAG	2 cut(s)	165, 636
Sse9I	AATT	4 cut(s)	34, 193, 304, 450
SsiI	CCGC	2 cut(s)	259, 650
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	4 cut(s)	75, 611, 717, 930
StyD4I	CCNGG	4 cut(s)	349, 376, 469, 924
TaaI	ACNGT	4 cut(s)	49, 275, 623, 895
TaiI	ACGT	1 cut(s)	809
TaqI	TCGA	4 cut(s)	29, 344, 696, 998
TasI	AATT	4 cut(s)	34, 193, 304, 450
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	3 cut(s)	80, 251, 698
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	2 cut(s)	52, 900
TseFI	GTSAC	1 cut(s)	958
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	5 cut(s)	116, 211, 382, 410, 712
TspGWI	ACGGA	1 cut(s)	786
TspRI	CASTG	2 cut(s)	52, 900
VpaK11BI	GGWCC	1 cut(s)	673
XagI	CCTNNNNNAGG	2 cut(s)	423, 468
XapI	RAATTY	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	74
XspI	CTAG	4 cut(s)	75, 611, 717, 930
ZraI	GACGTC	1 cut(s)	807
Zsp2I	ATGCAT	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.