Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000122.1

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Forward (+)

44937 .. 47256

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000122.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgtggctcgccttcttgcaattggtagggttgaccagaggtgctggttcgaattggcccttctcaaacaaggtccctgcaattcctcatcatttgatgtctttcaaaggtgctcaagaaggtaagactcaaaagatggtacctgagtccttcttgtcttccggatttatgcccgtctcaacttcacacgcatttgatccttgtcagaaacgaccttcatgtgatgcacagaagtacttcaatcacgataggcaaggtggcactcactttaccctgacagcttatcctatgcaacatgatgtgcactctgtacaccgtccttatgacatgaagatgatttcagtttccaatcaaggtatttctgttcctatgggcaatccatactcgaagaatcattttgcatctatgggtcagaattttgctgttactaccaccaagcaacaattatttggaggagttcctgttactactccatattcagttcctccaagttcagggtccattgttggaaccactgaaccatggaacaacgtcaaggcatctgggtctccttctcagatgacaatcttctatgctggtagtgtgaatgtctatcatgatatctcccctgagaaggctcaggctatgatgattttagctcagaatggttcttccatcccttctaatggttcacactcaaaagctgaagcaccaagagcaaagttggccgcggaagatggtgttccagtgaatcagactataaatacaccaccttctgcttttcctagtcccttatctgtttcttcacatactggtacccaatcagtaagtgggtccacaagcactgatgaactgatggcagctaaaaccacagggcttccaacgactcctgttagtaaagtggagcctccaaaaacagcaaatgcagttaaatctgttgctgcaacatctatgattaattctgctattccacaagctcgcaaagcatccttggctcgatttttagggaaacgcaaggaaagggtaataaattcagcaccatacaacttgagcaagaaatctgcagaaggcagcaacccagaatctaatggaatgaattcctgtgcaagcaaaggagagcaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

368

Amino Acids

39.14

Weight (kDa)

9.58

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	139, 794
AccB1I	GGYRCC	2 cut(s)	139, 794
AccII	CGCG	1 cut(s)	710
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	2 cut(s)	708, 710
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	3 cut(s)	415, 1009, 1075
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	4 cut(s)	141, 236, 312, 796
AfiI	CCNNNNNNNGG	3 cut(s)	494, 613, 665
AgsI	TTSAA	2 cut(s)	106, 241
AluBI	AGCT	5 cut(s)	281, 638, 683, 842, 956
AluI	AGCT	5 cut(s)	281, 638, 683, 842, 956
Alw21I	GWGCWC	2 cut(s)	115, 306
Alw26I	GTCTC	2 cut(s)	181, 552
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	2 cut(s)	56, 705
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	839, 920, 1050
ApoI	RAATTY	3 cut(s)	415, 1009, 1075
AseI	ATTAAT	1 cut(s)	936
Asp700I	GAANNNNTTC	2 cut(s)	236, 1075
Asp718I	GGTACC	2 cut(s)	139, 794
AspS9I	GGNCC	4 cut(s)	57, 73, 498, 813
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	3 cut(s)	73, 498, 813
BaeGI	GKGCMC	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	131, 164
BanI	GGYRCC	2 cut(s)	139, 794
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	115, 306
BbvI	GCAGC	3 cut(s)	851, 907, 1062
BccI	CCATC	4 cut(s)	130, 662, 710, 829
BcoDI	GTCTC	2 cut(s)	181, 552
BfaI	CTAG	1 cut(s)	765
BfmI	CTRYAG	1 cut(s)	1041
BisI	GCNGC	4 cut(s)	708, 840, 921, 1051
BlsI	GCNGC	4 cut(s)	709, 841, 922, 1052
BmcAI	AGTACT	1 cut(s)	236
Bme18I	GGWCC	3 cut(s)	73, 498, 813
BmgT120I	GGNCC	4 cut(s)	57, 73, 498, 813
BmiI	GGNNCC	7 cut(s)	75, 141, 499, 511, 796, 814, 885
BmsI	GCATC	4 cut(s)	214, 410, 548, 974
BpiI	GAAGAC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	99, 1048
BsaBI	GATNNNNATC	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	3 cut(s)	521, 708, 969
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	494, 613, 665
Bse1I	ACTGG	2 cut(s)	725, 796
Bse8I	GATNNNNATC	1 cut(s)	563
BseAI	TCCGGA	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	521, 708, 969
BseGI	GGATG	2 cut(s)	654, 965
BseJI	GATNNNNATC	1 cut(s)	563
BseLI	CCNNNNNNNGG	3 cut(s)	494, 613, 665
BseMII	CTCAG	5 cut(s)	135, 569, 600, 632, 653
BseNI	ACTGG	2 cut(s)	725, 796
BseRI	GAGGAG	1 cut(s)	468
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	851, 907, 1062
Bsh1236I	CGCG	1 cut(s)	710
BshFI	GGCC	2 cut(s)	58, 707
BshNI	GGYRCC	2 cut(s)	139, 794
BsiHKAI	GWGCWC	2 cut(s)	115, 306
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	59, 753
BslI	CCNNNNNNNGG	3 cut(s)	494, 613, 665
BsmAI	GTCTC	2 cut(s)	181, 552
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	2 cut(s)	59, 753
BsnI	GGCC	2 cut(s)	58, 707
Bso31I	GGTCTC	1 cut(s)	552
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	115, 306
Bsp13I	TCCGGA	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	2 cut(s)	708, 710
BspANI	GGCC	2 cut(s)	58, 707
BspCNI	CTCAG	5 cut(s)	136, 568, 601, 631, 652
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	710
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	7 cut(s)	75, 141, 499, 511, 796, 814, 885
BspMAI	CTGCAG	1 cut(s)	1045
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	50
BspT107I	GGYRCC	2 cut(s)	139, 794
BspTNI	GGTCTC	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	725, 796
BssECI	CCNNGG	3 cut(s)	521, 708, 969
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	2 cut(s)	521, 969
Bst4CI	ACNGT	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	9, 958, 1087
BstDEI	CTNAG	5 cut(s)	144, 555, 609, 618, 639
BstDSI	CCRYGG	2 cut(s)	521, 708
BstF5I	GGATG	2 cut(s)	654, 965
BstFNI	CGCG	1 cut(s)	710
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	2 cut(s)	181, 552
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	695, 704, 962, 971
BstSFI	CTRYAG	1 cut(s)	1041
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	1 cut(s)	710
BstV1I	GCAGC	3 cut(s)	851, 907, 1062
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	58, 707
BtgI	CCRYGG	2 cut(s)	521, 708
BtsCI	GGATG	2 cut(s)	654, 965
BtsIMutI	CAGTG	3 cut(s)	513, 732, 822
Cac8I	GCNNGC	3 cut(s)	9, 958, 1087
CciI	TCATGA	1 cut(s)	595
Cfr13I	GGNCC	4 cut(s)	57, 73, 498, 813
Cfr42I	CCGCGG	1 cut(s)	711
Csp6I	GTAC	4 cut(s)	140, 235, 311, 795
CviAII	CATG	5 cut(s)	219, 296, 328, 522, 596
CviQI	GTAC	4 cut(s)	140, 235, 311, 795
DdeI	CTNAG	5 cut(s)	144, 555, 609, 618, 639
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	705
Eco130I	CCWWGG	2 cut(s)	521, 969
Eco31I	GGTCTC	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	601
Eco47I	GGWCC	3 cut(s)	73, 498, 813
Eco57I	CTGAAG	1 cut(s)	705
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	1075
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	2 cut(s)	521, 969
ErhI	CCWWGG	2 cut(s)	521, 969
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	5 cut(s)	222, 299, 331, 525, 599
FaqI	GGGAC	2 cut(s)	59, 753
FatI	CATG	5 cut(s)	218, 295, 327, 521, 595
Fnu4HI	GCNGC	4 cut(s)	708, 840, 921, 1051
FokI	GGATG	2 cut(s)	641, 952
Fsp4HI	GCNGC	4 cut(s)	708, 840, 921, 1051
FspBI	CTAG	1 cut(s)	765
GluI	GCNGC	4 cut(s)	708, 840, 921, 1051
HaeIII	GGCC	2 cut(s)	58, 707
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	5 cut(s)	222, 299, 331, 525, 599
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	6 cut(s)	127, 146, 391, 730, 865, 1061
HpaII	CCGG	1 cut(s)	162
Hpy166II	GTNNAC	5 cut(s)	33, 304, 313, 671, 816
Hpy188I	TCNGA	5 cut(s)	207, 414, 558, 642, 735
Hpy188III	TCNNGA	4 cut(s)	116, 162, 245, 596
Hpy8I	GTNNAC	5 cut(s)	33, 304, 313, 671, 816
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	531
HpyF10VI	GCNNNNNNNGC	4 cut(s)	695, 704, 962, 971
HpyF3I	CTNAG	5 cut(s)	144, 555, 609, 618, 639
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	5 cut(s)	222, 299, 331, 525, 599
Kpn2I	TCCGGA	1 cut(s)	161
KpnI	GGTACC	2 cut(s)	143, 798
KspI	CCGCGG	1 cut(s)	711
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	3 cut(s)	851, 907, 1062
LweI	GCATC	4 cut(s)	214, 410, 548, 974
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	2 cut(s)	424, 463
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	7 cut(s)	150, 343, 400, 559, 642, 725, 774
MfeI	CAATTG	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	115, 306
MluCI	AATT	8 cut(s)	20, 52, 81, 415, 443, 937, 1009, 1075
MlyI	GAGTC	3 cut(s)	121, 155, 859
MmeI	TCCRAC	2 cut(s)	487, 884
MnlI	CCTC	5 cut(s)	32, 96, 446, 495, 897
MroI	TCCGGA	1 cut(s)	161
MroXI	GAANNNNTTC	2 cut(s)	236, 1075
MseI	TTAA	2 cut(s)	909, 936
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	4 cut(s)	695, 704, 962, 971
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	5 cut(s)	222, 299, 331, 525, 599
NlaIV	GGNNCC	7 cut(s)	75, 141, 499, 511, 796, 814, 885
NspV	TTCGAA	1 cut(s)	50
PagI	TCATGA	1 cut(s)	595
PdmI	GAANNNNTTC	2 cut(s)	236, 1075
PfeI	GAWTC	3 cut(s)	391, 730, 1061
PkrI	GCNGC	4 cut(s)	709, 841, 922, 1052
PleI	GAGTC	3 cut(s)	121, 154, 859
PpsI	GAGTC	3 cut(s)	121, 154, 859
PpuMI	RGGWCCY	1 cut(s)	73
PshBI	ATTAAT	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	73
PspN4I	GGNNCC	7 cut(s)	75, 141, 499, 511, 796, 814, 885
PspPI	GGNCC	4 cut(s)	57, 73, 498, 813
PspPPI	RGGWCCY	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	1045
RsaI	GTAC	4 cut(s)	141, 236, 312, 796
RsaNI	GTAC	4 cut(s)	140, 235, 311, 795
RseI	CAYNNNNRTG	1 cut(s)	332
SacII	CCGCGG	1 cut(s)	711
SaqAI	TTAA	2 cut(s)	909, 936
SatI	GCNGC	4 cut(s)	708, 840, 921, 1051
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	4 cut(s)	57, 73, 498, 813
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	3 cut(s)	121, 155, 859
SduI	GDGCHC	2 cut(s)	115, 306
SfaNI	GCATC	4 cut(s)	214, 410, 548, 974
SfcI	CTRYAG	1 cut(s)	1041
Sfr303I	CCGCGG	1 cut(s)	711
SfuI	TTCGAA	1 cut(s)	50
SgrBI	CCGCGG	1 cut(s)	711
SinI	GGWCC	3 cut(s)	73, 498, 813
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	114, 1027
SmoI	CTYRAG	2 cut(s)	114, 1027
Sse9I	AATT	8 cut(s)	20, 52, 81, 415, 443, 937, 1009, 1075
SsiI	CCGC	2 cut(s)	708, 710
SspMI	CTAG	1 cut(s)	765
StyI	CCWWGG	2 cut(s)	521, 969
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	3 cut(s)	50, 386, 976
TasI	AATT	8 cut(s)	20, 52, 81, 415, 443, 937, 1009, 1075
TatI	WGTACW	2 cut(s)	234, 310
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	3 cut(s)	391, 730, 1061
Tru1I	TTAA	2 cut(s)	909, 936
Tru9I	TTAA	2 cut(s)	909, 936
TscAI	CASTG	3 cut(s)	520, 732, 829
TseI	GCWGC	3 cut(s)	839, 920, 1050
TspDTI	ATGAA	4 cut(s)	207, 344, 843, 1088
TspRI	CASTG	3 cut(s)	520, 732, 829
VneI	GTGCAC	1 cut(s)	302
VpaK11BI	GGWCC	3 cut(s)	73, 498, 813
VspI	ATTAAT	1 cut(s)	936
XapI	RAATTY	3 cut(s)	415, 1009, 1075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	806
XmnI	GAANNNNTTC	2 cut(s)	236, 1075
XspI	CTAG	1 cut(s)	765
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.