Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Reverse (-)

66687072 .. 66691399

Gene Structure 4328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGAGGGATTTCTTGGGTTTGAGTTCAAAGAAGAGCTGTGTGACTGTGAAAGATGAAGCCAATGATGAACCCAAGAATTCAGTAGTAACAAGAAGCTCAAATTCAGGGATGCAGTGGTCATTTTCAAACAAGGTTTCTGCACTTCCTCAGTTCCTATCTTTCACGGCTCCTCAAGAAGAGATGTCGAGAAAAGGTGTTCATGACACATCTTCATTCATGACTATTGCTGATGCTTTTGAATCTAGCCGGAAGTCATCCTCCGGTGTAGTCCAGAAAAGTTTCATTCATGATAAGCAAGCTGGAAACCACTATGCAATGACAGTCTATCCTATGCAGCACCCAGGAGCCAATCAAATAATCCCTATTTCTTTGAGTATTCCTGTTCTCCAAAACAATCTTTTTGGGCAGAAAAACATGGTTGGTTCAACAATAAAACCACAGCCGCTTGCAGGAGTTCCAATTCTAACCCCTGTATCTGCTCTTCCGTCTAAAAGTTCGGTAGTTGGTACCACTGATCTCAGGAATGCATCCAATTCTTCAGGCGTGCCTGCTCAGTTAACAATTTTCTATGCTGGTACTGTGAATGTTTACCATGATATATCTCCTGAGAAGGCCCAGGCAATTATGTTGCTGGCTGGAAATGGATCTTCTCCAGCTCATAGTAAGCTGCCTTCCACAGCTCAAGTGCAAACACCATTCCCTAGTCCTTCCACAGGTGATGGTTTCTTTAGGAACCAGTCTCATATTGCATCATCAATCTCTGGCCTTGCAAGCCCTCTTTCTGTGACGTCACATGCTAGTTCTCGCCCCAGAGGAGCATTTAGTAGCAGCAACGCTTTAACTGTATCAAAACCAGTAGCAACTTCAGTATCTTCAATCAATCACTCAGAGCCTTCAAAAGTGGCAGCACAATCTGTTATGACAAACCTCATTCCAGCAGTACCTGTGCCTCAAGCTCGTAAAGCATCCTTGGCTCGGTTTTTTGAGAAGCGCAAGGAGAGGATGACAAGCACATTGCCATACAATCTCAGCAAAAAATCTCCAGACCGCAGCACACCAGGTTCCGAGGGCGTGACCTTCTCTTTCAACTCTTCTGGTTCCTGTCCTCCCCAAGCCATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

375

Amino Acids

39.72

Weight (kDa)

9.81

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	184 - 214	2.2e-16	tify domain
Jas_motif	PF09425	318 - 342	1.2e-11	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	794
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	2 cut(s)	446, 1051
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	2 cut(s)	79, 103
AcuI	CTGAAG	2 cut(s)	525, 852
AcyI	GRCGYC	1 cut(s)	791
AfaI	GTAC	3 cut(s)	511, 580, 945
AfiI	CCNNNNNNNGG	3 cut(s)	452, 716, 978
AgsI	TTSAA	7 cut(s)	30, 129, 242, 429, 879, 900, 1090
AjnI	CCWGG	3 cut(s)	343, 618, 1060
AluBI	AGCT	7 cut(s)	39, 99, 302, 659, 670, 683, 959
AluI	AGCT	7 cut(s)	39, 99, 302, 659, 670, 683, 959
Alw26I	GTCTC	1 cut(s)	747
AlwI	GGATC	1 cut(s)	655
AlwNI	CAGNNNCTG	1 cut(s)	947
AoxI	GGCC	2 cut(s)	615, 766
ApeKI	GCWGC	5 cut(s)	337, 670, 831, 908, 1053
ApoI	RAATTY	2 cut(s)	79, 103
Asp700I	GAANNNNTTC	1 cut(s)	281
Asp718I	GGTACC	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	996
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	1 cut(s)	731
BaeI	ACNNNNGTAYC	4 cut(s)	459, 492, 855, 888
BanI	GGYRCC	1 cut(s)	509
BarI	GAAGNNNNNNTAC	4 cut(s)	468, 500, 658, 690
BbvI	GCAGC	5 cut(s)	349, 657, 843, 920, 1065
BccI	CCATC	1 cut(s)	716
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	3 cut(s)	345, 620, 1062
BcoDI	GTCTC	1 cut(s)	747
BfaI	CTAG	3 cut(s)	246, 705, 801
BisI	GCNGC	6 cut(s)	338, 446, 671, 832, 909, 1054
BlsI	GCNGC	6 cut(s)	339, 447, 672, 833, 910, 1055
Bme1390I	CCNGG	3 cut(s)	345, 620, 1062
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	6 cut(s)	171, 349, 511, 737, 1066, 1102
BmrFI	CCNGG	3 cut(s)	345, 620, 1062
BmsI	GCATC	5 cut(s)	102, 223, 539, 761, 977
BpmI	CTGGAG	2 cut(s)	639, 1029
BpuEI	CTTGAG	3 cut(s)	159, 669, 939
BsaHI	GRCGYC	1 cut(s)	791
BsaJI	CCNNGG	4 cut(s)	343, 618, 972, 1068
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	3 cut(s)	452, 716, 978
Bse1I	ACTGG	2 cut(s)	739, 857
Bse3DI	GCAATG	2 cut(s)	324, 1016
BseBI	CCWGG	3 cut(s)	345, 620, 1062
BseDI	CCNNGG	4 cut(s)	343, 618, 972, 1068
BseGI	GGATG	5 cut(s)	117, 257, 530, 968, 1011
BseLI	CCNNNNNNNGG	3 cut(s)	452, 716, 978
BseMI	GCAATG	2 cut(s)	324, 1016
BseMII	CTCAG	6 cut(s)	164, 535, 569, 600, 903, 1045
BseNI	ACTGG	2 cut(s)	739, 857
BseRI	GAGGAG	2 cut(s)	162, 831
BseXI	GCAGC	5 cut(s)	349, 657, 843, 920, 1065
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	617, 768
BshNI	GGYRCC	1 cut(s)	509
BsiSI	CCGG	2 cut(s)	250, 264
BslI	CCNNNNNNNGG	3 cut(s)	452, 716, 978
BsmAI	GTCTC	1 cut(s)	747
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	617, 768
Bsp143I	GATC	2 cut(s)	517, 647
BspACI	CCGC	2 cut(s)	446, 1051
BspANI	GGCC	2 cut(s)	617, 768
BspCNI	CTCAG	6 cut(s)	163, 534, 568, 601, 902, 1044
BspHI	TCATGA	3 cut(s)	202, 219, 289
BspLI	GGNNCC	6 cut(s)	171, 349, 511, 737, 1066, 1102
BspPI	GGATC	1 cut(s)	655
BspQI	GCTCTTC	2 cut(s)	29, 489
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	324, 1016
BsrI	ACTGG	2 cut(s)	739, 857
BssECI	CCNNGG	4 cut(s)	343, 618, 972, 1068
BssMI	GATC	2 cut(s)	517, 647
BssNI	GRCGYC	1 cut(s)	791
BssT1I	CCWWGG	1 cut(s)	972
Bst2UI	CCWGG	3 cut(s)	345, 620, 1062
Bst4CI	ACNGT	4 cut(s)	49, 325, 583, 847
Bst6I	CTCTTC	4 cut(s)	29, 174, 489, 1099
BstACI	GRCGYC	1 cut(s)	791
BstC8I	GCNNGC	6 cut(s)	300, 450, 548, 552, 636, 775
BstDEI	CTNAG	6 cut(s)	150, 521, 555, 609, 889, 1031
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	5 cut(s)	117, 257, 530, 968, 1011
BstHHI	GCGC	1 cut(s)	996
BstKTI	GATC	2 cut(s)	520, 650
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	2 cut(s)	517, 647
BstMWI	GCNNNNNNNGC	3 cut(s)	774, 965, 974
BstNI	CCWGG	3 cut(s)	345, 620, 1062
BstNSI	RCATGY	1 cut(s)	800
BstSCI	CCNGG	3 cut(s)	343, 618, 1060
BstV1I	GCAGC	5 cut(s)	349, 657, 843, 920, 1065
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	2 cut(s)	617, 768
BtsCI	GGATG	5 cut(s)	117, 257, 530, 968, 1011
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	122, 513
Cac8I	GCNNGC	6 cut(s)	300, 450, 548, 552, 636, 775
CaiI	CAGNNNCTG	1 cut(s)	947
CciI	TCATGA	3 cut(s)	202, 219, 289
CfoI	GCGC	1 cut(s)	996
Cfr13I	GGNCC	1 cut(s)	616
CsiI	ACCWGGT	1 cut(s)	1060
Csp6I	GTAC	3 cut(s)	510, 579, 944
CviAII	CATG	6 cut(s)	203, 220, 290, 418, 596, 797
CviQI	GTAC	3 cut(s)	510, 579, 944
DdeI	CTNAG	6 cut(s)	150, 521, 555, 609, 889, 1031
DpnI	GATC	2 cut(s)	519, 649
DpnII	GATC	2 cut(s)	517, 647
Eam1104I	CTCTTC	4 cut(s)	29, 174, 489, 1099
EarI	CTCTTC	4 cut(s)	29, 174, 489, 1099
Eco130I	CCWWGG	1 cut(s)	972
Eco57I	CTGAAG	2 cut(s)	525, 852
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	343, 618, 1060
EcoT14I	CCWWGG	1 cut(s)	972
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	972
FaeI	CATG	6 cut(s)	206, 223, 293, 421, 599, 800
FatI	CATG	6 cut(s)	202, 219, 289, 417, 595, 796
Fnu4HI	GCNGC	6 cut(s)	338, 446, 671, 832, 909, 1054
FokI	GGATG	5 cut(s)	124, 244, 517, 955, 1018
Fsp4HI	GCNGC	6 cut(s)	338, 446, 671, 832, 909, 1054
FspBI	CTAG	3 cut(s)	246, 705, 801
GlaI	GCGC	1 cut(s)	995
GluI	GCNGC	6 cut(s)	338, 446, 671, 832, 909, 1054
GsuI	CTGGAG	2 cut(s)	639, 1029
HaeIII	GGCC	2 cut(s)	617, 768
HapII	CCGG	2 cut(s)	250, 264
HhaI	GCGC	1 cut(s)	996
Hin1I	GRCGYC	1 cut(s)	791
Hin1II	CATG	6 cut(s)	206, 223, 293, 421, 599, 800
Hin6I	GCGC	1 cut(s)	994
HinP1I	GCGC	1 cut(s)	994
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	1 cut(s)	242
HpaI	GTTAAC	1 cut(s)	561
HpaII	CCGG	2 cut(s)	250, 264
HphI	GGTGA	1 cut(s)	731
Hpy166II	GTNNAC	2 cut(s)	561, 592
Hpy188I	TCNGA	2 cut(s)	892, 1069
Hpy188III	TCNNGA	9 cut(s)	176, 189, 203, 220, 274, 290, 523, 608, 1046
Hpy8I	GTNNAC	2 cut(s)	561, 592
HpyAV	CCTTC	5 cut(s)	607, 684, 720, 906, 1090
HpyCH4III	ACNGT	4 cut(s)	49, 325, 583, 847
HpyCH4IV	ACGT	1 cut(s)	791
HpyCH4V	TGCA	9 cut(s)	115, 143, 317, 337, 452, 530, 691, 752, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	774, 965, 974
HpyF3I	CTNAG	6 cut(s)	150, 521, 555, 609, 889, 1031
HpySE526I	ACGT	1 cut(s)	791
Hsp92I	GRCGYC	1 cut(s)	791
Hsp92II	CATG	6 cut(s)	206, 223, 293, 421, 599, 800
HspAI	GCGC	1 cut(s)	994
KpnI	GGTACC	1 cut(s)	513
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	2 cut(s)	517, 647
LguI	GCTCTTC	2 cut(s)	29, 489
LmnI	GCTCC	3 cut(s)	175, 347, 818
Lsp1109I	GCAGC	5 cut(s)	349, 657, 843, 920, 1065
LweI	GCATC	5 cut(s)	102, 223, 539, 761, 977
MabI	ACCWGGT	1 cut(s)	1060
MaeI	CTAG	3 cut(s)	246, 705, 801
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	5 cut(s)	43, 88, 787, 792, 1075
MalI	GATC	2 cut(s)	519, 649
MboI	GATC	2 cut(s)	517, 647
MboII	GAAGA	8 cut(s)	46, 191, 204, 476, 531, 642, 867, 1086
MflI	RGATCY	1 cut(s)	647
MluCI	AATT	7 cut(s)	79, 103, 462, 535, 564, 624, 1123
Mph1103I	ATGCAT	1 cut(s)	532
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	2 cut(s)	560, 842
MspI	CCGG	2 cut(s)	250, 264
MspR9I	CCNGG	3 cut(s)	345, 620, 1062
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	3 cut(s)	345, 620, 1062
MwoI	GCNNNNNNNGC	3 cut(s)	774, 965, 974
NdeII	GATC	2 cut(s)	517, 647
NlaIII	CATG	6 cut(s)	206, 223, 293, 421, 599, 800
NlaIV	GGNNCC	6 cut(s)	171, 349, 511, 737, 1066, 1102
NmuCI	GTSAC	4 cut(s)	43, 787, 792, 1075
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	800
PagI	TCATGA	3 cut(s)	202, 219, 289
PciSI	GCTCTTC	2 cut(s)	29, 489
PctI	GAATGC	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	6 cut(s)	339, 447, 672, 833, 910, 1055
Psp6I	CCWGG	3 cut(s)	343, 618, 1060
PspGI	CCWGG	3 cut(s)	343, 618, 1060
PspN4I	GGNNCC	6 cut(s)	171, 349, 511, 737, 1066, 1102
PspPI	GGNCC	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	1 cut(s)	647
RsaI	GTAC	3 cut(s)	511, 580, 945
RsaNI	GTAC	3 cut(s)	510, 579, 944
SapI	GCTCTTC	2 cut(s)	29, 489
SaqAI	TTAA	2 cut(s)	560, 842
SatI	GCNGC	6 cut(s)	338, 446, 671, 832, 909, 1054
Sau3AI	GATC	2 cut(s)	517, 647
Sau96I	GGNCC	1 cut(s)	616
ScrFI	CCNGG	3 cut(s)	345, 620, 1062
SexAI	ACCWGGT	1 cut(s)	1060
SfaNI	GCATC	5 cut(s)	102, 223, 539, 761, 977
SmlI	CTYRAG	3 cut(s)	174, 684, 954
SmoI	CTYRAG	3 cut(s)	174, 684, 954
Sse9I	AATT	7 cut(s)	79, 103, 462, 535, 564, 624, 1123
SsiI	CCGC	2 cut(s)	446, 1051
SspMI	CTAG	3 cut(s)	246, 705, 801
StyD4I	CCNGG	3 cut(s)	343, 618, 1060
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	4 cut(s)	49, 325, 583, 847
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	1 cut(s)	188
TasI	AATT	7 cut(s)	79, 103, 462, 535, 564, 624, 1123
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	560, 842
Tru9I	TTAA	2 cut(s)	560, 842
TscAI	CASTG	2 cut(s)	122, 520
TseFI	GTSAC	4 cut(s)	43, 787, 792, 1075
TseI	GCWGC	5 cut(s)	337, 670, 831, 908, 1053
Tsp45I	GTSAC	4 cut(s)	43, 787, 792, 1075
TspDTI	ATGAA	7 cut(s)	72, 84, 191, 204, 208, 274, 278
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	122, 520
XagI	CCTNNNNNAGG	1 cut(s)	714
XapI	RAATTY	2 cut(s)	79, 103
XceI	RCATGY	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	3 cut(s)	246, 705, 801
ZraI	GACGTC	1 cut(s)	792
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.