Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Reverse (-)

21091751 .. 21094735

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g19920.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGAGGGATTTTCTGGGTTTGAGCTCCAACAATGGTTGTGTGACTCTGAAAGAAGAAACCAATGATGAAGCCAAGAATTCAGCGGTACCTAGAAGTTCAGGGATGCAGTGGTCGTTTTCAAACAAGGTTTCTGCACTTCCGCAGTTCCTGTCTTTCAAGGCTCCTCAAGAAGATAGGCCAAGAAAAGCTGTTCATGATAATACATCTGCATTTATGACTATTTCAACTGCTGATGCTTTTCACTCCAGCCAGAAGTCGTTCTCTGGTGTAATTCAGTTTGATGCACATTCAGTTCATCACTCCCAGATCCCAATTACTTTGAGTTCTCCAGTTCTCCAATCCCATGCTCCTGTTGGGAATAATGGTTCTACCATAAAACTGCAACCACTTGGAGGAGTTCCAGTTTTGTCCCCTCTATTTGCTCATCCTTCTACAACCTCCGTAGTTGGTACCACCGATCTCAGGAACACTTCCAATTCTTCTGGGGCACCTGCTCAGTTAACCATCTTTTATGCTGGTTCTGTGAACGTTTATAATGATATATCTCCTGAGAAGGCCCAAGCTATTATGTTGCTGGCTGGAGATGGATCGTCTCCGGCTCATTGTAAATCACCTTCCGTAGCTCAAGTGCATTCACCGATACCTGGGCCTTCACTAGGAGGTGATGGTTTTTTCGGGAACCAGTCCCATATTAAATGTTCAATCTCTGCGCTTCCAAGCCCTCTTTCCGCAAATTCACATGGTAGTTCTCACGTTGGAGGAACATTTAATAGCACTAATGAATTAGCTATAGTGAAACCAGTAGGAACTTCAGCGTCTCCTATTGACCGCTCAGAGCCTTCTCCAGTAGTCAGTTCAGTGGGATCGGCTATGATGAACCTGATTCCAGCAGTACCTGTGCCTCAAGCACGTAGAGCATCCTTGGCTCGGTTTTTCGAGAAGCGCAAGGAGAGGATGACGAGTACAGGACCATACAATGTCAGCGGGAAATCTCCAGACCGCAGCACGCCCGGATCACAAGGTTTGAGTTTCTCGTTCAACTCTTTCGGTTCTTGTCCTCCCCAAGCTACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

360

Amino Acids

37.52

Weight (kDa)

8.9

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AarI	CACCTGC	1 cut(s)	502
Acc36I	ACCTGC	1 cut(s)	502
Acc65I	GGTACC	2 cut(s)	88, 452
AccB1I	GGYRCC	3 cut(s)	88, 452, 490
AccBSI	CCGCTC	1 cut(s)	834
AciI	CCGC	6 cut(s)	86, 143, 732, 832, 987, 1003
AclI	AACGTT	1 cut(s)	531
AclWI	GGATC	4 cut(s)	304, 598, 874, 1024
AcsI	RAATTY	2 cut(s)	79, 736
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	4 cut(s)	90, 454, 897, 967
AfiI	CCNNNNNNNGG	5 cut(s)	395, 465, 647, 659, 930
AgsI	TTSAA	5 cut(s)	123, 160, 228, 705, 1042
AjnI	CCWGG	1 cut(s)	646
AjuI	GAANNNNNNNTTGG	2 cut(s)	712, 744
AloI	GAACNNNNNNTCC	2 cut(s)	352, 384
AluBI	AGCT	6 cut(s)	27, 191, 566, 626, 791, 1070
AluI	AGCT	6 cut(s)	27, 191, 566, 626, 791, 1070
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	600, 825
AlwI	GGATC	4 cut(s)	304, 598, 874, 1024
AlwNI	CAGNNNCTG	2 cut(s)	151, 899
AoxI	GGCC	3 cut(s)	179, 558, 650
ApeKI	GCWGC	1 cut(s)	1005
ApoI	RAATTY	2 cut(s)	79, 736
Asp700I	GAANNNNTTC	1 cut(s)	260
Asp718I	GGTACC	2 cut(s)	88, 452
AspLEI	GCGC	2 cut(s)	715, 948
AspS9I	GGNCC	3 cut(s)	559, 650, 971
AsuC2I	CCSGG	1 cut(s)	1014
AsuHPI	GGTGA	3 cut(s)	606, 630, 677
AvaII	GGWCC	1 cut(s)	971
BaeGI	GKGCMC	1 cut(s)	493
BanI	GGYRCC	3 cut(s)	88, 452, 490
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	1017
BccI	CCATC	3 cut(s)	515, 581, 662
BciT130I	CCWGG	1 cut(s)	648
BcnI	CCSGG	1 cut(s)	1014
BcoDI	GTCTC	2 cut(s)	600, 825
BfaI	CTAG	2 cut(s)	93, 659
BfmI	CTRYAG	1 cut(s)	792
BfuAI	ACCTGC	1 cut(s)	502
BisI	GCNGC	1 cut(s)	1006
BlsI	GCNGC	1 cut(s)	1007
Bme1390I	CCNGG	2 cut(s)	648, 1014
Bme18I	GGWCC	1 cut(s)	971
BmgT120I	GGNCC	3 cut(s)	559, 650, 971
BmiI	GGNNCC	5 cut(s)	90, 165, 454, 492, 683
BmrFI	CCNGG	2 cut(s)	648, 1014
BmsI	GCATC	4 cut(s)	96, 226, 274, 929
BpmI	CTGGAG	5 cut(s)	232, 315, 603, 831, 981
BpuEI	CTTGAG	3 cut(s)	153, 612, 891
BpuMI	CCSGG	1 cut(s)	1014
BsaAI	YACGTR	1 cut(s)	914
BsaJI	CCNNGG	2 cut(s)	647, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	5 cut(s)	395, 465, 647, 659, 930
Bse1I	ACTGG	5 cut(s)	332, 404, 685, 803, 848
BseBI	CCWGG	1 cut(s)	648
BseDI	CCNNGG	2 cut(s)	647, 924
BseGI	GGATG	4 cut(s)	111, 427, 920, 963
BseLI	CCNNNNNNNGG	5 cut(s)	395, 465, 647, 659, 930
BseMII	CTCAG	4 cut(s)	478, 512, 543, 849
BseNI	ACTGG	5 cut(s)	332, 404, 685, 803, 848
BseRI	GAGGAG	2 cut(s)	156, 411
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	1017
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	181, 560, 652
BshNI	GGYRCC	3 cut(s)	88, 452, 490
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	599, 1014
BslFI	GGGAC	2 cut(s)	397, 673
BslI	CCNNNNNNNGG	5 cut(s)	395, 465, 647, 659, 930
BsmAI	GTCTC	2 cut(s)	600, 825
BsmBI	CGTCTC	2 cut(s)	600, 825
BsmFI	GGGAC	2 cut(s)	397, 673
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	3 cut(s)	181, 560, 652
Bsp1286I	GDGCHC	2 cut(s)	29, 493
Bsp143I	GATC	5 cut(s)	309, 460, 590, 866, 1016
BspACI	CCGC	6 cut(s)	86, 143, 732, 832, 987, 1003
BspANI	GGCC	3 cut(s)	181, 560, 652
BspCNI	CTCAG	4 cut(s)	477, 511, 544, 848
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	5 cut(s)	90, 165, 454, 492, 683
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	4 cut(s)	304, 598, 874, 1024
BspT107I	GGYRCC	3 cut(s)	88, 452, 490
BsrBI	CCGCTC	1 cut(s)	834
BsrI	ACTGG	5 cut(s)	332, 404, 685, 803, 848
BssECI	CCNNGG	2 cut(s)	647, 924
BssMI	GATC	5 cut(s)	309, 460, 590, 866, 1016
BssT1I	CCWWGG	1 cut(s)	924
Bst2UI	CCWGG	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	914
BstC8I	GCNNGC	2 cut(s)	579, 1010
BstDEI	CTNAG	4 cut(s)	464, 498, 552, 835
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	4 cut(s)	111, 427, 920, 963
BstHHI	GCGC	2 cut(s)	715, 948
BstKTI	GATC	5 cut(s)	312, 463, 593, 869, 1019
BstMAI	GTCTC	2 cut(s)	600, 825
BstMBI	GATC	5 cut(s)	309, 460, 590, 866, 1016
BstMWI	GCNNNNNNNGC	2 cut(s)	917, 926
BstNI	CCWGG	1 cut(s)	648
BstSCI	CCNGG	2 cut(s)	646, 1012
BstSFI	CTRYAG	1 cut(s)	792
BstSLI	GKGCMC	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	1017
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	181, 560, 652
BtsCI	GGATG	4 cut(s)	111, 427, 920, 963
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	2 cut(s)	116, 867
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	2 cut(s)	579, 1010
CaiI	CAGNNNCTG	2 cut(s)	151, 899
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	2 cut(s)	715, 948
Cfr13I	GGNCC	3 cut(s)	559, 650, 971
CseI	GACGC	1 cut(s)	807
Csp6I	GTAC	4 cut(s)	89, 453, 896, 966
CviAII	CATG	3 cut(s)	197, 347, 743
CviQI	GTAC	4 cut(s)	89, 453, 896, 966
DdeI	CTNAG	4 cut(s)	464, 498, 552, 835
DpnI	GATC	5 cut(s)	311, 462, 592, 868, 1018
DpnII	GATC	5 cut(s)	309, 460, 590, 866, 1016
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	924
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	971
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	798
EcoICRI	GAGCTC	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	924
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	924
Esp3I	CGTCTC	2 cut(s)	600, 825
FaeI	CATG	3 cut(s)	200, 350, 746
FaqI	GGGAC	2 cut(s)	397, 673
FatI	CATG	3 cut(s)	196, 346, 742
FauI	CCCGC	1 cut(s)	980
Fnu4HI	GCNGC	1 cut(s)	1006
FokI	GGATG	4 cut(s)	118, 414, 907, 970
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	1006
FspBI	CTAG	2 cut(s)	93, 659
GlaI	GCGC	2 cut(s)	714, 947
GluI	GCNGC	1 cut(s)	1006
GsuI	CTGGAG	5 cut(s)	232, 315, 603, 831, 981
HaeIII	GGCC	3 cut(s)	181, 560, 652
HapII	CCGG	2 cut(s)	599, 1014
HgaI	GACGC	1 cut(s)	807
HhaI	GCGC	2 cut(s)	715, 948
Hin1II	CATG	3 cut(s)	200, 350, 746
Hin6I	GCGC	2 cut(s)	713, 946
HinP1I	GCGC	2 cut(s)	713, 946
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	2 cut(s)	46, 886
HpaI	GTTAAC	1 cut(s)	504
HpaII	CCGG	2 cut(s)	599, 1014
HphI	GGTGA	3 cut(s)	606, 630, 677
Hpy166II	GTNNAC	2 cut(s)	504, 529
Hpy188I	TCNGA	2 cut(s)	51, 838
Hpy188III	TCNNGA	7 cut(s)	170, 197, 466, 551, 679, 940, 998
Hpy8I	GTNNAC	2 cut(s)	504, 529
HpyAV	CCTTC	5 cut(s)	441, 550, 627, 663, 852
HpyCH4IV	ACGT	3 cut(s)	531, 756, 913
HpyCH4V	TGCA	6 cut(s)	109, 137, 212, 287, 385, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	917, 926
HpyF3I	CTNAG	4 cut(s)	464, 498, 552, 835
HpySE526I	ACGT	3 cut(s)	531, 756, 913
Hsp92II	CATG	3 cut(s)	200, 350, 746
HspAI	GCGC	2 cut(s)	713, 946
KpnI	GGTACC	2 cut(s)	92, 456
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	5 cut(s)	309, 460, 590, 866, 1016
LmnI	GCTCC	3 cut(s)	32, 169, 355
Lsp1109I	GCAGC	1 cut(s)	1017
LweI	GCATC	4 cut(s)	96, 226, 274, 929
MaeI	CTAG	2 cut(s)	93, 659
MaeII	ACGT	3 cut(s)	531, 756, 913
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	5 cut(s)	311, 462, 592, 868, 1018
MbiI	CCGCTC	1 cut(s)	834
MboI	GATC	5 cut(s)	309, 460, 590, 866, 1016
MboII	GAAGA	3 cut(s)	68, 185, 474
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	2 cut(s)	29, 493
MluCI	AATT	7 cut(s)	79, 273, 315, 478, 736, 785, 1075
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	2 cut(s)	54, 739
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	3 cut(s)	503, 696, 771
MspA1I	CMGCKG	2 cut(s)	86, 987
MspI	CCGG	2 cut(s)	599, 1014
MspR9I	CCNGG	2 cut(s)	648, 1014
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	648
MwoI	GCNNNNNNNGC	2 cut(s)	917, 926
NciI	CCSGG	1 cut(s)	1014
NdeII	GATC	5 cut(s)	309, 460, 590, 866, 1016
NlaIII	CATG	3 cut(s)	200, 350, 746
NlaIV	GGNNCC	5 cut(s)	90, 165, 454, 492, 683
NmuCI	GTSAC	1 cut(s)	43
PagI	TCATGA	1 cut(s)	196
PaqCI	CACCTGC	1 cut(s)	502
PctI	GAATGC	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	886
PkrI	GCNGC	1 cut(s)	1007
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	914
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	5 cut(s)	90, 165, 454, 492, 683
PspPI	GGNCC	3 cut(s)	559, 650, 971
PstNI	CAGNNNCTG	2 cut(s)	151, 899
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	4 cut(s)	90, 454, 897, 967
RsaNI	GTAC	4 cut(s)	89, 453, 896, 966
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	503, 696, 771
SatI	GCNGC	1 cut(s)	1006
Sau3AI	GATC	5 cut(s)	309, 460, 590, 866, 1016
Sau96I	GGNCC	3 cut(s)	559, 650, 971
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	648, 1014
SduI	GDGCHC	2 cut(s)	29, 493
SfaNI	GCATC	4 cut(s)	96, 226, 274, 929
SfcI	CTRYAG	1 cut(s)	792
SinI	GGWCC	1 cut(s)	971
SmlI	CTYRAG	3 cut(s)	168, 627, 906
SmoI	CTYRAG	3 cut(s)	168, 627, 906
Sse9I	AATT	7 cut(s)	79, 273, 315, 478, 736, 785, 1075
SsiI	CCGC	6 cut(s)	86, 143, 732, 832, 987, 1003
SspMI	CTAG	2 cut(s)	93, 659
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	646, 1012
StyI	CCWWGG	1 cut(s)	924
TaiI	ACGT	3 cut(s)	534, 759, 916
TaqI	TCGA	1 cut(s)	939
TasI	AATT	7 cut(s)	79, 273, 315, 478, 736, 785, 1075
TatI	WGTACW	1 cut(s)	965
TfiI	GAWTC	1 cut(s)	886
Tru1I	TTAA	3 cut(s)	503, 696, 771
Tru9I	TTAA	3 cut(s)	503, 696, 771
TscAI	CASTG	2 cut(s)	116, 867
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	1005
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	5 cut(s)	84, 185, 287, 798, 893
TspGWI	ACGGA	2 cut(s)	433, 610
TspRI	CASTG	2 cut(s)	116, 867
VpaK11BI	GGWCC	1 cut(s)	971
XagI	CCTNNNNNAGG	1 cut(s)	657
XapI	RAATTY	2 cut(s)	79, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	2 cut(s)	93, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.