Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Reverse (-)

10032219 .. 10036488

Gene Structure 4270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17550.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAGAGGGATTTCTTGGGTTTGAGTTCAAAGCAGAGCTATGAGACTGTGAAGGAGGAAGCCAGTGATGAACCCAAAAGTTCAGTGGTACCAAGAAGCTCAAATTCAGGTATGCAGTGGTCATTTTCAAACAAGGTTTCTGCACCTCCTCAGTTCCTATCTTTCACAGCTCCTCAAGAAGAAATGCCAAGAGAAGGCGTTCATGACACTTCTTCATTCATGACTATATCAACTGCTGATGCTTTTGATTCTAGCCAGAAATCGTTCTCCAGTGCAATCCAGAGAAATTTCATTCATGAGAAGCAAGCTGGAAACCACTATGGAATGAAAGTCTATTCTATGCAACATCGAGGAGCCAATCAAATAATTCCTATTTCTTTGAGCACCCCTGCTCTCCAACACAATTTTTTTGGGCCAAAAAGCATGGCTGGTTCATCAGTCAAACCACAGCCGCTTGCAGGAGTTCCAATTCTAACCCCTCTATCTGCTGTTCCGTCTAAAAGTTCCGTAGTTGGTACCACTGATCTCAGGAATGCATCCAATTCTTCAGGAGTGCCTGCTCAGTTAACAATTTTCTATGCTGGTGCTGTGAATGTATACCATGATATATCTCCTGAGAAGGCCCAGGCTATTATGTTGCTGGCTGGACATGGATCGTCTCCAGCTTATAATAAGCAACCCTCCACAGCTCAATTGCAAACACCATTCCCTAGTCCTTCCACAGGTGATGGTTTCTTTGGGAACCAGTCAATCGCTGGCCTTGCAAGCCATTCTGTGACGTCACATGCTACTGCTCGCCCTGGAGGAGAATTTAGTAGCAGCAACTCATTAGCGGTATCAAAACCAGTAGCAACTTCAGTATCTTCAATCAATCAGTCAGAGCCTTCAAATGTAGTAGCACAATCTGTTATGACAAACCTCATTCCAGCAGTACCTGTGCCTCAAGCTCGTAAAGCATCCTTGGCTCGATTTTTTGAAAAGCGCAAGGAGAGGATGACGAGCACATTGCCATACAATCTCAGCAAAAAATCTCCAGACTGCAGCACACCAGGTTCCAAGGGCTTGAGTTTGTCTCTCAACTTGTCTGGTTCCTGTCCTCCCCAAGCTACGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

372

Amino Acids

39.24

Weight (kDa)

9.33

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	149 - 179	2.2e-16	tify domain
Jas_motif	PF09425	277 - 301	1e-11	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AatII	GACGTC	1 cut(s)	782
Acc65I	GGTACC	2 cut(s)	88, 515
AccB1I	GGYRCC	2 cut(s)	88, 515
AccI	GTMKAC	1 cut(s)	597
AciI	CCGC	2 cut(s)	452, 833
AclWI	GGATC	1 cut(s)	661
AcsI	RAATTY	3 cut(s)	103, 286, 809
AcuI	CTGAAG	2 cut(s)	531, 840
AcyI	GRCGYC	1 cut(s)	779
AfaI	GTAC	3 cut(s)	90, 517, 933
AfiI	CCNNNNNNNGG	3 cut(s)	194, 458, 722
AgsI	TTSAA	5 cut(s)	30, 129, 867, 888, 977
AjnI	CCWGG	3 cut(s)	624, 799, 1048
AluBI	AGCT	8 cut(s)	39, 99, 170, 308, 665, 689, 947, 1106
AluI	AGCT	8 cut(s)	39, 99, 170, 308, 665, 689, 947, 1106
Alw21I	GWGCWC	2 cut(s)	386, 1004
Alw26I	GTCTC	3 cut(s)	38, 663, 1077
AlwI	GGATC	1 cut(s)	661
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	3 cut(s)	413, 621, 757
ApeKI	GCWGC	2 cut(s)	819, 1041
ApoI	RAATTY	3 cut(s)	103, 286, 809
Asp700I	GAANNNNTTC	2 cut(s)	198, 263
Asp718I	GGTACC	2 cut(s)	88, 515
AspLEI	GCGC	1 cut(s)	984
AspS9I	GGNCC	2 cut(s)	413, 622
AsuHPI	GGTGA	1 cut(s)	737
BaeI	ACNNNNGTAYC	2 cut(s)	843, 876
BanI	GGYRCC	2 cut(s)	88, 515
Bbv12I	GWGCWC	2 cut(s)	386, 1004
BbvI	GCAGC	2 cut(s)	831, 1053
BccI	CCATC	1 cut(s)	722
BcgI	CGANNNNNNTGC	2 cut(s)	988, 1022
BciT130I	CCWGG	3 cut(s)	626, 801, 1050
BcoDI	GTCTC	3 cut(s)	38, 663, 1077
BfaI	CTAG	2 cut(s)	252, 711
BfmI	CTRYAG	1 cut(s)	1039
BisI	GCNGC	3 cut(s)	452, 820, 1042
BlsI	GCNGC	3 cut(s)	453, 821, 1043
Bme1390I	CCNGG	3 cut(s)	626, 801, 1050
BmgT120I	GGNCC	2 cut(s)	413, 622
BmiI	GGNNCC	6 cut(s)	90, 355, 517, 743, 1054, 1090
BmrFI	CCNGG	3 cut(s)	626, 801, 1050
BmsI	GCATC	3 cut(s)	229, 545, 965
BplI	GAGNNNNNCTC	2 cut(s)	1057, 1089
BpmI	CTGGAG	4 cut(s)	253, 645, 822, 1017
BpuEI	CTTGAG	3 cut(s)	159, 927, 1084
BsaHI	GRCGYC	1 cut(s)	779
BsaJI	CCNNGG	4 cut(s)	624, 799, 960, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 458, 722
Bse1I	ACTGG	4 cut(s)	63, 270, 745, 845
Bse3DI	GCAATG	1 cut(s)	1004
BseBI	CCWGG	3 cut(s)	626, 801, 1050
BseDI	CCNNGG	4 cut(s)	624, 799, 960, 1056
BseGI	GGATG	3 cut(s)	536, 956, 999
BseLI	CCNNNNNNNGG	3 cut(s)	194, 458, 722
BseMI	GCAATG	1 cut(s)	1004
BseMII	CTCAG	5 cut(s)	164, 541, 575, 606, 1033
BseNI	ACTGG	4 cut(s)	63, 270, 745, 845
BseRI	GAGGAG	4 cut(s)	138, 162, 366, 819
BseXI	GCAGC	2 cut(s)	831, 1053
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	415, 623, 759
BshNI	GGYRCC	2 cut(s)	88, 515
BsiHKAI	GWGCWC	2 cut(s)	386, 1004
BslI	CCNNNNNNNGG	3 cut(s)	194, 458, 722
BsmAI	GTCTC	3 cut(s)	38, 663, 1077
BsmBI	CGTCTC	1 cut(s)	663
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	415, 623, 759
Bsp1286I	GDGCHC	2 cut(s)	386, 1004
Bsp143I	GATC	2 cut(s)	523, 653
BspACI	CCGC	2 cut(s)	452, 833
BspANI	GGCC	3 cut(s)	415, 623, 759
BspCNI	CTCAG	5 cut(s)	163, 540, 574, 607, 1032
BspHI	TCATGA	3 cut(s)	202, 219, 295
BspLI	GGNNCC	6 cut(s)	90, 355, 517, 743, 1054, 1090
BspMAI	CTGCAG	1 cut(s)	1043
BspPI	GGATC	1 cut(s)	661
BspT107I	GGYRCC	2 cut(s)	88, 515
BsrDI	GCAATG	1 cut(s)	1004
BsrI	ACTGG	4 cut(s)	63, 270, 745, 845
BssECI	CCNNGG	4 cut(s)	624, 799, 960, 1056
BssMI	GATC	2 cut(s)	523, 653
BssNAI	GTATAC	1 cut(s)	598
BssNI	GRCGYC	1 cut(s)	779
BssT1I	CCWWGG	2 cut(s)	960, 1056
Bst1107I	GTATAC	1 cut(s)	598
Bst2UI	CCWGG	3 cut(s)	626, 801, 1050
Bst4CI	ACNGT	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	779
BstC8I	GCNNGC	7 cut(s)	306, 456, 558, 642, 757, 766, 796
BstDEI	CTNAG	5 cut(s)	150, 527, 561, 615, 1019
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	3 cut(s)	536, 956, 999
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	2 cut(s)	526, 656
BstMAI	GTCTC	3 cut(s)	38, 663, 1077
BstMBI	GATC	2 cut(s)	523, 653
BstMWI	GCNNNNNNNGC	4 cut(s)	761, 765, 953, 962
BstNI	CCWGG	3 cut(s)	626, 801, 1050
BstNSI	RCATGY	1 cut(s)	788
BstSCI	CCNGG	3 cut(s)	624, 799, 1048
BstSFI	CTRYAG	1 cut(s)	1039
BstV1I	GCAGC	2 cut(s)	831, 1053
BstZ17I	GTATAC	1 cut(s)	598
BsuRI	GGCC	3 cut(s)	415, 623, 759
BtsCI	GGATG	3 cut(s)	536, 956, 999
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	5 cut(s)	70, 90, 122, 277, 519
Cac8I	GCNNGC	7 cut(s)	306, 456, 558, 642, 757, 766, 796
CaiI	CAGNNNCTG	1 cut(s)	935
CciI	TCATGA	3 cut(s)	202, 219, 295
CfoI	GCGC	1 cut(s)	984
Cfr13I	GGNCC	2 cut(s)	413, 622
CsiI	ACCWGGT	1 cut(s)	1048
Csp6I	GTAC	3 cut(s)	89, 516, 932
CviAII	CATG	7 cut(s)	203, 220, 296, 424, 602, 650, 785
CviQI	GTAC	3 cut(s)	89, 516, 932
DdeI	CTNAG	5 cut(s)	150, 527, 561, 615, 1019
DpnI	GATC	2 cut(s)	525, 655
DpnII	GATC	2 cut(s)	523, 653
Eco130I	CCWWGG	2 cut(s)	960, 1056
Eco57I	CTGAAG	2 cut(s)	531, 840
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoRII	CCWGG	3 cut(s)	624, 799, 1048
EcoT14I	CCWWGG	2 cut(s)	960, 1056
EcoT22I	ATGCAT	1 cut(s)	538
ErhI	CCWWGG	2 cut(s)	960, 1056
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	7 cut(s)	206, 223, 299, 427, 605, 653, 788
FatI	CATG	7 cut(s)	202, 219, 295, 423, 601, 649, 784
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	3 cut(s)	452, 820, 1042
FokI	GGATG	3 cut(s)	523, 943, 1006
Fsp4HI	GCNGC	3 cut(s)	452, 820, 1042
FspBI	CTAG	2 cut(s)	252, 711
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	3 cut(s)	452, 820, 1042
GsuI	CTGGAG	4 cut(s)	253, 645, 822, 1017
HaeIII	GGCC	3 cut(s)	415, 623, 759
HhaI	GCGC	1 cut(s)	984
Hin1I	GRCGYC	1 cut(s)	779
Hin1II	CATG	7 cut(s)	206, 223, 299, 427, 605, 653, 788
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	1 cut(s)	248
HpaI	GTTAAC	1 cut(s)	567
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	2 cut(s)	567, 598
Hpy188I	TCNGA	1 cut(s)	880
Hpy188III	TCNNGA	9 cut(s)	176, 203, 220, 280, 296, 529, 549, 614, 1034
Hpy8I	GTNNAC	2 cut(s)	567, 598
HpyAV	CCTTC	5 cut(s)	46, 188, 613, 726, 894
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	779
HpyCH4V	TGCA	9 cut(s)	115, 143, 275, 343, 458, 536, 697, 764, 1041
HpyF10VI	GCNNNNNNNGC	4 cut(s)	761, 765, 953, 962
HpyF3I	CTNAG	5 cut(s)	150, 527, 561, 615, 1019
HpySE526I	ACGT	1 cut(s)	779
Hsp92I	GRCGYC	1 cut(s)	779
Hsp92II	CATG	7 cut(s)	206, 223, 299, 427, 605, 653, 788
HspAI	GCGC	1 cut(s)	982
KpnI	GGTACC	2 cut(s)	92, 519
KspAI	GTTAAC	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	523, 653
LmnI	GCTCC	2 cut(s)	175, 353
Lsp1109I	GCAGC	2 cut(s)	831, 1053
LweI	GCATC	3 cut(s)	229, 545, 965
MabI	ACCWGGT	1 cut(s)	1048
MaeI	CTAG	2 cut(s)	252, 711
MaeII	ACGT	1 cut(s)	779
MaeIII	GTNAC	2 cut(s)	775, 780
MalI	GATC	2 cut(s)	525, 655
MboI	GATC	2 cut(s)	523, 653
MboII	GAAGA	4 cut(s)	191, 204, 537, 855
MfeI	CAATTG	1 cut(s)	692
MhlI	GDGCHC	2 cut(s)	386, 1004
MmeI	TCCRAC	1 cut(s)	421
Mph1103I	ATGCAT	1 cut(s)	538
MroXI	GAANNNNTTC	2 cut(s)	198, 263
MseI	TTAA	1 cut(s)	566
MspR9I	CCNGG	3 cut(s)	626, 801, 1050
MunI	CAATTG	1 cut(s)	692
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	3 cut(s)	626, 801, 1050
MwoI	GCNNNNNNNGC	4 cut(s)	761, 765, 953, 962
NdeII	GATC	2 cut(s)	523, 653
NlaIII	CATG	7 cut(s)	206, 223, 299, 427, 605, 653, 788
NlaIV	GGNNCC	6 cut(s)	90, 355, 517, 743, 1054, 1090
NmuCI	GTSAC	2 cut(s)	775, 780
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	1 cut(s)	788
PagI	TCATGA	3 cut(s)	202, 219, 295
PctI	GAATGC	1 cut(s)	538
PdmI	GAANNNNTTC	2 cut(s)	198, 263
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	453, 821, 1043
PsiI	TTATAA	1 cut(s)	669
Psp6I	CCWGG	3 cut(s)	624, 799, 1048
PspGI	CCWGG	3 cut(s)	624, 799, 1048
PspN4I	GGNNCC	6 cut(s)	90, 355, 517, 743, 1054, 1090
PspPI	GGNCC	2 cut(s)	413, 622
PstI	CTGCAG	1 cut(s)	1043
PstNI	CAGNNNCTG	1 cut(s)	935
RsaI	GTAC	3 cut(s)	90, 517, 933
RsaNI	GTAC	3 cut(s)	89, 516, 932
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	3 cut(s)	452, 820, 1042
Sau3AI	GATC	2 cut(s)	523, 653
Sau96I	GGNCC	2 cut(s)	413, 622
ScrFI	CCNGG	3 cut(s)	626, 801, 1050
SduI	GDGCHC	2 cut(s)	386, 1004
SexAI	ACCWGGT	1 cut(s)	1048
SfaNI	GCATC	3 cut(s)	229, 545, 965
SfcI	CTRYAG	1 cut(s)	1039
SmlI	CTYRAG	3 cut(s)	174, 942, 1063
SmoI	CTYRAG	3 cut(s)	174, 942, 1063
SsiI	CCGC	2 cut(s)	452, 833
SspMI	CTAG	2 cut(s)	252, 711
StyD4I	CCNGG	3 cut(s)	624, 799, 1048
StyI	CCWWGG	2 cut(s)	960, 1056
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	782
TaqI	TCGA	2 cut(s)	349, 967
TauI	GCSGC	1 cut(s)	454
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	5 cut(s)	70, 90, 122, 277, 526
TseFI	GTSAC	2 cut(s)	775, 780
TseI	GCWGC	2 cut(s)	819, 1041
Tsp45I	GTSAC	2 cut(s)	775, 780
TspDTI	ATGAA	8 cut(s)	84, 191, 204, 208, 280, 284, 341, 423
TspGWI	ACGGA	2 cut(s)	483, 496
TspRI	CASTG	5 cut(s)	70, 90, 122, 277, 526
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	3 cut(s)	103, 286, 809
XceI	RCATGY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	2 cut(s)	82, 752
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	2 cut(s)	198, 263
XspI	CTAG	2 cut(s)	252, 711
ZraI	GACGTC	1 cut(s)	780
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.