Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Forward (+)

862523 .. 866978

Gene Structure 4456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG012800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCAGTGGTCGTTTTCAAACAAGGTTTCTGCACTTCCTCAGTTCCTATCTTTCACGGCTCCTCAAGAAGAGATGTCGAGAAAAGGTGTTCATGACACATCTTCATTCATGACTATATCAACTGCTGATGCTTTTGAATCTAGCCGGAAGTCGTCCTCCGGTGTAATCCAGCACCCAGGAGCCAATCAAATAATCCCTATTTCTTTGAGTACTCCTGTTCTCCAAAACAATCTTTTTGGGCAGAAAAACATGGTTGGTTCAACAATAAAACCACAGCCGCTTGCAGGAGTTCCAATTCTAACCCCTGTATCTGCTCTTCCGTCTAAAAGTTCGGTAGTTGGTACCACTGATCTCAGGAATGCATCCAATTCTTCAGGCGTGCCTGCTCAGTTAACAATTTTCTATGCTGGTACCGTGAATGTTTACCATGATATATCTCCTGAGAAGGCCCAGGCTATTATGTTGCTGGCTGGAAATGGATCTTCTCCAGCTCATAGTAAGCTGCCTTCCACAGCTCAAGTGCAAACACCATTCCCTAGTCCTTCCACAGGTGATGGTTTCTTTAGGAACCAGTCTCATATTGCATCATCAATCTCTGGCCTTGCAAGCCCTCTTTCTGTGACGTCACATGCTAGTTCTCGCCCCAGAGGAGCATTTAGTAGCAGCAACACTTTAACTGTATCAAAACCAGTATCAACTTCAGTATCTTCAATCAATCACTCAGAGCCTTCAAAAGTGGCAGCACAATCTGTTATGACAAACCTCATTCCAGCAGTACCTGTGCCTCAAGCTCGTAAAGCATCCTTGGCTCGGTTTTTTGAGAAGCGCAAGGAGAGGATGACAAGCACATTGCCATACAATCTCAGCAAAAAATCTCCAGACTGCAGCACACCAGGTTCCGAGGGCGTGACCTTCTCTTTCAACTCTTCTGGTTCCTGTCCTCCCCAAGCCATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

319

Amino Acids

33.45

Weight (kDa)

9.92

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	128 - 158	1.8e-16	tify domain
Jas_motif	PF09425	262 - 286	9.6e-12	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	626
Acc65I	GGTACC	2 cut(s)	341, 410
AccB1I	GGYRCC	2 cut(s)	341, 410
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	487
AcuI	CTGAAG	2 cut(s)	357, 684
AcyI	GRCGYC	1 cut(s)	623
AfaI	GTAC	4 cut(s)	211, 343, 412, 777
AfiI	CCNNNNNNNGG	3 cut(s)	284, 548, 810
AgsI	TTSAA	6 cut(s)	18, 137, 261, 711, 732, 922
AjnI	CCWGG	3 cut(s)	175, 450, 892
AluBI	AGCT	4 cut(s)	491, 502, 515, 791
AluI	AGCT	4 cut(s)	491, 502, 515, 791
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	487
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	2 cut(s)	447, 598
ApeKI	GCWGC	4 cut(s)	502, 663, 740, 885
Asp718I	GGTACC	2 cut(s)	341, 410
AspLEI	GCGC	1 cut(s)	828
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	563
BaeI	ACNNNNGTAYC	4 cut(s)	291, 324, 687, 720
BanI	GGYRCC	2 cut(s)	341, 410
BarI	GAAGNNNNNNTAC	4 cut(s)	300, 332, 490, 522
BbvI	GCAGC	4 cut(s)	489, 675, 752, 897
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	3 cut(s)	177, 452, 894
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	3 cut(s)	141, 537, 633
BfmI	CTRYAG	1 cut(s)	883
BisI	GCNGC	5 cut(s)	278, 503, 664, 741, 886
BlsI	GCNGC	5 cut(s)	279, 504, 665, 742, 887
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	3 cut(s)	177, 452, 894
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	7 cut(s)	60, 181, 343, 412, 569, 898, 934
BmrFI	CCNGG	3 cut(s)	177, 452, 894
BmsI	GCATC	4 cut(s)	118, 371, 593, 809
BpmI	CTGGAG	2 cut(s)	471, 861
BpuEI	CTTGAG	3 cut(s)	48, 501, 771
BsaHI	GRCGYC	1 cut(s)	623
BsaJI	CCNNGG	4 cut(s)	175, 450, 804, 900
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 548, 810
Bse1I	ACTGG	2 cut(s)	571, 689
Bse3DI	GCAATG	1 cut(s)	848
BseBI	CCWGG	3 cut(s)	177, 452, 894
BseDI	CCNNGG	4 cut(s)	175, 450, 804, 900
BseGI	GGATG	3 cut(s)	362, 800, 843
BseLI	CCNNNNNNNGG	3 cut(s)	284, 548, 810
BseMI	GCAATG	1 cut(s)	848
BseMII	CTCAG	6 cut(s)	53, 367, 401, 432, 735, 877
BseNI	ACTGG	2 cut(s)	571, 689
BseRI	GAGGAG	2 cut(s)	51, 663
BseXI	GCAGC	4 cut(s)	489, 675, 752, 897
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	449, 600
BshNI	GGYRCC	2 cut(s)	341, 410
BsiSI	CCGG	2 cut(s)	145, 159
BslI	CCNNNNNNNGG	3 cut(s)	284, 548, 810
BsmAI	GTCTC	1 cut(s)	579
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	449, 600
Bsp143I	GATC	2 cut(s)	349, 479
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	2 cut(s)	449, 600
BspCNI	CTCAG	6 cut(s)	52, 366, 400, 433, 734, 876
BspHI	TCATGA	2 cut(s)	91, 108
BspLI	GGNNCC	7 cut(s)	60, 181, 343, 412, 569, 898, 934
BspMAI	CTGCAG	1 cut(s)	887
BspPI	GGATC	1 cut(s)	487
BspQI	GCTCTTC	1 cut(s)	321
BspT107I	GGYRCC	2 cut(s)	341, 410
BsrDI	GCAATG	1 cut(s)	848
BsrI	ACTGG	2 cut(s)	571, 689
BssECI	CCNNGG	4 cut(s)	175, 450, 804, 900
BssMI	GATC	2 cut(s)	349, 479
BssNI	GRCGYC	1 cut(s)	623
BssT1I	CCWWGG	1 cut(s)	804
Bst2UI	CCWGG	3 cut(s)	177, 452, 894
Bst4CI	ACNGT	2 cut(s)	415, 679
Bst6I	CTCTTC	3 cut(s)	63, 321, 931
BstACI	GRCGYC	1 cut(s)	623
BstC8I	GCNNGC	5 cut(s)	282, 380, 384, 468, 607
BstDEI	CTNAG	6 cut(s)	39, 353, 387, 441, 721, 863
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstF5I	GGATG	3 cut(s)	362, 800, 843
BstHHI	GCGC	1 cut(s)	828
BstKTI	GATC	2 cut(s)	352, 482
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	2 cut(s)	349, 479
BstMWI	GCNNNNNNNGC	3 cut(s)	606, 797, 806
BstNI	CCWGG	3 cut(s)	177, 452, 894
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	3 cut(s)	175, 450, 892
BstSFI	CTRYAG	1 cut(s)	883
BstV1I	GCAGC	4 cut(s)	489, 675, 752, 897
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	449, 600
BtsCI	GGATG	3 cut(s)	362, 800, 843
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 345
Cac8I	GCNNGC	5 cut(s)	282, 380, 384, 468, 607
CaiI	CAGNNNCTG	1 cut(s)	779
CciI	TCATGA	2 cut(s)	91, 108
CfoI	GCGC	1 cut(s)	828
Cfr13I	GGNCC	1 cut(s)	448
CsiI	ACCWGGT	1 cut(s)	892
Csp6I	GTAC	4 cut(s)	210, 342, 411, 776
CviAII	CATG	5 cut(s)	92, 109, 250, 428, 629
CviQI	GTAC	4 cut(s)	210, 342, 411, 776
DdeI	CTNAG	6 cut(s)	39, 353, 387, 441, 721, 863
DpnI	GATC	2 cut(s)	351, 481
DpnII	GATC	2 cut(s)	349, 479
Eam1104I	CTCTTC	3 cut(s)	63, 321, 931
EarI	CTCTTC	3 cut(s)	63, 321, 931
Eco130I	CCWWGG	1 cut(s)	804
Eco57I	CTGAAG	2 cut(s)	357, 684
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoRII	CCWGG	3 cut(s)	175, 450, 892
EcoT14I	CCWWGG	1 cut(s)	804
EcoT22I	ATGCAT	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	5 cut(s)	95, 112, 253, 431, 632
FatI	CATG	5 cut(s)	91, 108, 249, 427, 628
Fnu4HI	GCNGC	5 cut(s)	278, 503, 664, 741, 886
FokI	GGATG	3 cut(s)	349, 787, 850
Fsp4HI	GCNGC	5 cut(s)	278, 503, 664, 741, 886
FspBI	CTAG	3 cut(s)	141, 537, 633
GlaI	GCGC	1 cut(s)	827
GluI	GCNGC	5 cut(s)	278, 503, 664, 741, 886
GsuI	CTGGAG	2 cut(s)	471, 861
HaeIII	GGCC	2 cut(s)	449, 600
HapII	CCGG	2 cut(s)	145, 159
HhaI	GCGC	1 cut(s)	828
Hin1I	GRCGYC	1 cut(s)	623
Hin1II	CATG	5 cut(s)	95, 112, 253, 431, 632
Hin6I	GCGC	1 cut(s)	826
HinP1I	GCGC	1 cut(s)	826
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	1 cut(s)	137
HpaI	GTTAAC	1 cut(s)	393
HpaII	CCGG	2 cut(s)	145, 159
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	393, 424
Hpy188I	TCNGA	2 cut(s)	724, 901
Hpy188III	TCNNGA	7 cut(s)	65, 78, 92, 109, 355, 440, 878
Hpy8I	GTNNAC	2 cut(s)	393, 424
HpyAV	CCTTC	5 cut(s)	439, 516, 552, 738, 922
HpyCH4III	ACNGT	2 cut(s)	415, 679
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	8 cut(s)	4, 32, 284, 362, 523, 584, 605, 885
HpyF10VI	GCNNNNNNNGC	3 cut(s)	606, 797, 806
HpyF3I	CTNAG	6 cut(s)	39, 353, 387, 441, 721, 863
HpySE526I	ACGT	1 cut(s)	623
Hsp92I	GRCGYC	1 cut(s)	623
Hsp92II	CATG	5 cut(s)	95, 112, 253, 431, 632
HspAI	GCGC	1 cut(s)	826
KpnI	GGTACC	2 cut(s)	345, 414
KspAI	GTTAAC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	349, 479
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	3 cut(s)	64, 179, 650
Lsp1109I	GCAGC	4 cut(s)	489, 675, 752, 897
LweI	GCATC	4 cut(s)	118, 371, 593, 809
MabI	ACCWGGT	1 cut(s)	892
MaeI	CTAG	3 cut(s)	141, 537, 633
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	3 cut(s)	619, 624, 907
MalI	GATC	2 cut(s)	351, 481
MboI	GATC	2 cut(s)	349, 479
MboII	GAAGA	7 cut(s)	80, 93, 308, 363, 474, 699, 918
MflI	RGATCY	1 cut(s)	479
MluCI	AATT	4 cut(s)	294, 367, 396, 955
Mph1103I	ATGCAT	1 cut(s)	364
MseI	TTAA	2 cut(s)	392, 674
MspI	CCGG	2 cut(s)	145, 159
MspR9I	CCNGG	3 cut(s)	177, 452, 894
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	177, 452, 894
MwoI	GCNNNNNNNGC	3 cut(s)	606, 797, 806
NdeII	GATC	2 cut(s)	349, 479
NlaIII	CATG	5 cut(s)	95, 112, 253, 431, 632
NlaIV	GGNNCC	7 cut(s)	60, 181, 343, 412, 569, 898, 934
NmuCI	GTSAC	3 cut(s)	619, 624, 907
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	1 cut(s)	632
PagI	TCATGA	2 cut(s)	91, 108
PciSI	GCTCTTC	1 cut(s)	321
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	279, 504, 665, 742, 887
Psp6I	CCWGG	3 cut(s)	175, 450, 892
PspGI	CCWGG	3 cut(s)	175, 450, 892
PspN4I	GGNNCC	7 cut(s)	60, 181, 343, 412, 569, 898, 934
PspPI	GGNCC	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	887
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	479
RsaI	GTAC	4 cut(s)	211, 343, 412, 777
RsaNI	GTAC	4 cut(s)	210, 342, 411, 776
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	392, 674
SatI	GCNGC	5 cut(s)	278, 503, 664, 741, 886
Sau3AI	GATC	2 cut(s)	349, 479
Sau96I	GGNCC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	177, 452, 894
SexAI	ACCWGGT	1 cut(s)	892
SfaNI	GCATC	4 cut(s)	118, 371, 593, 809
SfcI	CTRYAG	1 cut(s)	883
SmlI	CTYRAG	3 cut(s)	63, 516, 786
SmoI	CTYRAG	3 cut(s)	63, 516, 786
Sse9I	AATT	4 cut(s)	294, 367, 396, 955
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	3 cut(s)	141, 537, 633
StyD4I	CCNGG	3 cut(s)	175, 450, 892
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	2 cut(s)	415, 679
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	1 cut(s)	77
TasI	AATT	4 cut(s)	294, 367, 396, 955
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	392, 674
Tru9I	TTAA	2 cut(s)	392, 674
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	3 cut(s)	619, 624, 907
TseI	GCWGC	4 cut(s)	502, 663, 740, 885
Tsp45I	GTSAC	3 cut(s)	619, 624, 907
TspDTI	ATGAA	3 cut(s)	80, 93, 97
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	352
XagI	CCTNNNNNAGG	1 cut(s)	546
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	3 cut(s)	141, 537, 633
ZraI	GACGTC	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	211
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.