Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001273

Physical Location & Seq

Genomic Coordinates Reverse (-)

2910689 .. 2913587

Gene Structure 2899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGTTTGAGCTCGAAAGAGTCGGTGGCTGTGATCAAGGAGGAGAATAATGACGATGCTTGCAGAGACTCTGGTGGGTTGACCAGAGGTGCTGGTTCAAATTGGCCCTTCTCAAACAAGGTTTCTGCAATTCCTCATCATTTGATGTCTTTCAAAGGTGCTCAAGAAGGTAAGACTCAAAAGATGGTACCTGAGTCCTTCTTGTCTTCCGGATTTATGCCTGTCTCAACTTCAGACGCATTTGATCCTTGTCAGAAACGACCTACATGTGATGCACAGAAGTACTTCAATCACGATAGGCAAGGTGGCACTCACTTTACCCTGACAGCTTATCCTATGCAACATGATGTGCATTCTGTACACCGTCCTTATGACGTGAAGATGATTTCAGTTTCCAATCAAGGTATTTCTGTTCCTATGGGCAATCCATACTTGAAGAATCATTTTGCATCTATGGGTCAGAATTTTGCTGTTACTACCACCAAGCAACAATTATTTGGAGGAATTCCTGTTACTACTCCATATTCAGTTCCTCCAAGTTCAGGGTCCATTGTTGGAACCACTGAACCATGGAACAACGTCAAGACATTTGGGTCTCCTTCTCAGATGACAATCTTCTATGCTGGTAGTGTGAATGTCTATCATGATATCTCCCCTGAGAAGGCTCAGGCTATGATGATTTTAGCTCAGAATGGTTCTTCCATCCCTTCGAATGGTGTACGCTCAAAAGCTGAAGCACCAAGAGCAAAGTTGGCCGTGGAAGATGGTGTTCCAGTGAAGCAGACTATAAATACACCACCTTCTGCTTTTCCTAGTCCCTTATCTGTTTCTTCACATACTGGTACCCAATCAGTAAGTGGATCCACAAGCACTGATGAACTGATGGCAGCTAAAACCACAGGGCTTCCAACGACTCCTGTTAGTAAAGTGGAGCCTCCAAAAACAGCAAATGCAGTTAAATCTGTTGCTGCAACTTCTATGGTTCATTCTGCTATTCCACAAGCTCGCAAAGCATCCTTGGCTCGATTTTTAGGGAAACGCAAGGAAAGGGTAATAAATTCAGCACCATACAACTTGAGCAAGAAATCTGCAGAAGGCAGCAACCCAGAATCTAATGGAATGAATTCCTCTGCAAGCAAAGGAGAACAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

385

Amino Acids

40.82

Weight (kDa)

9.4

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	199 - 229	8.4e-14	tify domain
Jas_motif	PF09425	333 - 357	1.5e-12	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48500 AT1G48500 AT1G48500 AT3G17860 AT3G17860 AT3G17860 AT3G17860
fragaria_vesca	FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_4g33850 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550 FvH4_5g17550
malus_domestica	MD06G1228900.v1.1 MD13G1030000.v1.1 MD14G1238100.v1.1 MD16G1020800.v1.1
prunus_persica	Prupe.1G331500_v2.0.a1 Prupe.1G331500_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1 Prupe.5G235300_v2.0.a1
pyrus_communis	pycom06g20520 pycom13g01830 pycom14g19920 pycom16g01860
rosa_chinensis	RchiOBHm_Chr4g0443341 RchiOBHm_Chr7g0178101
rosa_laevigata	RLG00000005471 RLG00000005936
rosa_multiflora	Rmu_sc0000425.1_g000009 Rmu_ssc0000122.1_g000009
rosa_roxburghii	Rroxscaffold_3G00275180 Rroxscaffold_5G00383920
rosa_rugosa	Rorug04G0345600 Rorug06G0413500 Rorug06G0413500 Rorug06G0413500
rosa_samantha	Rh4AG400800 Rh4BG412400 Rh4CG427700 Rh4DG407800 Rh7AG012800 Rh7BG012700 Rh7CG012700 Rh7DG013000
rosa_wichuraiana	Rw4G034570 Rw7G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	592
Acc65I	GGTACC	2 cut(s)	187, 842
AccB1I	GGYRCC	2 cut(s)	187, 842
AccIII	TCCGGA	1 cut(s)	209
AclWI	GGATC	3 cut(s)	239, 855, 868
AcoI	YGGCCR	1 cut(s)	753
AcsI	RAATTY	4 cut(s)	463, 504, 1057, 1123
AcuI	CTGAAG	2 cut(s)	216, 753
AfaI	GTAC	5 cut(s)	189, 284, 360, 720, 844
AfiI	CCNNNNNNNGG	3 cut(s)	542, 661, 713
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	4 cut(s)	99, 154, 289, 436
AjiI	CACGTC	1 cut(s)	376
AluBI	AGCT	6 cut(s)	12, 329, 686, 731, 890, 1004
AluI	AGCT	6 cut(s)	12, 329, 686, 731, 890, 1004
Alw21I	GWGCWC	2 cut(s)	14, 163
Alw26I	GTCTC	3 cut(s)	60, 229, 600
AlwI	GGATC	3 cut(s)	239, 855, 868
Aor13HI	TCCGGA	1 cut(s)	209
AoxI	GGCC	2 cut(s)	104, 753
ApeKI	GCWGC	3 cut(s)	887, 968, 1098
ApoI	RAATTY	4 cut(s)	463, 504, 1057, 1123
Asp700I	GAANNNNTTC	2 cut(s)	284, 1123
Asp718I	GGTACC	2 cut(s)	187, 842
AspS9I	GGNCC	2 cut(s)	105, 546
AsuII	TTCGAA	1 cut(s)	710
AvaII	GGWCC	1 cut(s)	546
BaeI	ACNNNNGTAYC	2 cut(s)	179, 212
BamHI	GGATCC	1 cut(s)	860
BanI	GGYRCC	2 cut(s)	187, 842
BanII	GRGCYC	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	14, 163
BbvI	GCAGC	3 cut(s)	899, 955, 1110
BccI	CCATC	4 cut(s)	178, 710, 758, 877
BceAI	ACGGC	1 cut(s)	740
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	60, 229, 600
BfaI	CTAG	1 cut(s)	813
BfmI	CTRYAG	1 cut(s)	1089
BisI	GCNGC	3 cut(s)	888, 969, 1099
BlsI	GCNGC	3 cut(s)	889, 970, 1100
BmcAI	AGTACT	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	546
BmgBI	CACGTC	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	105, 546
BmiI	GGNNCC	6 cut(s)	189, 547, 559, 844, 862, 933
BmsI	GCATC	4 cut(s)	46, 262, 458, 1022
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	710
BpuEI	CTTGAG	2 cut(s)	147, 1096
BsaBI	GATNNNNATC	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	569, 756, 1017
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	542, 661, 713
Bse1I	ACTGG	2 cut(s)	773, 844
Bse8I	GATNNNNATC	1 cut(s)	611
BseAI	TCCGGA	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	569, 756, 1017
BseGI	GGATG	2 cut(s)	702, 1013
BseJI	GATNNNNATC	1 cut(s)	611
BseLI	CCNNNNNNNGG	3 cut(s)	542, 661, 713
BseMII	CTCAG	5 cut(s)	183, 617, 648, 680, 701
BseNI	ACTGG	2 cut(s)	773, 844
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	899, 955, 1110
BshFI	GGCC	2 cut(s)	106, 755
BshNI	GGYRCC	2 cut(s)	187, 842
BsiHKAI	GWGCWC	2 cut(s)	14, 163
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	801
BslI	CCNNNNNNNGG	3 cut(s)	542, 661, 713
BsmAI	GTCTC	3 cut(s)	60, 229, 600
BsmFI	GGGAC	1 cut(s)	801
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	106, 755
Bso31I	GGTCTC	1 cut(s)	600
Bsp119I	TTCGAA	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	14, 163
Bsp13I	TCCGGA	1 cut(s)	209
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	33, 244, 860
Bsp19I	CCATGG	1 cut(s)	569
BspANI	GGCC	2 cut(s)	106, 755
BspCNI	CTCAG	5 cut(s)	184, 616, 649, 679, 700
BspEI	TCCGGA	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	6 cut(s)	189, 547, 559, 844, 862, 933
BspMAI	CTGCAG	1 cut(s)	1093
BspPI	GGATC	3 cut(s)	239, 855, 868
BspT104I	TTCGAA	1 cut(s)	710
BspT107I	GGYRCC	2 cut(s)	187, 842
BspTNI	GGTCTC	1 cut(s)	600
BsrGI	TGTACA	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	773, 844
BssECI	CCNNGG	3 cut(s)	569, 756, 1017
BssMI	GATC	3 cut(s)	33, 244, 860
BssT1I	CCWWGG	2 cut(s)	569, 1017
Bst4CI	ACNGT	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	358
BstBI	TTCGAA	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	61, 1006, 1135
BstDEI	CTNAG	5 cut(s)	192, 603, 657, 666, 687
BstDSI	CCRYGG	2 cut(s)	569, 756
BstF5I	GGATG	2 cut(s)	702, 1013
BstKTI	GATC	3 cut(s)	36, 247, 863
BstMAI	GTCTC	3 cut(s)	60, 229, 600
BstMBI	GATC	3 cut(s)	33, 244, 860
BstMWI	GCNNNNNNNGC	4 cut(s)	743, 752, 1010, 1019
BstNSI	RCATGY	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	1089
BstV1I	GCAGC	3 cut(s)	899, 955, 1110
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	860
BstYI	RGATCY	1 cut(s)	860
BsuRI	GGCC	2 cut(s)	106, 755
BtgI	CCRYGG	2 cut(s)	569, 756
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	702, 1013
BtsIMutI	CAGTG	3 cut(s)	561, 780, 870
Cac8I	GCNNGC	3 cut(s)	61, 1006, 1135
CciI	TCATGA	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	105, 546
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	5 cut(s)	188, 283, 359, 719, 843
CviAII	CATG	4 cut(s)	267, 344, 570, 644
CviQI	GTAC	5 cut(s)	188, 283, 359, 719, 843
DdeI	CTNAG	5 cut(s)	192, 603, 657, 666, 687
DpnI	GATC	3 cut(s)	35, 246, 862
DpnII	GATC	3 cut(s)	33, 244, 860
DrdI	GACNNNNNNGTC	1 cut(s)	592
DseDI	GACNNNNNNGTC	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	569, 1017
Eco24I	GRGCYC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	600
Eco32I	GATATC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	546
Eco53kI	GAGCTC	1 cut(s)	12
Eco57I	CTGAAG	2 cut(s)	216, 753
EcoICRI	GAGCTC	1 cut(s)	12
EcoRI	GAATTC	2 cut(s)	504, 1123
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	2 cut(s)	569, 1017
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	2 cut(s)	569, 1017
FaeI	CATG	4 cut(s)	270, 347, 573, 647
FaqI	GGGAC	1 cut(s)	801
FatI	CATG	4 cut(s)	266, 343, 569, 643
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	888, 969, 1099
FokI	GGATG	2 cut(s)	689, 1000
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	3 cut(s)	888, 969, 1099
FspBI	CTAG	1 cut(s)	813
GluI	GCNGC	3 cut(s)	888, 969, 1099
HaeIII	GGCC	2 cut(s)	106, 755
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	4 cut(s)	270, 347, 573, 647
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	7 cut(s)	20, 68, 175, 194, 439, 913, 1109
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	3 cut(s)	81, 361, 719
Hpy188I	TCNGA	5 cut(s)	235, 255, 462, 606, 690
Hpy188III	TCNNGA	5 cut(s)	164, 210, 293, 583, 644
Hpy8I	GTNNAC	3 cut(s)	81, 361, 719
HpyAV	CCTTC	8 cut(s)	118, 161, 208, 609, 655, 717, 810, 1088
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	2 cut(s)	375, 579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	743, 752, 1010, 1019
HpyF3I	CTNAG	5 cut(s)	192, 603, 657, 666, 687
HpySE526I	ACGT	2 cut(s)	375, 579
Hsp92II	CATG	4 cut(s)	270, 347, 573, 647
Kpn2I	TCCGGA	1 cut(s)	209
KpnI	GGTACC	2 cut(s)	191, 846
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	33, 244, 860
LmnI	GCTCC	1 cut(s)	931
Lsp1109I	GCAGC	3 cut(s)	899, 955, 1110
LweI	GCATC	4 cut(s)	46, 262, 458, 1022
MaeI	CTAG	1 cut(s)	813
MaeII	ACGT	2 cut(s)	375, 579
MaeIII	GTNAC	2 cut(s)	472, 511
MalI	GATC	3 cut(s)	35, 246, 862
MboI	GATC	3 cut(s)	33, 244, 860
MboII	GAAGA	7 cut(s)	198, 391, 448, 607, 690, 773, 822
MflI	RGATCY	1 cut(s)	860
MhlI	GDGCHC	2 cut(s)	14, 163
MluCI	AATT	7 cut(s)	100, 129, 463, 491, 504, 1057, 1123
MlyI	GAGTC	5 cut(s)	29, 62, 169, 203, 907
MmeI	TCCRAC	2 cut(s)	535, 932
MnlI	CCTC	7 cut(s)	34, 80, 144, 494, 543, 945, 1138
MroI	TCCGGA	1 cut(s)	209
MroXI	GAANNNNTTC	2 cut(s)	284, 1123
MseI	TTAA	1 cut(s)	957
MspI	CCGG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	352
MwoI	GCNNNNNNNGC	4 cut(s)	743, 752, 1010, 1019
NcoI	CCATGG	1 cut(s)	569
NdeII	GATC	3 cut(s)	33, 244, 860
NlaIII	CATG	4 cut(s)	270, 347, 573, 647
NlaIV	GGNNCC	6 cut(s)	189, 547, 559, 844, 862, 933
NspI	RCATGY	1 cut(s)	270
NspV	TTCGAA	1 cut(s)	710
PagI	TCATGA	1 cut(s)	643
PciI	ACATGT	1 cut(s)	266
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	2 cut(s)	284, 1123
PfeI	GAWTC	2 cut(s)	439, 1109
PkrI	GCNGC	3 cut(s)	889, 970, 1100
PleI	GAGTC	5 cut(s)	28, 62, 169, 202, 907
PpsI	GAGTC	5 cut(s)	28, 62, 169, 202, 907
PscI	ACATGT	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	14
PspN4I	GGNNCC	6 cut(s)	189, 547, 559, 844, 862, 933
PspPI	GGNCC	2 cut(s)	105, 546
PstI	CTGCAG	1 cut(s)	1093
PsuI	RGATCY	1 cut(s)	860
RsaI	GTAC	5 cut(s)	189, 284, 360, 720, 844
RsaNI	GTAC	5 cut(s)	188, 283, 359, 719, 843
SacI	GAGCTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	957
SatI	GCNGC	3 cut(s)	888, 969, 1099
Sau3AI	GATC	3 cut(s)	33, 244, 860
Sau96I	GGNCC	2 cut(s)	105, 546
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	5 cut(s)	29, 62, 169, 203, 907
SduI	GDGCHC	2 cut(s)	14, 163
SfaNI	GCATC	4 cut(s)	46, 262, 458, 1022
SfcI	CTRYAG	1 cut(s)	1089
SfuI	TTCGAA	1 cut(s)	710
SinI	GGWCC	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	162, 1075
SmoI	CTYRAG	2 cut(s)	162, 1075
Sse9I	AATT	7 cut(s)	100, 129, 463, 491, 504, 1057, 1123
SspMI	CTAG	1 cut(s)	813
SstI	GAGCTC	1 cut(s)	14
StyI	CCWWGG	2 cut(s)	569, 1017
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	2 cut(s)	378, 582
TaqI	TCGA	3 cut(s)	14, 710, 1024
TasI	AATT	7 cut(s)	100, 129, 463, 491, 504, 1057, 1123
TatI	WGTACW	2 cut(s)	282, 358
TfiI	GAWTC	2 cut(s)	439, 1109
Tru1I	TTAA	1 cut(s)	957
Tru9I	TTAA	1 cut(s)	957
TscAI	CASTG	3 cut(s)	568, 780, 877
TseI	GCWGC	3 cut(s)	887, 968, 1098
TspDTI	ATGAA	3 cut(s)	891, 974, 1136
TspRI	CASTG	3 cut(s)	568, 780, 877
VpaK11BI	GGWCC	1 cut(s)	546
XapI	RAATTY	4 cut(s)	463, 504, 1057, 1123
XceI	RCATGY	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmnI	GAANNNNTTC	2 cut(s)	284, 1123
XspI	CTAG	1 cut(s)	813
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.