MD06G1228900.v1.1

TIFY 6B-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
35860218 .. 35864674
4457 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1228900.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGGAGAGGGATTTTCTGGGTCTGAGCTCAAACAGTGGTGGTGCGACTCTGAAGGAAGAACCCAATAAAGAAACCAAGAATTCAGCGGAGCCAAGAAGTTCAGGGATGCTGTGGTCGTTTTCAAACAAGGTTTCTGCACCTCCGCAATTCCTGTCTTTCAAGGCTCCTCAGGAAGATGGGCCAAGAAAAACTGCTCATGATAATTCATCTGTATTTATGACTATATCAACTGCTGATGCTTTTCACTCCAGCCAGAAGTCGTTCTCTGGTGGGATTCAGAAAAATTTCGTTTTTGATAAGCAAGCTGGAAACCACTGTGCAACGACAGTATATCCTATGCCTCAATTTGATGCACGTTCAGTTCATCAATCACAAGATGTAAAGATATACCCAGTAGTTAGCCAACACAACCAAAGGATTCCGATTACTTTGAGTTCTCCAGTTCTCCAGTCCCAAGCTCCTGTTGGGCATACCGGTTCTACCATAAAACTGCAACCACTTGGAGGAGTTCCGGTTCTGGCCCCTGTATCTGCTCTTCCTTCTACAACCTCCGTAGTTGGTACCACTGATCTCAGGAATGCATCCAATTCTTCTGGGGCACCTGCTCAGTTAACCATCTTTTATGCTGGTTCTGTGAACGTTTATAATGATATATCTTCAGAGAAGGCCCAGGCTATTATGTTGCTGGCTGGAAATGGATCATCTCCAACTCATTGTAAGGCAACATCCGTAACTCAAGTGCATGCACCAATACCTAGGCCTTCACTAGGAGGCGACTGTTTTTTCAGGAACCAGTCCCATATTACATCTTCAGTCTCTGCACTTCCAAGTCCTCTTTCTGAAACTTCATACGCGAGTTCTAACTCTGGAGGAGCATTTAATAGCACCAATGAAATAGCTATAGTGAAACCAGTAGGAACTTCAGCATCTCCTGTTGACCGCTCAGAGCCTTCTACAGTAGTCAGTTCAGTGGGATCGCCTGTGACGAATCTGATTCCTGCAGTACCTGTGCCTCAATCACGTAAAGCATCCTTGGCCCGGTTTTTTGAGAAGCGCAAGGAGAGGATGATGAGCACGGTGCCATACAGTGTCAGTAAAAAATCTCCAGACTGCAGCACTCCCGGATCGGAAGGTGTGAGTTTCTCGCTCAACTCTTCGAGTTCTTGTCCTCCCCAGTCTATAAATTAG

Protein Analysis

396

Amino Acids

41.52

Weight (kDa)

9.15

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 199 - 231 1.5e-16 tify domain
Jas_motif PF09425 338 - 363 1.5e-10 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 645
AarI CACCTGC 1 cut(s) 610
Acc36I ACCTGC 1 cut(s) 610
Acc65I GGTACC 1 cut(s) 560
AccB1I GGYRCC 3 cut(s) 560, 598, 1078
AccBSI CCGCTC 1 cut(s) 942
AccII CGCG 1 cut(s) 854
AciI CCGC 3 cut(s) 86, 143, 940
AclI AACGTT 1 cut(s) 639
AclWI GGATC 3 cut(s) 706, 982, 1132
AcsI RAATTY 2 cut(s) 79, 283
AcuI CTGAAG 4 cut(s) 71, 642, 795, 906
AfaI GTAC 2 cut(s) 562, 1005
AfiI CCNNNNNNNGG 3 cut(s) 503, 767, 1038
AgeI ACCGGT 1 cut(s) 473
AgsI TTSAA 2 cut(s) 123, 160
AjnI CCWGG 1 cut(s) 669
AjuI GAANNNNNNNTTGG 2 cut(s) 820, 852
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 4 cut(s) 27, 305, 458, 899
AluI AGCT 4 cut(s) 27, 305, 458, 899
Alw21I GWGCWC 2 cut(s) 29, 1076
Alw26I GTCTC 1 cut(s) 820
AlwI GGATC 3 cut(s) 706, 982, 1132
AlwNI CAGNNNCTG 2 cut(s) 818, 1007
AoxI GGCC 5 cut(s) 179, 519, 666, 758, 1035
ApeKI GCWGC 1 cut(s) 1113
ApoI RAATTY 2 cut(s) 79, 283
AsiGI ACCGGT 1 cut(s) 473
Asp700I GAANNNNTTC 2 cut(s) 260, 284
Asp718I GGTACC 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 755
AspLEI GCGC 1 cut(s) 1056
AspS9I GGNCC 4 cut(s) 179, 520, 667, 1036
AsuC2I CCSGG 2 cut(s) 1039, 1122
AvrII CCTAGG 1 cut(s) 755
AxyI CCTNAGG 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 601
BanI GGYRCC 3 cut(s) 560, 598, 1078
BanII GRGCYC 1 cut(s) 29
BarI GAAGNNNNNNTAC 2 cut(s) 519, 551
Bbv12I GWGCWC 2 cut(s) 29, 1076
BbvI GCAGC 1 cut(s) 1125
BccI CCATC 2 cut(s) 170, 623
BciT130I CCWGG 1 cut(s) 671
BcnI CCSGG 2 cut(s) 1039, 1122
BcoDI GTCTC 1 cut(s) 820
BfaI CTAG 2 cut(s) 756, 767
BfmI CTRYAG 4 cut(s) 900, 954, 999, 1111
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 1 cut(s) 1114
BlnI CCTAGG 1 cut(s) 755
BlsI GCNGC 1 cut(s) 1115
Bme1390I CCNGG 3 cut(s) 671, 1039, 1122
BmgT120I GGNCC 4 cut(s) 179, 520, 667, 1036
BmiI GGNNCC 7 cut(s) 90, 165, 522, 562, 600, 791, 1080
BmrFI CCNGG 3 cut(s) 671, 1039, 1122
BmrI ACTGGG 2 cut(s) 386, 1168
BmsI GCATC 6 cut(s) 96, 226, 340, 590, 935, 1037
BmuI ACTGGG 2 cut(s) 386, 1168
BpmI CTGGAG 5 cut(s) 232, 423, 431, 888, 1089
BpuEI CTTGAG 1 cut(s) 720
BpuMI CCSGG 2 cut(s) 1039, 1122
BsaAI YACGTR 1 cut(s) 1022
BsaJI CCNNGG 3 cut(s) 669, 755, 1032
BsaWI WCCGGW 2 cut(s) 473, 511
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 3 cut(s) 503, 767, 1038
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 6 cut(s) 392, 440, 448, 793, 911, 1174
Bse21I CCTNAGG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 3 cut(s) 669, 755, 1032
BseGI GGATG 5 cut(s) 111, 581, 725, 1028, 1071
BseLI CCNNNNNNNGG 3 cut(s) 503, 767, 1038
BseMII CTCAG 5 cut(s) 14, 182, 586, 620, 957
BseNI ACTGG 6 cut(s) 392, 440, 448, 793, 911, 1174
BseRI GAGGAG 3 cut(s) 156, 519, 885
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 1 cut(s) 1125
BsgI GTGCAG 2 cut(s) 120, 804
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 5 cut(s) 181, 521, 668, 760, 1037
BshNI GGYRCC 3 cut(s) 560, 598, 1078
BshTI ACCGGT 1 cut(s) 473
BsiHKAI GWGCWC 2 cut(s) 29, 1076
BsiSI CCGG 4 cut(s) 474, 512, 1039, 1122
BslFI GGGAC 2 cut(s) 436, 781
BslI CCNNNNNNNGG 3 cut(s) 503, 767, 1038
BsmAI GTCTC 1 cut(s) 820
BsmFI GGGAC 2 cut(s) 436, 781
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 5 cut(s) 181, 521, 668, 760, 1037
Bsp1286I GDGCHC 3 cut(s) 29, 601, 1076
Bsp143I GATC 4 cut(s) 568, 698, 974, 1124
BspACI CCGC 3 cut(s) 86, 143, 940
BspANI GGCC 5 cut(s) 181, 521, 668, 760, 1037
BspCNI CTCAG 5 cut(s) 15, 181, 585, 619, 956
BspFNI CGCG 1 cut(s) 854
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 7 cut(s) 90, 165, 522, 562, 600, 791, 1080
BspMAI CTGCAG 2 cut(s) 1003, 1115
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 3 cut(s) 706, 982, 1132
BspQI GCTCTTC 1 cut(s) 540
BspT107I GGYRCC 3 cut(s) 560, 598, 1078
BsrBI CCGCTC 1 cut(s) 942
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 6 cut(s) 392, 440, 448, 793, 911, 1174
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 3 cut(s) 669, 755, 1032
BssMI GATC 4 cut(s) 568, 698, 974, 1124
BssT1I CCWWGG 2 cut(s) 755, 1032
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 7 cut(s) 35, 317, 328, 779, 958, 1078, 1088
Bst6I CTCTTC 2 cut(s) 540, 1159
BstBAI YACGTR 1 cut(s) 1022
BstC8I GCNNGC 3 cut(s) 303, 687, 744
BstDEI CTNAG 5 cut(s) 23, 168, 572, 606, 943
BstENI CCTNNNNNAGG 1 cut(s) 765
BstF5I GGATG 5 cut(s) 111, 581, 725, 1028, 1071
BstFNI CGCG 1 cut(s) 854
BstHHI GCGC 1 cut(s) 1056
BstKTI GATC 4 cut(s) 571, 701, 977, 1127
BstMAI GTCTC 1 cut(s) 820
BstMBI GATC 4 cut(s) 568, 698, 974, 1124
BstMWI GCNNNNNNNGC 1 cut(s) 1034
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 3 cut(s) 669, 1037, 1120
BstSFI CTRYAG 4 cut(s) 900, 954, 999, 1111
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 1 cut(s) 1125
Bsu36I CCTNAGG 1 cut(s) 168
BsuRI GGCC 5 cut(s) 181, 521, 668, 760, 1037
BtsCI GGATG 5 cut(s) 111, 581, 725, 1028, 1071
BtsIMutI CAGTG 5 cut(s) 40, 313, 564, 975, 1093
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 3 cut(s) 303, 687, 744
CaiI CAGNNNCTG 2 cut(s) 818, 1007
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 1056
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 4 cut(s) 179, 520, 667, 1036
Csp6I GTAC 2 cut(s) 561, 1004
CspAI ACCGGT 1 cut(s) 473
CviAII CATG 2 cut(s) 197, 743
CviQI GTAC 2 cut(s) 561, 1004
DdeI CTNAG 5 cut(s) 23, 168, 572, 606, 943
DpnI GATC 4 cut(s) 570, 700, 976, 1126
DpnII GATC 4 cut(s) 568, 698, 974, 1124
Eam1104I CTCTTC 2 cut(s) 540, 1159
EarI CTCTTC 2 cut(s) 540, 1159
Ecl136II GAGCTC 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 755, 1032
Eco147I AGGCCT 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 29
Eco53kI GAGCTC 1 cut(s) 27
Eco57I CTGAAG 4 cut(s) 71, 642, 795, 906
Eco81I CCTNAGG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 27
EcoNI CCTNNNNNAGG 1 cut(s) 765
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 2 cut(s) 755, 1032
EcoT22I ATGCAT 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 29
ErhI CCWWGG 2 cut(s) 755, 1032
FaeI CATG 2 cut(s) 200, 746
FaqI GGGAC 2 cut(s) 436, 781
FatI CATG 2 cut(s) 196, 742
Fnu4HI GCNGC 1 cut(s) 1114
FokI GGATG 5 cut(s) 118, 568, 712, 1015, 1078
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 1114
FspBI CTAG 2 cut(s) 756, 767
GlaI GCGC 1 cut(s) 1055
GluI GCNGC 1 cut(s) 1114
GsuI CTGGAG 5 cut(s) 232, 423, 431, 888, 1089
HaeIII GGCC 5 cut(s) 181, 521, 668, 760, 1037
HapII CCGG 4 cut(s) 474, 512, 1039, 1122
HhaI GCGC 1 cut(s) 1056
Hin1II CATG 2 cut(s) 200, 746
Hin6I GCGC 1 cut(s) 1054
HinP1I GCGC 1 cut(s) 1054
HincII GTYRAC 2 cut(s) 612, 937
HindII GTYRAC 2 cut(s) 612, 937
HinfI GANTC 5 cut(s) 46, 274, 418, 988, 994
HpaI GTTAAC 1 cut(s) 612
HpaII CCGG 4 cut(s) 474, 512, 1039, 1122
Hpy166II GTNNAC 3 cut(s) 612, 637, 937
Hpy188I TCNGA 9 cut(s) 24, 51, 279, 423, 661, 841, 946, 993, 1129
Hpy188III TCNNGA 6 cut(s) 170, 197, 574, 787, 867, 1106
Hpy8I GTNNAC 3 cut(s) 612, 637, 937
HpyAV CCTTC 6 cut(s) 46, 549, 658, 771, 960, 1124
HpyCH4III ACNGT 7 cut(s) 35, 317, 328, 779, 958, 1078, 1088
HpyCH4IV ACGT 3 cut(s) 355, 639, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 1034
HpyF3I CTNAG 5 cut(s) 23, 168, 572, 606, 943
HpySE526I ACGT 3 cut(s) 355, 639, 1021
Hsp92II CATG 2 cut(s) 200, 746
HspAI GCGC 1 cut(s) 1054
KpnI GGTACC 1 cut(s) 564
KspAI GTTAAC 1 cut(s) 612
Kzo9I GATC 4 cut(s) 568, 698, 974, 1124
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 4 cut(s) 88, 169, 463, 872
Lsp1109I GCAGC 1 cut(s) 1125
LweI GCATC 6 cut(s) 96, 226, 340, 590, 935, 1037
MaeI CTAG 2 cut(s) 756, 767
MaeII ACGT 3 cut(s) 355, 639, 1021
MaeIII GTNAC 2 cut(s) 730, 982
MalI GATC 4 cut(s) 570, 700, 976, 1126
MbiI CCGCTC 1 cut(s) 942
MboI GATC 4 cut(s) 568, 698, 974, 1124
MboII GAAGA 7 cut(s) 68, 185, 527, 582, 648, 801, 1146
MhlI GDGCHC 3 cut(s) 29, 601, 1076
MluCI AATT 7 cut(s) 79, 146, 202, 283, 344, 586, 1183
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 731
Mph1103I ATGCAT 1 cut(s) 583
MroXI GAANNNNTTC 2 cut(s) 260, 284
MseI TTAA 2 cut(s) 611, 879
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 4 cut(s) 474, 512, 1039, 1122
MspR9I CCNGG 3 cut(s) 671, 1039, 1122
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 1 cut(s) 1034
NciI CCSGG 2 cut(s) 1039, 1122
NdeII GATC 4 cut(s) 568, 698, 974, 1124
NlaIII CATG 2 cut(s) 200, 746
NlaIV GGNNCC 7 cut(s) 90, 165, 522, 562, 600, 791, 1080
NmuCI GTSAC 1 cut(s) 982
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 1 cut(s) 746
PaeI GCATGC 1 cut(s) 746
PagI TCATGA 1 cut(s) 196
PaqCI CACCTGC 1 cut(s) 610
PceI AGGCCT 1 cut(s) 760
PciSI GCTCTTC 1 cut(s) 540
PcsI WCGNNNNNNNCGW 1 cut(s) 983
PctI GAATGC 1 cut(s) 583
PdmI GAANNNNTTC 2 cut(s) 260, 284
PfeI GAWTC 4 cut(s) 274, 418, 988, 994
PfoI TCCNGGA 1 cut(s) 1120
PinAI ACCGGT 1 cut(s) 473
PkrI GCNGC 1 cut(s) 1115
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 1022
PsiI TTATAA 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 29
Psp1406I AACGTT 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 7 cut(s) 90, 165, 522, 562, 600, 791, 1080
PspPI GGNCC 4 cut(s) 179, 520, 667, 1036
PstI CTGCAG 2 cut(s) 1003, 1115
PstNI CAGNNNCTG 2 cut(s) 818, 1007
RsaI GTAC 2 cut(s) 562, 1005
RsaNI GTAC 2 cut(s) 561, 1004
SacI GAGCTC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 2 cut(s) 611, 879
SatI GCNGC 1 cut(s) 1114
Sau3AI GATC 4 cut(s) 568, 698, 974, 1124
Sau96I GGNCC 4 cut(s) 179, 520, 667, 1036
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 3 cut(s) 671, 1039, 1122
SduI GDGCHC 3 cut(s) 29, 601, 1076
SfaNI GCATC 6 cut(s) 96, 226, 340, 590, 935, 1037
SfcI CTRYAG 4 cut(s) 900, 954, 999, 1111
SmlI CTYRAG 1 cut(s) 735
SmoI CTYRAG 1 cut(s) 735
SphI GCATGC 1 cut(s) 746
Sse9I AATT 7 cut(s) 79, 146, 202, 283, 344, 586, 1183
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 3 cut(s) 86, 143, 940
SspMI CTAG 2 cut(s) 756, 767
SstI GAGCTC 1 cut(s) 29
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 3 cut(s) 669, 1037, 1120
StyI CCWWGG 2 cut(s) 755, 1032
TaaI ACNGT 7 cut(s) 35, 317, 328, 779, 958, 1078, 1088
TaiI ACGT 3 cut(s) 358, 642, 1024
TaqI TCGA 1 cut(s) 1157
TasI AATT 7 cut(s) 79, 146, 202, 283, 344, 586, 1183
TfiI GAWTC 4 cut(s) 274, 418, 988, 994
Tru1I TTAA 2 cut(s) 611, 879
Tru9I TTAA 2 cut(s) 611, 879
TscAI CASTG 5 cut(s) 40, 320, 571, 975, 1093
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 1 cut(s) 1113
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 4 cut(s) 195, 353, 837, 906
TspGWI ACGGA 2 cut(s) 541, 718
TspRI CASTG 5 cut(s) 40, 320, 571, 975, 1093
XagI CCTNNNNNAGG 1 cut(s) 765
XapI RAATTY 2 cut(s) 79, 283
XceI RCATGY 1 cut(s) 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XmaJI CCTAGG 1 cut(s) 755
XmnI GAANNNNTTC 2 cut(s) 260, 284
XspI CTAG 2 cut(s) 756, 767
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.