AT1G48640

Transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17986303 .. 17989163
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48640.1

Sequence Viewer

Length: 1362 bp
ATGTATATTCAGATGACAGATGGAGTTCCTCCGCCACCAGAGCAAAGTTCGTTAGACCACCGGATTGACGAGCTTGAGAGACAGAAAGAGATCGATGATTGGCTTCCGATAACTTCATCGAGAAACGCGAAATGGTGGTACTCCACGTTTCACAACGTGACTGCCATGGTTGGAGCTGGCGTCCTTGGTCTCCCTTTCTTCATGGCCCAACTCGGATGGGGACCAGGCATAGCAGTCCTGATACTATCATGGATAATAACACTTTACACGTTATGGCAAATGGTGGAGATGCATGAGATGGTTCCCGGAAAACGCTTTGATCGCTATCATGAACTTGGTCAGTTCGCATTTGGCGAACGTCTTGGCCTTTATATTATCGTCCCTCAGCAAATCATTGTTGAAGTTGGAGTATGCATAGTTTATATGGTCACCGGAGGACAGTCGTTGAAGAAGTTTCACGAAATCGCCTGTCAAGATTGCTCACCGATCAGACTTTCTTTCTTCATAATGATATTTGCTTCTTCTCATTTCGTTTTATCTCATCTCCCAAACTTCAACTCCATCTCGGGTGTCTCTCTTGTTGCGGCCGTCATGTCTCTTAGTTATTCGACAATTGCGTGGACAGCAACAGCCGCAAAGGGCGTTCAAGAAGATGTTCAATATGGTTACAAATCAGGCACGACCGCGTCAACAGTCTTAAGCTTCTTTACGGGACTTGGGGGCATTGCGTTTGCATATGCAGGTCACAATGTGGTGCTTGAGATCCAAGCAACGATACCCTCTACACCAAGTAACCCTTCTAAAGGTCCTATGTGGAGAGGAGTGGTGGTGGCTTACGTGGTTGTGGCCTTGTGTTATTTCCCCGTTGCTTTGGTTGGCTATGGAGTTTTCGGAAACGCGGTTTTGGATAACGTGTTGATGTCGCTCGAAACGCCCGTTTGGGCCATTGCAACTGCTAACTTGTTCGTCGTTATGCATGTCATTGGTAGTTACCAGATATTCGCGATGCCGGTTTTCGACATGGTGGAGACATTTCTGGTTAAGAAACTGAATTTCAAACCCTCTACAGTTCTTCGTTTCATTGTACGAAATGTTTATGTTGCTTTAACGATGTTCATTGGGATAATGATACCGTTCTTTGGGGGCCTTCTCGCTTTCTTTGGAGGATTTGCGTTTGCTCCAACATCGTATTTTCTTCCTTGCATAATGTGGCTGCTAATCTATAAACCAAAGAGGTTTAGCCTGTCGTGGTGGACGAATTGGGTATGTATAGTGCTTGGAGTTGTTTTGATGATCTTATCATCAATAGGAGGGTTAAGGCAAATCATTATTCAGTCCAAAGATTACAGTTTCTTCTCTTGA

Protein Analysis

453

Amino Acids

50.45

Weight (kDa)

7.64

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 42 - 437 1.5e-105 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 48 - 195 7.2e-08 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 731
AccII CGCG 4 cut(s) 128, 686, 899, 1004
AciI CCGC 5 cut(s) 32, 584, 633, 684, 899
AclWI GGATC 1 cut(s) 757
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 1 cut(s) 1051
AcyI GRCGYC 1 cut(s) 180
AdeI CACNNNGTG 2 cut(s) 157, 751
AfaI GTAC 2 cut(s) 140, 1086
AfiI CCNNNNNNNGG 2 cut(s) 803, 1139
AflII CTTAAG 1 cut(s) 697
AflIII ACRYGT 2 cut(s) 267, 912
AgsI TTSAA 6 cut(s) 401, 448, 556, 647, 659, 1057
AjnI CCWGG 1 cut(s) 223
AjuI GAANNNNNNNTTGG 2 cut(s) 781, 813
AluBI AGCT 3 cut(s) 73, 176, 702
AluI AGCT 3 cut(s) 73, 176, 702
Alw26I GTCTC 5 cut(s) 73, 194, 577, 600, 1022
AlwI GGATC 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 6 cut(s) 204, 364, 585, 846, 942, 1144
ApeKI GCWGC 1 cut(s) 1213
ApoI RAATTY 1 cut(s) 1051
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 5 cut(s) 205, 221, 806, 942, 1144
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 421, 474
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 2 cut(s) 221, 806
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 1200
BccI CCATC 4 cut(s) 14, 210, 292, 569
BceAI ACGGC 1 cut(s) 572
BciT130I CCWGG 1 cut(s) 225
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 5 cut(s) 73, 194, 577, 600, 1022
BfmI CTRYAG 1 cut(s) 1065
BfrI CTTAAG 1 cut(s) 697
BfuAI ACCTGC 1 cut(s) 731
BisI GCNGC 3 cut(s) 585, 633, 1214
BlsI GCNGC 3 cut(s) 586, 634, 1215
Bme1390I CCNGG 2 cut(s) 225, 306
Bme18I GGWCC 2 cut(s) 221, 806
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 5 cut(s) 205, 221, 806, 942, 1144
BmiI GGNNCC 3 cut(s) 222, 303, 1145
BmrFI CCNGG 2 cut(s) 225, 306
BmsI GCATC 2 cut(s) 279, 996
Bpu10I CCTNAGC 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 95, 779
BpuMI CCSGG 1 cut(s) 306
Bsa29I ATCGAT 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 838
BsaBI GATNNNNATC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 165, 184
BsaWI WCCGGW 2 cut(s) 60, 431
BsaXI ACNNNNNCTCC 6 cut(s) 165, 195, 542, 572, 813, 843
Bsc4I CCNNNNNNNGG 2 cut(s) 803, 1139
Bse118I RCCGGY 1 cut(s) 1009
Bse3DI GCAATG 2 cut(s) 723, 945
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 165, 184
BseGI GGATG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 803, 1139
BseMI GCAATG 2 cut(s) 723, 945
BseMII CTCAG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 834
BseX3I CGGCCG 1 cut(s) 585
BseXI GCAGC 1 cut(s) 1200
Bsh1236I CGCG 4 cut(s) 128, 686, 899, 1004
Bsh1285I CGRYCG 2 cut(s) 588, 684
BshFI GGCC 6 cut(s) 206, 366, 587, 848, 944, 1146
BshVI ATCGAT 1 cut(s) 93
BsiEI CGRYCG 2 cut(s) 588, 684
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 4 cut(s) 61, 306, 432, 1010
BslFI GGGAC 3 cut(s) 234, 365, 726
BslI CCNNNNNNNGG 2 cut(s) 803, 1139
BsmAI GTCTC 5 cut(s) 73, 194, 577, 600, 1022
BsmFI GGGAC 3 cut(s) 234, 365, 726
BsnI GGCC 6 cut(s) 206, 366, 587, 848, 944, 1146
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 565
Bsp143I GATC 5 cut(s) 90, 319, 486, 762, 1293
Bsp19I CCATGG 1 cut(s) 165
Bsp68I TCGCGA 1 cut(s) 1004
BspACI CCGC 5 cut(s) 32, 584, 633, 684, 899
BspANI GGCC 6 cut(s) 206, 366, 587, 848, 944, 1146
BspCNI CTCAG 1 cut(s) 397
BspDI ATCGAT 1 cut(s) 93
BspFNI CGCG 4 cut(s) 128, 686, 899, 1004
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 3 cut(s) 222, 303, 1145
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 1 cut(s) 757
BspTI CTTAAG 1 cut(s) 697
BspTNI GGTCTC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 723, 945
BsrFI RCCGGY 1 cut(s) 1009
BssAI RCCGGY 1 cut(s) 1009
BssECI CCNNGG 2 cut(s) 165, 184
BssMI GATC 5 cut(s) 90, 319, 486, 762, 1293
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 165, 184
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 5 cut(s) 441, 694, 1069, 1134, 1349
BstACI GRCGYC 1 cut(s) 180
BstAFI CTTAAG 1 cut(s) 697
BstBAI YACGTR 1 cut(s) 838
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 384, 599
BstDSI CCRYGG 1 cut(s) 165
BstEII GGTNACC 1 cut(s) 427
BstENI CCTNNNNNAGG 1 cut(s) 801
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 4 cut(s) 128, 686, 899, 1004
BstKTI GATC 5 cut(s) 93, 322, 489, 765, 1296
BstMAI GTCTC 5 cut(s) 73, 194, 577, 600, 1022
BstMBI GATC 5 cut(s) 90, 319, 486, 762, 1293
BstMCI CGRYCG 2 cut(s) 588, 684
BstMWI GCNNNNNNNGC 5 cut(s) 40, 321, 623, 632, 931
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 980
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 223, 304
BstSFI CTRYAG 1 cut(s) 1065
BstUI CGCG 4 cut(s) 128, 686, 899, 1004
BstV1I GCAGC 1 cut(s) 1200
BstX2I RGATCY 1 cut(s) 762
BstYI RGATCY 1 cut(s) 762
BstZI CGGCCG 1 cut(s) 585
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 6 cut(s) 206, 366, 587, 848, 944, 1146
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 1019
BtsCI GGATG 1 cut(s) 221
BtuMI TCGCGA 1 cut(s) 1004
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 1 cut(s) 178
CciI TCATGA 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 1009
Cfr13I GGNCC 5 cut(s) 205, 221, 806, 942, 1144
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 2 cut(s) 169, 675
Csp6I GTAC 2 cut(s) 139, 1085
CviAII CATG 8 cut(s) 166, 202, 249, 293, 329, 592, 977, 1021
CviQI GTAC 2 cut(s) 139, 1085
DdeI CTNAG 2 cut(s) 384, 599
DpnI GATC 5 cut(s) 92, 321, 488, 764, 1295
DpnII GATC 5 cut(s) 90, 319, 486, 762, 1293
DraIII CACNNNGTG 2 cut(s) 157, 751
EaeI YGGCCR 1 cut(s) 585
EagI CGGCCG 1 cut(s) 585
EciI GGCGGA 1 cut(s) 21
EclXI CGGCCG 1 cut(s) 585
Eco130I CCWWGG 2 cut(s) 165, 184
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 221, 806
Eco52I CGGCCG 1 cut(s) 585
Eco88I CYCGRG 1 cut(s) 565
Eco91I GGTNACC 1 cut(s) 427
EcoNI CCTNNNNNAGG 1 cut(s) 801
EcoO109I RGGNCCY 2 cut(s) 806, 1144
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 165, 184
EcoT22I ATGCAT 3 cut(s) 294, 416, 978
ErhI CCWWGG 2 cut(s) 165, 184
FaeI CATG 8 cut(s) 169, 205, 252, 296, 332, 595, 980, 1024
FalI AAGNNNNNCTT 2 cut(s) 781, 813
FaqI GGGAC 3 cut(s) 234, 365, 726
FatI CATG 8 cut(s) 165, 201, 248, 292, 328, 591, 976, 1020
FauNDI CATATG 1 cut(s) 736
Fnu4HI GCNGC 3 cut(s) 585, 633, 1214
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 3 cut(s) 585, 633, 1214
GluI GCNGC 3 cut(s) 585, 633, 1214
HaeIII GGCC 6 cut(s) 206, 366, 587, 848, 944, 1146
HapII CCGG 4 cut(s) 61, 306, 432, 1010
HgaI GACGC 2 cut(s) 169, 675
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 8 cut(s) 169, 205, 252, 296, 332, 595, 980, 1024
HincII GTYRAC 1 cut(s) 690
HindII GTYRAC 1 cut(s) 690
HindIII AAGCTT 1 cut(s) 700
HpaII CCGG 4 cut(s) 61, 306, 432, 1010
HphI GGTGA 2 cut(s) 421, 474
Hpy166II GTNNAC 3 cut(s) 621, 690, 1254
Hpy188I TCNGA 5 cut(s) 12, 108, 215, 491, 893
Hpy188III TCNNGA 8 cut(s) 120, 238, 329, 458, 473, 647, 1003, 1359
Hpy8I GTNNAC 3 cut(s) 621, 690, 1254
Hpy99I CGWCG 1 cut(s) 971
HpyAV CCTTC 2 cut(s) 807, 1157
HpyCH4III ACNGT 5 cut(s) 441, 694, 1069, 1134, 1349
HpyCH4IV ACGT 6 cut(s) 146, 156, 269, 358, 837, 912
HpyCH4V TGCA 7 cut(s) 292, 414, 734, 740, 950, 976, 1203
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 321, 623, 632, 931
HpyF3I CTNAG 2 cut(s) 384, 599
HpySE526I ACGT 6 cut(s) 146, 156, 269, 358, 837, 912
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 8 cut(s) 169, 205, 252, 296, 332, 595, 980, 1024
Kzo9I GATC 5 cut(s) 90, 319, 486, 762, 1293
LmnI GCTCC 2 cut(s) 173, 1183
Lsp1109I GCAGC 1 cut(s) 1200
LweI GCATC 2 cut(s) 279, 996
MaeII ACGT 6 cut(s) 146, 156, 269, 358, 837, 912
MaeIII GTNAC 6 cut(s) 157, 427, 665, 743, 791, 989
MalI GATC 5 cut(s) 92, 321, 488, 764, 1295
MboI GATC 5 cut(s) 90, 319, 486, 762, 1293
MboII GAAGA 8 cut(s) 190, 460, 493, 513, 662, 1064, 1187, 1345
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 762
MluCI AATT 3 cut(s) 612, 1051, 1258
MmeI TCCRAC 3 cut(s) 151, 385, 1205
MnlI CCTC 9 cut(s) 39, 393, 428, 790, 812, 1072, 1157, 1227, 1304
Mph1103I ATGCAT 3 cut(s) 294, 416, 978
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 4 cut(s) 698, 1041, 1106, 1316
MspCI CTTAAG 1 cut(s) 697
MspI CCGG 4 cut(s) 61, 306, 432, 1010
MspR9I CCNGG 2 cut(s) 225, 306
MunI CAATTG 1 cut(s) 612
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 4 cut(s) 128, 686, 899, 1004
MwoI GCNNNNNNNGC 5 cut(s) 40, 321, 623, 632, 931
NciI CCSGG 1 cut(s) 306
NcoI CCATGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 736
NdeII GATC 5 cut(s) 90, 319, 486, 762, 1293
NlaIII CATG 8 cut(s) 169, 205, 252, 296, 332, 595, 980, 1024
NlaIV GGNNCC 3 cut(s) 222, 303, 1145
NmuCI GTSAC 3 cut(s) 157, 427, 743
NruI TCGCGA 1 cut(s) 1004
NsiI ATGCAT 3 cut(s) 294, 416, 978
NspI RCATGY 1 cut(s) 980
PagI TCATGA 1 cut(s) 328
PcsI WCGNNNNNNNCGW 5 cut(s) 125, 351, 614, 933, 1253
PdmI GAANNNNTTC 1 cut(s) 654
PflFI GACNNNGTC 1 cut(s) 685
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 3 cut(s) 586, 634, 1215
Ppu21I YACGTR 1 cut(s) 838
PpuMI RGGWCCY 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 1 cut(s) 223
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 222, 303, 1145
PspPI GGNCC 5 cut(s) 205, 221, 806, 942, 1144
PspPPI RGGWCCY 1 cut(s) 806
PsuI RGATCY 1 cut(s) 762
PsyI GACNNNGTC 1 cut(s) 685
RruI TCGCGA 1 cut(s) 1004
RsaI GTAC 2 cut(s) 140, 1086
RsaNI GTAC 2 cut(s) 139, 1085
SaqAI TTAA 4 cut(s) 698, 1041, 1106, 1316
SatI GCNGC 3 cut(s) 585, 633, 1214
Sau3AI GATC 5 cut(s) 90, 319, 486, 762, 1293
Sau96I GGNCC 5 cut(s) 205, 221, 806, 942, 1144
ScrFI CCNGG 2 cut(s) 225, 306
SfaNI GCATC 2 cut(s) 279, 996
SfcI CTRYAG 1 cut(s) 1065
SinI GGWCC 2 cut(s) 221, 806
SmlI CTYRAG 3 cut(s) 74, 697, 758
SmoI CTYRAG 3 cut(s) 74, 697, 758
Sse9I AATT 3 cut(s) 612, 1051, 1258
SsiI CCGC 5 cut(s) 32, 584, 633, 684, 899
StyD4I CCNGG 2 cut(s) 223, 304
StyI CCWWGG 2 cut(s) 165, 184
TaaI ACNGT 5 cut(s) 441, 694, 1069, 1134, 1349
TaiI ACGT 6 cut(s) 149, 159, 272, 361, 840, 915
TaqI TCGA 5 cut(s) 93, 119, 608, 927, 1017
TasI AATT 3 cut(s) 612, 1051, 1258
TauI GCSGC 2 cut(s) 587, 635
Tru1I TTAA 4 cut(s) 698, 1041, 1106, 1316
Tru9I TTAA 4 cut(s) 698, 1041, 1106, 1316
TseFI GTSAC 3 cut(s) 157, 427, 743
TseI GCWGC 1 cut(s) 1213
Tsp45I GTSAC 3 cut(s) 157, 427, 743
TspDTI ATGAA 6 cut(s) 105, 190, 345, 493, 1069, 1105
Tth111I GACNNNGTC 1 cut(s) 685
Vha464I CTTAAG 1 cut(s) 697
VpaK11BI GGWCC 2 cut(s) 221, 806
XagI CCTNNNNNAGG 1 cut(s) 801
XapI RAATTY 1 cut(s) 1051
XceI RCATGY 1 cut(s) 980
XmnI GAANNNNTTC 1 cut(s) 654
Zsp2I ATGCAT 3 cut(s) 294, 416, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.