RchiOBHm_Chr2g0174481

Lysine histidine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003493
Physical Location & Seq
Forward (+)
87056825 .. 87058539
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54163

Sequence Viewer

Length: 1164 bp
ATGGATGAAAAATTAGCCAAGGAAAACGCAATTAATGAGTGGCTTCCAATTACTTTTTCGAGGGATGCAAAATGGTGGTATTCGGCTTTTCACAATGTTACGGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCAGAGCTTGGATCTATTTTGGTCCTTTCATGGGTCATCACATTACACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCATGAATTGGGTCAGCATGCATTTGGTGAAAAGCTTGGTCTTTACATCGTGGTGCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAAAATCGCTGCAGAAGGTCCATGACACTGTGTGCTCAGACTGCAAAAAGATCAAATTGACTTACTTCATCATGATCTTTGCCTCTGTTCACTTTGTGCTTTCCCACCTTCCCAACTTCAACTCCATCTCCGGCGTGTCTTTGGCCGCAGCTGTCATGTCCTTGAGTTACACTACCATAGCATGGACTGCTGCGGTAGACAAGGGTGTGGAATTTTTTTTCAACTTCTTAGCTGCATTGGGTGAAGTGGCCTTTGCGTATGCTAACCATAACGTAGTCCTCGAAATCCAAGCTACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCTATGTGGAAAGGAGTCATTGTTGCCTACATAATTGTGGCTTTGTGCTACTTCCCAGTTGCTCTAGTAGGATATTACATATATGGAAATTCAAATGATGACAACATCCTCGTCTCATTGGAAAGACCCAAATGGCTAATTGTAATGGCCAACATGTTTGTTGTCGTCCCTGTTATTGGAAACTATCAGACATTTAGTCTGACACTACTAGCTCTGCTGCAAATTTATGCAATGCCAGTGTTTGACATGATGGAAACTCTACTGGTAAAAAAGTGGGATTTCAGGCCAAGTTTTATGCTTCGCTTCATTACACGAGCTTCATATGTTGCAATTACCATGTTTGTCGGAATCACATTCCCTTTCTTCAGTGGTCTCCTTGGATTTTTCGGAGGATTTGCTTATTCCCCAACAACATATTTTGTAAGCTCACAATCTGTTCCATTAAATTCTAATGAAATAAAATTGATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

387

Amino Acids

43.44

Weight (kDa)

6.75

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 23 - 370 1.2e-74 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 688
AccB1I GGYRCC 2 cut(s) 304, 688
AccB7I CCANNNNNTGG 2 cut(s) 259, 543
AccI GTMKAC 1 cut(s) 558
AciI CCGC 2 cut(s) 507, 554
AclI AACGTT 1 cut(s) 238
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 3 cut(s) 102, 504, 837
AcsI RAATTY 4 cut(s) 572, 778, 912, 1135
AcuI CTGAAG 1 cut(s) 1039
AdeI CACNNNGTG 2 cut(s) 393, 457
AfaI GTAC 2 cut(s) 347, 690
AfiI CCNNNNNNNGG 4 cut(s) 175, 259, 543, 866
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 4 cut(s) 326, 481, 583, 783
AhdI GACNNNNNGTC 1 cut(s) 885
AjnI CCWGG 1 cut(s) 229
AjuI GAANNNNNNNTTGG 4 cut(s) 40, 72, 642, 674
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 9 cut(s) 116, 151, 286, 512, 593, 653, 902, 1007, 1116
AluI AGCT 9 cut(s) 116, 151, 286, 512, 593, 653, 902, 1007, 1116
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 3 cut(s) 134, 808, 1067
AlwI GGATC 1 cut(s) 163
AoxI GGCC 5 cut(s) 102, 504, 609, 837, 974
ApeKI GCWGC 5 cut(s) 370, 509, 551, 593, 907
ApoI RAATTY 4 cut(s) 572, 778, 912, 1135
AseI ATTAAT 1 cut(s) 33
Asp718I GGTACC 1 cut(s) 688
AspS9I GGNCC 2 cut(s) 166, 379
AsuHPI GGTGA 3 cut(s) 290, 346, 614
AvaII GGWCC 2 cut(s) 166, 379
BaeI ACNNNNGTAYC 2 cut(s) 680, 713
BalI TGGCCA 1 cut(s) 839
BanI GGYRCC 2 cut(s) 304, 688
BauI CACGAG 1 cut(s) 1002
Bbv12I GWGCWC 1 cut(s) 398
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 5 cut(s) 357, 521, 538, 580, 894
BccI CCATC 3 cut(s) 217, 494, 934
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 134, 808, 1067
BfaI CTAG 2 cut(s) 755, 899
BfmI CTRYAG 1 cut(s) 371
BisI GCNGC 6 cut(s) 371, 507, 510, 552, 594, 908
BlsI GCNGC 6 cut(s) 372, 508, 511, 553, 595, 909
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 166, 379
BmeRI GACNNNNNGTC 1 cut(s) 885
BmgT120I GGNCC 2 cut(s) 166, 379
BmiI GGNNCC 3 cut(s) 228, 306, 690
BmrFI CCNGG 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 2 cut(s) 55, 204
BmuI ACTGGG 1 cut(s) 740
Bpu10I CCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 544
BsaI GGTCTC 2 cut(s) 134, 1067
BsaJI CCNNGG 6 cut(s) 18, 105, 141, 230, 684, 1066
BsaWI WCCGGW 1 cut(s) 356
BsaXI ACNNNNNCTCC 8 cut(s) 105, 135, 467, 473, 497, 503, 696, 726
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 259, 543, 866
Bse1I ACTGG 3 cut(s) 746, 926, 957
Bse3DI GCAATG 1 cut(s) 927
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 6 cut(s) 18, 105, 141, 230, 684, 1066
BseGI GGATG 3 cut(s) 10, 70, 795
BseLI CCNNNNNNNGG 4 cut(s) 175, 259, 543, 866
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 3 cut(s) 323, 411, 663
BseNI ACTGG 3 cut(s) 746, 926, 957
BseXI GCAGC 5 cut(s) 357, 521, 538, 580, 894
BshFI GGCC 5 cut(s) 104, 506, 611, 839, 976
BshNI GGYRCC 2 cut(s) 304, 688
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 2 cut(s) 357, 492
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 4 cut(s) 175, 259, 543, 866
BsmAI GTCTC 3 cut(s) 134, 808, 1067
BsmBI CGTCTC 1 cut(s) 808
BsmFI GGGAC 1 cut(s) 842
BsnI GGCC 5 cut(s) 104, 506, 611, 839, 976
Bso31I GGTCTC 2 cut(s) 134, 1067
Bsp1286I GDGCHC 1 cut(s) 398
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 4 cut(s) 155, 244, 411, 435
Bsp19I CCATGG 2 cut(s) 105, 141
BspACI CCGC 2 cut(s) 507, 554
BspANI GGCC 5 cut(s) 104, 506, 611, 839, 976
BspCNI CTCAG 3 cut(s) 322, 410, 664
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 3 cut(s) 228, 306, 690
BspMAI CTGCAG 1 cut(s) 375
BspPI GGATC 1 cut(s) 163
BspT107I GGYRCC 2 cut(s) 304, 688
BspTNI GGTCTC 2 cut(s) 134, 1067
BsrDI GCAATG 1 cut(s) 927
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 3 cut(s) 746, 926, 957
BssECI CCNNGG 6 cut(s) 18, 105, 141, 230, 684, 1066
BssMI GATC 4 cut(s) 155, 244, 411, 435
BssSI CACGAG 1 cut(s) 1002
BssT1I CCWWGG 5 cut(s) 18, 105, 141, 684, 1066
Bst2BI CACGAG 1 cut(s) 1002
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 391
BstAPI GCANNNNNTGC 1 cut(s) 548
BstAUI TGTACA 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 4 cut(s) 309, 397, 589, 672
BstDSI CCRYGG 2 cut(s) 105, 141
BstEII GGTNACC 1 cut(s) 352
BstF5I GGATG 3 cut(s) 10, 70, 795
BstKTI GATC 4 cut(s) 158, 247, 414, 438
BstMAI GTCTC 3 cut(s) 134, 808, 1067
BstMBI GATC 4 cut(s) 155, 244, 411, 435
BstMWI GCNNNNNNNGC 2 cut(s) 402, 548
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 2 cut(s) 272, 847
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 371
BstV1I GCAGC 5 cut(s) 357, 521, 538, 580, 894
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 5 cut(s) 104, 506, 611, 839, 976
BtgI CCRYGG 2 cut(s) 105, 141
BtsCI GGATG 3 cut(s) 10, 70, 795
BtsIMutI CAGTG 3 cut(s) 387, 933, 1063
Cac8I GCNNGC 1 cut(s) 270
CciI TCATGA 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 166, 379
Csp6I GTAC 2 cut(s) 346, 689
CviQI GTAC 2 cut(s) 346, 689
DdeI CTNAG 4 cut(s) 309, 397, 589, 672
DpnI GATC 4 cut(s) 157, 246, 413, 437
DpnII GATC 4 cut(s) 155, 244, 411, 435
DraIII CACNNNGTG 2 cut(s) 393, 457
DriI GACNNNNNGTC 1 cut(s) 885
EaeI YGGCCR 3 cut(s) 102, 504, 837
Eam1105I GACNNNNNGTC 1 cut(s) 885
Eco130I CCWWGG 5 cut(s) 18, 105, 141, 684, 1066
Eco31I GGTCTC 2 cut(s) 134, 1067
Eco47I GGWCC 2 cut(s) 166, 379
Eco57I CTGAAG 1 cut(s) 1039
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 5 cut(s) 18, 105, 141, 684, 1066
EcoT22I ATGCAT 2 cut(s) 219, 274
ErhI CCWWGG 5 cut(s) 18, 105, 141, 684, 1066
Esp3I CGTCTC 1 cut(s) 808
FaqI GGGAC 1 cut(s) 842
FauNDI CATATG 1 cut(s) 1012
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 6 cut(s) 371, 507, 510, 552, 594, 908
FokI GGATG 3 cut(s) 17, 77, 782
Fsp4HI GCNGC 6 cut(s) 371, 507, 510, 552, 594, 908
FspBI CTAG 2 cut(s) 755, 899
GluI GCNGC 6 cut(s) 371, 507, 510, 552, 594, 908
HaeIII GGCC 5 cut(s) 104, 506, 611, 839, 976
HapII CCGG 2 cut(s) 357, 492
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 2 cut(s) 705, 1038
HpaII CCGG 2 cut(s) 357, 492
HphI GGTGA 3 cut(s) 290, 346, 614
Hpy166II GTNNAC 3 cut(s) 346, 451, 559
Hpy188I TCNGA 6 cut(s) 400, 879, 891, 1037, 1079, 1163
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 3 cut(s) 346, 451, 559
HpyAV CCTTC 4 cut(s) 370, 479, 672, 690
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 2 cut(s) 238, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 402, 548
HpyF3I CTNAG 4 cut(s) 309, 397, 589, 672
HpySE526I ACGT 2 cut(s) 238, 633
KpnI GGTACC 1 cut(s) 692
Kzo9I GATC 4 cut(s) 155, 244, 411, 435
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 5 cut(s) 357, 521, 538, 580, 894
LweI GCATC 2 cut(s) 55, 204
MaeI CTAG 2 cut(s) 755, 899
MaeII ACGT 2 cut(s) 238, 633
MaeIII GTNAC 4 cut(s) 97, 248, 352, 527
MalI GATC 4 cut(s) 157, 246, 413, 437
MboI GATC 4 cut(s) 155, 244, 411, 435
MboII GAAGA 1 cut(s) 1045
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 398
MlsI TGGCCA 1 cut(s) 839
MluNI TGGCCA 1 cut(s) 839
MlyI GAGTC 1 cut(s) 714
MmeI TCCRAC 2 cut(s) 91, 1015
MnlI CCTC 7 cut(s) 54, 318, 353, 454, 650, 809, 1073
Mox20I TGGCCA 1 cut(s) 839
Mph1103I ATGCAT 2 cut(s) 219, 274
MscI TGGCCA 1 cut(s) 839
MseI TTAA 2 cut(s) 33, 1133
MslI CAYNNNNRTG 2 cut(s) 302, 725
Msp20I TGGCCA 1 cut(s) 839
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 357, 492
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 402, 548
NcoI CCATGG 2 cut(s) 105, 141
NdeI CATATG 1 cut(s) 1012
NdeII GATC 4 cut(s) 155, 244, 411, 435
NlaIV GGNNCC 3 cut(s) 228, 306, 690
NmuCI GTSAC 1 cut(s) 352
NsiI ATGCAT 2 cut(s) 219, 274
NspI RCATGY 2 cut(s) 272, 847
PaeI GCATGC 1 cut(s) 272
PagI TCATGA 1 cut(s) 432
PciI ACATGT 1 cut(s) 843
PcsI WCGNNNNNNNCGW 2 cut(s) 244, 639
PfeI GAWTC 1 cut(s) 1038
PflMI CCANNNNNTGG 2 cut(s) 259, 543
PkrI GCNGC 6 cut(s) 372, 508, 511, 553, 595, 909
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
PscI ACATGT 1 cut(s) 843
PshBI ATTAAT 1 cut(s) 33
Psp1406I AACGTT 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 229
PspEI GGTNACC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 3 cut(s) 228, 306, 690
PspPI GGNCC 2 cut(s) 166, 379
PstI CTGCAG 1 cut(s) 375
PsuI RGATCY 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 347, 690
RsaNI GTAC 2 cut(s) 346, 689
RseI CAYNNNNRTG 2 cut(s) 302, 725
SaqAI TTAA 2 cut(s) 33, 1133
SatI GCNGC 6 cut(s) 371, 507, 510, 552, 594, 908
Sau3AI GATC 4 cut(s) 155, 244, 411, 435
Sau96I GGNCC 2 cut(s) 166, 379
SchI GAGTC 1 cut(s) 714
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 2 cut(s) 55, 204
SfcI CTRYAG 1 cut(s) 371
SinI GGWCC 2 cut(s) 166, 379
SmiMI CAYNNNNRTG 2 cut(s) 302, 725
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
SphI GCATGC 1 cut(s) 272
SsiI CCGC 2 cut(s) 507, 554
SspMI CTAG 2 cut(s) 755, 899
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 5 cut(s) 18, 105, 141, 684, 1066
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 2 cut(s) 241, 636
TaqI TCGA 2 cut(s) 59, 642
TaqII GACCGA 1 cut(s) 116
TatI WGTACW 1 cut(s) 345
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 1 cut(s) 1038
Tru1I TTAA 2 cut(s) 33, 1133
Tru9I TTAA 2 cut(s) 33, 1133
TscAI CASTG 3 cut(s) 394, 933, 1063
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 5 cut(s) 370, 509, 551, 593, 907
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 7 cut(s) 21, 162, 270, 418, 985, 999, 1158
TspRI CASTG 3 cut(s) 394, 933, 1063
Van91I CCANNNNNTGG 2 cut(s) 259, 543
VpaK11BI GGWCC 2 cut(s) 166, 379
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 4 cut(s) 572, 778, 912, 1135
XceI RCATGY 2 cut(s) 272, 847
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 2 cut(s) 755, 899
Zsp2I ATGCAT 2 cut(s) 219, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.