Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

38806958 .. 38811221

Gene Structure 4264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGGAACTCAAGCTCCGAACGATGTCGATAATACTTACAACCAGACAGAGCTCGACGAGAAGTTAGCCAAGGAAAAGGCAATTAACGATTGGCTTCCGATTACTTCATCAAGGAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTCACGGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCAGAGCTTGGATGGGGTCCTGGTATAACTATTTTGATCCTTTCATGGATCATCACATTGTACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAGTTGGGTCAACATGCATTTGGTGAAAAGCTTGGTCTTTACATAGTGGTGCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAAAATCGCTGCAAAAGGTCCATGACACTGTGTGCTCAGACTGCAAAAATATCAAATTGACTTACTTCATCATGATCTTTGCGTCTGTGCACTTTGTGCTTTCCCACCTTCCCAACTTCAACTCCATCTCCGGCGTGTCTTTGGCCGCAGCTGTCATGTCCTTGAGTTACTCTACCATAGCATGGACTGCTGCACTAGACAAGGGTACGGTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACTGGAAATTTCTTCAACTTCTTAGCTGCATTGGGTGAAGTGGCTTTTGCGTATGCTGGCCATAATGTAGTCCTTGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCCATGTGGAAAGGAGTCATTGTTGCCTACATAATTGTGGCTTTGTGCTACTTCCCAGTTGCTCTGGTGGGATATTACATTTATGGAAATTCAGTTGAGGACAACATCCTCGTCTCATTGGAAAAACCCAAATGGCTTATTGCAACGGCCAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGATTTATGCAATGCCAGTGTTTGACATGATGGAGACTCTACTGGTAAAGAAGTTGGATTTCAGGCCAACTTTTATGCTTCGTTTTGTTACACGAACTTCATATGTTGCAATTACCATGTTTGTTGGAATAACATTCCCATTCTTTAGTGGTCTCCTTGGATTTTTCGGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTGTGTAATGTGGCTTGCCATCTACAAACCAAGGAGGTTCAGCTTATCCTGGTGCTGCAACTATATCTGCATATTCTTTGGTGTTCTTTTGATGGTTCTGTCACCAATTGGAGGGCTGAGATCAATCATAGTTCAAGCCAAGACCTACAAATTCTACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

451

Amino Acids

50.45

Weight (kDa)

8.45

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 434	1.2e-113	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	44 - 175	5.5e-10	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	796
AccB1I	GGYRCC	2 cut(s)	370, 796
AccB7I	CCANNNNNTGG	2 cut(s)	325, 609
AciI	CCGC	1 cut(s)	573
AclI	AACGTT	1 cut(s)	304
AclWI	GGATC	2 cut(s)	226, 251
AcoI	YGGCCR	4 cut(s)	153, 570, 733, 945
AcsI	RAATTY	3 cut(s)	682, 886, 1340
AdeI	CACNNNGTG	2 cut(s)	459, 523
AfaI	GTAC	4 cut(s)	257, 413, 634, 798
AfiI	CCNNNNNNNGG	3 cut(s)	325, 609, 1301
AflIII	ACRYGT	1 cut(s)	951
AgsI	TTSAA	5 cut(s)	392, 547, 691, 752, 1325
AjnI	CCWGG	3 cut(s)	214, 295, 1238
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AloI	GAACNNNNNNTCC	3 cut(s)	30, 156, 188
AluBI	AGCT	9 cut(s)	14, 52, 167, 202, 352, 578, 701, 981, 1233
AluI	AGCT	9 cut(s)	14, 52, 167, 202, 352, 578, 701, 981, 1233
Alw21I	GWGCWC	3 cut(s)	54, 464, 519
Alw26I	GTCTC	4 cut(s)	185, 916, 1013, 1142
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	226, 251
AoxI	GGCC	5 cut(s)	153, 570, 733, 945, 1049
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	5 cut(s)	436, 575, 617, 701, 1245
ApoI	RAATTY	3 cut(s)	682, 886, 1340
Asp718I	GGTACC	1 cut(s)	796
AspS9I	GGNCC	2 cut(s)	212, 445
AsuHPI	GGTGA	4 cut(s)	356, 412, 722, 1284
AvaII	GGWCC	2 cut(s)	212, 445
BaeGI	GKGCMC	1 cut(s)	519
BaeI	ACNNNNGTAYC	2 cut(s)	788, 821
BalI	TGGCCA	1 cut(s)	735
BanI	GGYRCC	2 cut(s)	370, 796
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	320
Bbv12I	GWGCWC	3 cut(s)	54, 464, 519
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	5 cut(s)	423, 587, 604, 688, 1232
BccI	CCATC	6 cut(s)	201, 283, 560, 1009, 1217, 1276
BceAI	ACGGC	2 cut(s)	168, 960
BciT130I	CCWGG	3 cut(s)	216, 297, 1240
BcoDI	GTCTC	4 cut(s)	185, 916, 1013, 1142
BfaI	CTAG	1 cut(s)	623
BisI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1246
BlsI	GCNGC	6 cut(s)	438, 574, 577, 619, 703, 1247
Bme1390I	CCNGG	3 cut(s)	216, 297, 1240
Bme18I	GGWCC	2 cut(s)	212, 445
BmgT120I	GGNCC	2 cut(s)	212, 445
BmiI	GGNNCC	4 cut(s)	213, 294, 372, 798
BmrFI	CCNGG	3 cut(s)	216, 297, 1240
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	848
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	610
BsaI	GGTCTC	2 cut(s)	185, 1142
BsaJI	CCNNGG	7 cut(s)	69, 156, 192, 296, 792, 1141, 1220
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	9 cut(s)	28, 156, 186, 533, 539, 563, 569, 804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 609, 1301
Bse1I	ACTGG	4 cut(s)	682, 854, 1001, 1032
Bse3DI	GCAATG	1 cut(s)	1002
BseBI	CCWGG	3 cut(s)	216, 297, 1240
BseDI	CCNNGG	7 cut(s)	69, 156, 192, 296, 792, 1141, 1220
BseGI	GGATG	3 cut(s)	212, 903, 963
BseLI	CCNNNNNNNGG	3 cut(s)	325, 609, 1301
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	4 cut(s)	389, 477, 771, 1298
BseNI	ACTGG	4 cut(s)	682, 854, 1001, 1032
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	5 cut(s)	423, 587, 604, 688, 1232
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
BshNI	GGYRCC	2 cut(s)	370, 796
BsiHKAI	GWGCWC	3 cut(s)	54, 464, 519
BsiSI	CCGG	2 cut(s)	423, 558
BslI	CCNNNNNNNGG	3 cut(s)	325, 609, 1301
BsmAI	GTCTC	4 cut(s)	185, 916, 1013, 1142
BsmBI	CGTCTC	1 cut(s)	916
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
Bso31I	GGTCTC	2 cut(s)	185, 1142
Bsp1286I	GDGCHC	3 cut(s)	54, 464, 519
Bsp1407I	TGTACA	2 cut(s)	255, 411
Bsp143I	GATC	5 cut(s)	231, 243, 310, 501, 1310
Bsp19I	CCATGG	2 cut(s)	156, 192
BspACI	CCGC	1 cut(s)	573
BspANI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
BspCNI	CTCAG	4 cut(s)	388, 476, 772, 1299
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	213, 294, 372, 798
BspPI	GGATC	2 cut(s)	226, 251
BspT107I	GGYRCC	2 cut(s)	370, 796
BspTNI	GGTCTC	2 cut(s)	185, 1142
BsrDI	GCAATG	1 cut(s)	1002
BsrGI	TGTACA	2 cut(s)	255, 411
BsrI	ACTGG	4 cut(s)	682, 854, 1001, 1032
BssECI	CCNNGG	7 cut(s)	69, 156, 192, 296, 792, 1141, 1220
BssMI	GATC	5 cut(s)	231, 243, 310, 501, 1310
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	6 cut(s)	69, 156, 192, 792, 1141, 1220
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	3 cut(s)	216, 297, 1240
Bst4CI	ACNGT	2 cut(s)	457, 637
BstAPI	GCANNNNNTGC	2 cut(s)	523, 614
BstAUI	TGTACA	2 cut(s)	255, 411
BstC8I	GCNNGC	2 cut(s)	733, 1206
BstDEI	CTNAG	5 cut(s)	375, 463, 697, 780, 1307
BstDSI	CCRYGG	2 cut(s)	156, 192
BstEII	GGTNACC	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	212, 903, 963
BstKTI	GATC	5 cut(s)	234, 246, 313, 504, 1313
BstMAI	GTCTC	4 cut(s)	185, 916, 1013, 1142
BstMBI	GATC	5 cut(s)	231, 243, 310, 501, 1310
BstMWI	GCNNNNNNNGC	3 cut(s)	468, 523, 614
BstNI	CCWGG	3 cut(s)	216, 297, 1240
BstNSI	RCATGY	2 cut(s)	338, 955
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	214, 295, 1238
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	5 cut(s)	423, 587, 604, 688, 1232
BstXI	CCANNNNNNTGG	1 cut(s)	974
BsuRI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
BtgI	CCRYGG	2 cut(s)	156, 192
BtsCI	GGATG	3 cut(s)	212, 903, 963
BtsIMutI	CAGTG	2 cut(s)	453, 1008
Cac8I	GCNNGC	2 cut(s)	733, 1206
CciI	TCATGA	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	212, 445
CseI	GACGC	1 cut(s)	498
Csp6I	GTAC	4 cut(s)	256, 412, 633, 797
CviQI	GTAC	4 cut(s)	256, 412, 633, 797
DdeI	CTNAG	5 cut(s)	375, 463, 697, 780, 1307
DpnI	GATC	5 cut(s)	233, 245, 312, 503, 1312
DpnII	GATC	5 cut(s)	231, 243, 310, 501, 1310
DraIII	CACNNNGTG	2 cut(s)	459, 523
EaeI	YGGCCR	4 cut(s)	153, 570, 733, 945
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	6 cut(s)	69, 156, 192, 792, 1141, 1220
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	185, 1142
Eco47I	GGWCC	2 cut(s)	212, 445
Eco53kI	GAGCTC	1 cut(s)	52
Eco91I	GGTNACC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	418
EcoRII	CCWGG	3 cut(s)	214, 295, 1238
EcoT14I	CCWWGG	6 cut(s)	69, 156, 192, 792, 1141, 1220
EcoT22I	ATGCAT	2 cut(s)	285, 340
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	6 cut(s)	69, 156, 192, 792, 1141, 1220
Esp3I	CGTCTC	1 cut(s)	916
FauNDI	CATATG	1 cut(s)	1087
Fnu4HI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1246
FokI	GGATG	3 cut(s)	219, 890, 950
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1246
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1246
HaeIII	GGCC	5 cut(s)	155, 572, 735, 947, 1051
HapII	CCGG	2 cut(s)	423, 558
HgaI	GACGC	1 cut(s)	498
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	2 cut(s)	813, 1021
HpaII	CCGG	2 cut(s)	423, 558
HphI	GGTGA	4 cut(s)	356, 412, 722, 1284
Hpy166II	GTNNAC	4 cut(s)	258, 332, 412, 517
Hpy188I	TCNGA	5 cut(s)	18, 99, 466, 987, 1154
Hpy188III	TCNNGA	1 cut(s)	499
Hpy8I	GTNNAC	4 cut(s)	258, 332, 412, 517
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	545, 780, 798
HpyCH4III	ACNGT	2 cut(s)	457, 637
HpyCH4IV	ACGT	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	468, 523, 614
HpyF3I	CTNAG	5 cut(s)	375, 463, 697, 780, 1307
HpySE526I	ACGT	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	800
Kzo9I	GATC	5 cut(s)	231, 243, 310, 501, 1310
LmnI	GCTCC	2 cut(s)	19, 164
Lsp1109I	GCAGC	5 cut(s)	423, 587, 604, 688, 1232
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	7 cut(s)	148, 314, 418, 593, 656, 1072, 1290
MalI	GATC	5 cut(s)	233, 245, 312, 503, 1312
MboI	GATC	5 cut(s)	231, 243, 310, 501, 1310
MboII	GAAGA	1 cut(s)	679
MfeI	CAATTG	1 cut(s)	1296
MhlI	GDGCHC	3 cut(s)	54, 464, 519
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	9 cut(s)	81, 482, 682, 765, 831, 886, 1095, 1296, 1340
MluNI	TGGCCA	1 cut(s)	735
MlyI	GAGTC	2 cut(s)	822, 1015
MmeI	TCCRAC	3 cut(s)	142, 1020, 1090
MnlI	CCTC	7 cut(s)	384, 419, 889, 917, 1148, 1218, 1295
Mox20I	TGGCCA	1 cut(s)	735
Mph1103I	ATGCAT	2 cut(s)	285, 340
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	3 cut(s)	155, 368, 833
Msp20I	TGGCCA	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	2 cut(s)	423, 558
MspR9I	CCNGG	3 cut(s)	216, 297, 1240
MunI	CAATTG	1 cut(s)	1296
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	3 cut(s)	216, 297, 1240
MwoI	GCNNNNNNNGC	3 cut(s)	468, 523, 614
NcoI	CCATGG	2 cut(s)	156, 192
NdeI	CATATG	1 cut(s)	1087
NdeII	GATC	5 cut(s)	231, 243, 310, 501, 1310
NlaIV	GGNNCC	4 cut(s)	213, 294, 372, 798
NmuCI	GTSAC	3 cut(s)	148, 418, 1290
NsiI	ATGCAT	2 cut(s)	285, 340
NspI	RCATGY	2 cut(s)	338, 955
PagI	TCATGA	1 cut(s)	498
PciI	ACATGT	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	121
PflMI	CCANNNNNTGG	2 cut(s)	325, 609
PkrI	GCNGC	6 cut(s)	438, 574, 577, 619, 703, 1247
PleI	GAGTC	2 cut(s)	821, 1015
PpsI	GAGTC	2 cut(s)	821, 1015
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	951
Psp124BI	GAGCTC	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	3 cut(s)	214, 295, 1238
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	3 cut(s)	214, 295, 1238
PspN4I	GGNNCC	4 cut(s)	213, 294, 372, 798
PspPI	GGNCC	2 cut(s)	212, 445
PspPPI	RGGWCCY	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	4 cut(s)	257, 413, 634, 798
RsaNI	GTAC	4 cut(s)	256, 412, 633, 797
RseI	CAYNNNNRTG	3 cut(s)	155, 368, 833
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1246
Sau3AI	GATC	5 cut(s)	231, 243, 310, 501, 1310
Sau96I	GGNCC	2 cut(s)	212, 445
SchI	GAGTC	2 cut(s)	822, 1015
ScrFI	CCNGG	3 cut(s)	216, 297, 1240
SduI	GDGCHC	3 cut(s)	54, 464, 519
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	2 cut(s)	212, 445
SmiMI	CAYNNNNRTG	3 cut(s)	155, 368, 833
SmlI	CTYRAG	2 cut(s)	9, 589
SmoI	CTYRAG	2 cut(s)	9, 589
Sse9I	AATT	9 cut(s)	81, 482, 682, 765, 831, 886, 1095, 1296, 1340
SsiI	CCGC	1 cut(s)	573
SspMI	CTAG	1 cut(s)	623
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	3 cut(s)	214, 295, 1238
StyI	CCWWGG	6 cut(s)	69, 156, 192, 792, 1141, 1220
TaaI	ACNGT	2 cut(s)	457, 637
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	27, 54, 648
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	9 cut(s)	81, 482, 682, 765, 831, 886, 1095, 1296, 1340
TatI	WGTACW	2 cut(s)	255, 411
TauI	GCSGC	1 cut(s)	575
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	2 cut(s)	460, 1008
TseFI	GTSAC	3 cut(s)	148, 418, 1290
TseI	GCWGC	5 cut(s)	436, 575, 617, 701, 1245
Tsp45I	GTSAC	3 cut(s)	148, 418, 1290
TspDTI	ATGAA	4 cut(s)	96, 228, 484, 1074
TspRI	CASTG	2 cut(s)	460, 1008
Van91I	CCANNNNNTGG	2 cut(s)	325, 609
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	2 cut(s)	212, 445
XapI	RAATTY	3 cut(s)	682, 886, 1340
XceI	RCATGY	2 cut(s)	338, 955
XspI	CTAG	1 cut(s)	623
Zsp2I	ATGCAT	2 cut(s)	285, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.