Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

26570710 .. 26575228

Gene Structure 4519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G300900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGGAACCCAGGCTCCAACTGACCAGAACAATTATGCCTCCACAGATATTGACGAAAAATTAGCGAAGCAGAAGGCGATAGATGATTGGCTTCCAATTACTTCTTCAAGGAATGCAAAATGGTGGTACTCAGCTTTCCACAACGTCACTGCCATGGTCGGAGCTGGTGTTCTCAGTCTCCCTTATGCCATGTCAGAACTTGGATGGGGTCCTGGTGTGGTGATTTTGGTGCTGTCATGGATCATCACATTGTACACTCTGTGGCAAATGGTGGAGATGCATGAGATGGTTCCTGGGAAGCGGTTTGATAGATACCACGAGTTGGGTCAATATGCCTTTGGTGAAAAGCTTGGTCTTTACATTGTGGTGCCTCAGCAGCTGGTTGTGGAAGTTGGTGTCAACATTGTTTATATGGTCACTGGAGGAAAATCACTGCAGAAGGTCCACAATTCTGTCTGCCCAGAATGTAAAAAGATCAAATTAACTTACTTCATCATGATCTTTGCTTCTGTTCACTTTGTCCTCTCCCACCTCCCCAACTTGAACTCCATTTCTGGTGTATCTTTGGCCGCAGCAGTCATGTCCTTGAGTTACTCTACCATTGCTTGGGCAGCTTCAGTAAACAAGGGTGTGGTAGACAATGTTCAATATGGATATAAAGCCAAGTCTACATCAGGAACTGTGTTCAACTTCTTCAATGCCTTGGGGGAAGTGGCCTTTGCGTATGCCGGGCACAATGTGGTTCTGGAAATACAAGCAACAATTCCATCGACGCCGGAGAAGCCTTCCAAGGGACCCATGTGGAGAGGAGTCGTTGTTGCCTATATAGTTGTGGCTTTGTGCTACTTCCCAGTTGCTCTCATCGGCTATTATATATTTGGCAATTCAGTTGAAGATAATATCCTCATGTCACTGCAGAAACCTGTGTGGCTCATTGCAATGGCCAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGATTTATGCAATGCCAGTGTTTGACATGATAGAAACTGTATTGGTAAAGAAGTTAAATTTCAGACCCACCAGAACGCTTCGCTTCATTACGCGCAATATATATGTCGCATTCACCATGTTCGTTGGTATTACCTTCCCTTTCTTCGGCGGTCTCCTTGGATTTTTCGGAGGATTTGCTTTCGCCCCAACAACATATTTCCTCCCTTGCATAATGTGGCTTGCCATCTACAAACCAAGAAGGTTCAGCTTGTCTTGGTGGTGTAACTATATTTGCATCTTTTTTGGTGTTCTTTTGATGGTCCTTTCACCTATTGGAGGATTGAGAACAATCATAATTGAAGCCAAGACCTACAAATTTTACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

450

Amino Acids

50.33

Weight (kDa)

9.13

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AccB7I	CCANNNNNTGG	2 cut(s)	322, 606
AccI	GTMKAC	2 cut(s)	636, 668
AccII	CGCG	1 cut(s)	1075
AciI	CCGC	3 cut(s)	301, 570, 1131
AclWI	GGATC	1 cut(s)	248
AcoI	YGGCCR	2 cut(s)	567, 942
AcsI	RAATTY	2 cut(s)	1039, 1337
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	773
AdeI	CACNNNGTG	2 cut(s)	261, 739
AfaI	GTAC	2 cut(s)	128, 254
AfiI	CCNNNNNNNGG	5 cut(s)	322, 606, 791, 1127, 1298
AflIII	ACRYGT	1 cut(s)	948
AgsI	TTSAA	7 cut(s)	108, 544, 647, 688, 697, 893, 1322
AjnI	CCWGG	3 cut(s)	9, 211, 292
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AloI	GAACNNNNNNTCC	3 cut(s)	30, 153, 185
AluBI	AGCT	7 cut(s)	134, 164, 349, 379, 614, 978, 1230
AluI	AGCT	7 cut(s)	134, 164, 349, 379, 614, 978, 1230
Alw26I	GTCTC	2 cut(s)	182, 1139
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	2 cut(s)	379, 680
AoxI	GGCC	3 cut(s)	567, 714, 942
ApeKI	GCWGC	3 cut(s)	376, 572, 611
ApoI	RAATTY	2 cut(s)	1039, 1337
AspLEI	GCGC	1 cut(s)	1077
AspS9I	GGNCC	4 cut(s)	209, 442, 794, 1282
AsuC2I	CCSGG	1 cut(s)	730
AsuHPI	GGTGA	4 cut(s)	232, 353, 1087, 1281
AvaII	GGWCC	4 cut(s)	209, 442, 794, 1282
BaeGI	GKGCMC	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	944
BanI	GGYRCC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	388, 584, 623
BccI	CCATC	5 cut(s)	198, 280, 775, 1214, 1273
BciT130I	CCWGG	3 cut(s)	11, 213, 294
BcnI	CCSGG	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	182, 1139
BfmI	CTRYAG	2 cut(s)	434, 914
BisI	GCNGC	4 cut(s)	377, 570, 573, 612
BlsI	GCNGC	4 cut(s)	378, 571, 574, 613
Bme1390I	CCNGG	4 cut(s)	11, 213, 294, 730
Bme18I	GGWCC	4 cut(s)	209, 442, 794, 1282
BmgT120I	GGNCC	4 cut(s)	209, 442, 794, 1282
BmiI	GGNNCC	7 cut(s)	7, 15, 210, 291, 369, 795, 796
BmrFI	CCNGG	4 cut(s)	11, 213, 294, 730
BmrI	ACTGGG	1 cut(s)	845
BmsI	GCATC	2 cut(s)	267, 1266
BmuI	ACTGGG	1 cut(s)	845
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	730
BsaHI	GRCGYC	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	1139
BsaJI	CCNNGG	6 cut(s)	9, 153, 293, 702, 789, 1138
BsaXI	ACNNNNNCTCC	7 cut(s)	28, 153, 183, 530, 560, 801, 831
Bsc4I	CCNNNNNNNGG	5 cut(s)	322, 606, 791, 1127, 1298
Bse1I	ACTGG	3 cut(s)	424, 851, 998
Bse3DI	GCAATG	4 cut(s)	600, 933, 945, 999
BseBI	CCWGG	3 cut(s)	11, 213, 294
BseDI	CCNNGG	6 cut(s)	9, 153, 293, 702, 789, 1138
BseGI	GGATG	2 cut(s)	209, 960
BseLI	CCNNNNNNNGG	5 cut(s)	322, 606, 791, 1127, 1298
BseMI	GCAATG	4 cut(s)	600, 933, 945, 999
BseMII	CTCAG	3 cut(s)	144, 187, 386
BseNI	ACTGG	3 cut(s)	424, 851, 998
BseRI	GAGGAG	1 cut(s)	822
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	3 cut(s)	388, 584, 623
Bsh1236I	CGCG	1 cut(s)	1075
BshFI	GGCC	3 cut(s)	569, 716, 944
BshNI	GGYRCC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	729, 776
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	5 cut(s)	322, 606, 791, 1127, 1298
BsmAI	GTCTC	2 cut(s)	182, 1139
BsmFI	GGGAC	1 cut(s)	807
BsmI	GAATGC	2 cut(s)	118, 1091
BsnI	GGCC	3 cut(s)	569, 716, 944
Bso31I	GGTCTC	1 cut(s)	1139
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	240, 474, 498
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	3 cut(s)	301, 570, 1131
BspANI	GGCC	3 cut(s)	569, 716, 944
BspCNI	CTCAG	3 cut(s)	143, 186, 385
BspFNI	CGCG	1 cut(s)	1075
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	7 cut(s)	7, 15, 210, 291, 369, 795, 796
BspMAI	CTGCAG	2 cut(s)	438, 918
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	1139
BsrDI	GCAATG	4 cut(s)	600, 933, 945, 999
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	3 cut(s)	424, 851, 998
BssECI	CCNNGG	6 cut(s)	9, 153, 293, 702, 789, 1138
BssMI	GATC	3 cut(s)	240, 474, 498
BssNI	GRCGYC	1 cut(s)	773
BssSI	CACGAG	1 cut(s)	317
BssT1I	CCWWGG	4 cut(s)	153, 702, 789, 1138
Bst2BI	CACGAG	1 cut(s)	317
Bst2UI	CCWGG	3 cut(s)	11, 213, 294
Bst4CI	ACNGT	2 cut(s)	682, 1021
BstACI	GRCGYC	1 cut(s)	773
BstAUI	TGTACA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	1203
BstDEI	CTNAG	3 cut(s)	130, 173, 372
BstDSI	CCRYGG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	1296
BstF5I	GGATG	2 cut(s)	209, 960
BstFNI	CGCG	1 cut(s)	1075
BstHHI	GCGC	1 cut(s)	1077
BstKTI	GATC	3 cut(s)	243, 477, 501
BstMAI	GTCTC	2 cut(s)	182, 1139
BstMBI	GATC	3 cut(s)	240, 474, 498
BstMWI	GCNNNNNNNGC	3 cut(s)	376, 611, 781
BstNI	CCWGG	3 cut(s)	11, 213, 294
BstNSI	RCATGY	1 cut(s)	952
BstSCI	CCNGG	4 cut(s)	9, 211, 292, 728
BstSFI	CTRYAG	2 cut(s)	434, 914
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	1 cut(s)	1075
BstV1I	GCAGC	3 cut(s)	388, 584, 623
BstXI	CCANNNNNNTGG	1 cut(s)	971
BsuRI	GGCC	3 cut(s)	569, 716, 944
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	209, 960
BtsI	GCAGTG	3 cut(s)	147, 431, 911
BtsIMutI	CAGTG	5 cut(s)	147, 417, 431, 911, 1005
Cac8I	GCNNGC	1 cut(s)	1203
CaiI	CAGNNNCTG	2 cut(s)	379, 680
CciI	TCATGA	1 cut(s)	495
CfoI	GCGC	1 cut(s)	1077
Cfr13I	GGNCC	4 cut(s)	209, 442, 794, 1282
CseI	GACGC	1 cut(s)	781
Csp6I	GTAC	2 cut(s)	127, 253
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviQI	GTAC	2 cut(s)	127, 253
DdeI	CTNAG	3 cut(s)	130, 173, 372
DpnI	GATC	3 cut(s)	242, 476, 500
DpnII	GATC	3 cut(s)	240, 474, 498
DraIII	CACNNNGTG	2 cut(s)	261, 739
EaeI	YGGCCR	2 cut(s)	567, 942
Eco130I	CCWWGG	4 cut(s)	153, 702, 789, 1138
Eco31I	GGTCTC	1 cut(s)	1139
Eco47I	GGWCC	4 cut(s)	209, 442, 794, 1282
Eco57I	CTGAAG	1 cut(s)	600
EcoNI	CCTNNNNNAGG	1 cut(s)	1296
EcoO109I	RGGNCCY	2 cut(s)	209, 794
EcoRII	CCWGG	3 cut(s)	9, 211, 292
EcoT14I	CCWWGG	4 cut(s)	153, 702, 789, 1138
EcoT22I	ATGCAT	1 cut(s)	282
ErhI	CCWWGG	4 cut(s)	153, 702, 789, 1138
FaqI	GGGAC	1 cut(s)	807
FblI	GTMKAC	2 cut(s)	636, 668
Fnu4HI	GCNGC	4 cut(s)	377, 570, 573, 612
FokI	GGATG	2 cut(s)	216, 947
Fsp4HI	GCNGC	4 cut(s)	377, 570, 573, 612
GlaI	GCGC	1 cut(s)	1076
GluI	GCNGC	4 cut(s)	377, 570, 573, 612
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	3 cut(s)	569, 716, 944
HapII	CCGG	2 cut(s)	729, 776
HgaI	GACGC	1 cut(s)	781
HhaI	GCGC	1 cut(s)	1077
Hin1I	GRCGYC	1 cut(s)	773
Hin6I	GCGC	1 cut(s)	1075
HinP1I	GCGC	1 cut(s)	1075
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	1 cut(s)	810
HpaII	CCGG	2 cut(s)	729, 776
HphI	GGTGA	4 cut(s)	232, 353, 1087, 1281
Hpy166II	GTNNAC	7 cut(s)	255, 400, 445, 514, 622, 637, 669
Hpy188I	TCNGA	5 cut(s)	161, 196, 984, 1046, 1151
Hpy188III	TCNNGA	3 cut(s)	496, 675, 746
Hpy8I	GTNNAC	7 cut(s)	255, 400, 445, 514, 622, 637, 669
Hpy99I	CGWCG	1 cut(s)	775
HpyAV	CCTTC	5 cut(s)	67, 433, 795, 1126, 1215
HpyCH4III	ACNGT	2 cut(s)	682, 1021
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	8 cut(s)	116, 280, 436, 916, 938, 992, 1191, 1257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	376, 611, 781
HpyF3I	CTNAG	3 cut(s)	130, 173, 372
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	773
HspAI	GCGC	1 cut(s)	1075
KflI	GGGWCCC	1 cut(s)	794
Kzo9I	GATC	3 cut(s)	240, 474, 498
LmnI	GCTCC	2 cut(s)	19, 161
Lsp1109I	GCAGC	3 cut(s)	388, 584, 623
LweI	GCATC	2 cut(s)	267, 1266
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	5 cut(s)	145, 415, 590, 909, 1244
MalI	GATC	3 cut(s)	242, 476, 500
MboI	GATC	3 cut(s)	240, 474, 498
MboII	GAAGA	4 cut(s)	96, 685, 905, 1117
MhlI	GDGCHC	1 cut(s)	735
MlsI	TGGCCA	1 cut(s)	944
MluNI	TGGCCA	1 cut(s)	944
MlyI	GAGTC	1 cut(s)	819
MmeI	TCCRAC	2 cut(s)	41, 139
Mox20I	TGGCCA	1 cut(s)	944
Mph1103I	ATGCAT	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	944
MseI	TTAA	2 cut(s)	482, 1037
MslI	CAYNNNNRTG	3 cut(s)	152, 365, 938
Msp20I	TGGCCA	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	2 cut(s)	729, 776
MspR9I	CCNGG	4 cut(s)	11, 213, 294, 730
Mva1269I	GAATGC	2 cut(s)	118, 1091
MvaI	CCWGG	3 cut(s)	11, 213, 294
MvnI	CGCG	1 cut(s)	1075
MwoI	GCNNNNNNNGC	3 cut(s)	376, 611, 781
NciI	CCSGG	1 cut(s)	730
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	240, 474, 498
NlaIV	GGNNCC	7 cut(s)	7, 15, 210, 291, 369, 795, 796
NmuCI	GTSAC	3 cut(s)	145, 415, 909
NsiI	ATGCAT	1 cut(s)	282
NspI	RCATGY	1 cut(s)	952
PagI	TCATGA	1 cut(s)	495
PciI	ACATGT	1 cut(s)	948
PctI	GAATGC	2 cut(s)	118, 1091
PflMI	CCANNNNNTGG	2 cut(s)	322, 606
PkrI	GCNGC	4 cut(s)	378, 571, 574, 613
PleI	GAGTC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	818
PpuMI	RGGWCCY	2 cut(s)	209, 794
PscI	ACATGT	1 cut(s)	948
Psp5II	RGGWCCY	2 cut(s)	209, 794
Psp6I	CCWGG	3 cut(s)	9, 211, 292
PspGI	CCWGG	3 cut(s)	9, 211, 292
PspN4I	GGNNCC	7 cut(s)	7, 15, 210, 291, 369, 795, 796
PspPI	GGNCC	4 cut(s)	209, 442, 794, 1282
PspPPI	RGGWCCY	2 cut(s)	209, 794
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
PstI	CTGCAG	2 cut(s)	438, 918
PstNI	CAGNNNCTG	2 cut(s)	379, 680
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	128, 254
RsaNI	GTAC	2 cut(s)	127, 253
RseI	CAYNNNNRTG	3 cut(s)	152, 365, 938
SaqAI	TTAA	2 cut(s)	482, 1037
SatI	GCNGC	4 cut(s)	377, 570, 573, 612
Sau3AI	GATC	3 cut(s)	240, 474, 498
Sau96I	GGNCC	4 cut(s)	209, 442, 794, 1282
SchI	GAGTC	1 cut(s)	819
ScrFI	CCNGG	4 cut(s)	11, 213, 294, 730
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	2 cut(s)	267, 1266
SfcI	CTRYAG	2 cut(s)	434, 914
SinI	GGWCC	4 cut(s)	209, 442, 794, 1282
SmiMI	CAYNNNNRTG	3 cut(s)	152, 365, 938
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
SsiI	CCGC	3 cut(s)	301, 570, 1131
StyD4I	CCNGG	4 cut(s)	9, 211, 292, 728
StyI	CCWWGG	4 cut(s)	153, 702, 789, 1138
TaaI	ACNGT	2 cut(s)	682, 1021
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	770
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	1 cut(s)	572
Tru1I	TTAA	2 cut(s)	482, 1037
Tru9I	TTAA	2 cut(s)	482, 1037
TscAI	CASTG	5 cut(s)	154, 424, 438, 918, 1005
TseFI	GTSAC	3 cut(s)	145, 415, 909
TseI	GCWGC	3 cut(s)	376, 572, 611
Tsp45I	GTSAC	3 cut(s)	145, 415, 909
TspDTI	ATGAA	2 cut(s)	481, 1057
TspRI	CASTG	5 cut(s)	154, 424, 438, 918, 1005
Van91I	CCANNNNNTGG	2 cut(s)	322, 606
VpaK11BI	GGWCC	4 cut(s)	209, 442, 794, 1282
XagI	CCTNNNNNAGG	1 cut(s)	1296
XapI	RAATTY	2 cut(s)	1039, 1337
XceI	RCATGY	1 cut(s)	952
XmiI	GTMKAC	2 cut(s)	636, 668
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.