pycom17g01370

Lysine histidine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0003493
Physical Location & Seq
Reverse (-)
926443 .. 928305
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01370.1

Sequence Viewer

Length: 1083 bp
ATGGTTGAAATGCATGAGATGGTTCCAGGCAAACGGTTTGATCGATACCACGAGCTGGGGCAGTATGCATTTGGTGAAAAGCTTGGCCTTTACATTGTTGTGCCTCAACAGCTCATCGTCGAGGTCGGTGTCAACATCGTCTACATGGTTACCGGAGGAAAATCGCTACAGAAGGTCCACAATTCTGTGTGCTCAGACTGTAAAAAGATCAAGTTAACCTATTTCATCATGATCTTTGCATCTGTTCACTTTGTCCTCTCCCACCTTCCCAACTTCAACTCCATCTCTGGTGTGTCTTTGGCTGCTGCAGTCATGTCCTTGAGTTACTCTACCATCGCTTGGGGAGCCTCTGTGGACAAGGGTGTGGTAGACAATGTCGCATATGGGTACAAAGCCACGTCTGCATCAGGAACTGTGCTCAATTTCTTCACTTCCTTGGGTCACGTGGCTTTTGCTTATGCTGGTCACAATGTTGTTCTGGAAATCCAAGCAACAATTCCATCTACACCTGAGAAGCCATCCAAGGGACCCATGTGGAGAGGAGTCATCGTCGCCTACATTGTTGTCGCCTTGTGCTACTTCCCGGTTGCTCTGGTCGGATTCTACGTGTTTGGCAATACAGTTGAGGATAACATCCTCATTTCACTTGAAAAACCTGCCTGGCTCATTGCAGTGGCCAACATGTTTGTTGTCATCCATGTCATCGGAAGCTATCAGATTTACGCAATGCCGGTGTTTGACATGATCGAAGCTGTGTTGGTAAAGAAGTTGAATTTCGCACCTACTAGAACGCTTCGCTTCATTTCACGTAATATATATGTCGCATTCACCATGTTCATTGGCATTACCTTCCCTTTCTTCGGTGGTCTCCTTGGATTTTTCGGAGGATTTGCTTTCGCTCCAACAACTTACTTCCTCCCTTGTGTCATGTGGCTTGCCATTTACAAGCCGAGGAAGTTCTGCTTGTCTTGGTGGTGCAACTATACCTGTATCTTTTTGGGTGTTCTTTTGATGGTTCTATCACCTATCGGAGGATTGAGATCGATCATCATGCAAGCCAAGACCTACAAATTTTACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

361

Amino Acids

40.03

Weight (kDa)

9.16

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 2 - 344 5.5e-88 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 664
AccB7I CCANNNNNTGG 2 cut(s) 55, 339
AccI GTMKAC 2 cut(s) 141, 369
AcoI YGGCCR 1 cut(s) 675
AcsI RAATTY 2 cut(s) 772, 1070
AcvI CACGTG 1 cut(s) 445
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 5 cut(s) 55, 339, 524, 860, 1031
AflIII ACRYGT 2 cut(s) 606, 681
AgsI TTSAA 4 cut(s) 8, 277, 650, 772
AjiI CACGTC 1 cut(s) 399
AjnI CCWGG 2 cut(s) 25, 659
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AluBI AGCT 5 cut(s) 55, 82, 112, 711, 752
AluI AGCT 5 cut(s) 55, 82, 112, 711, 752
Alw21I GWGCWC 2 cut(s) 194, 420
Alw26I GTCTC 1 cut(s) 872
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 2 cut(s) 85, 675
ApeKI GCWGC 2 cut(s) 302, 305
ApoI RAATTY 2 cut(s) 772, 1070
AspS9I GGNCC 2 cut(s) 175, 527
AsuC2I CCSGG 1 cut(s) 584
AsuHPI GGTGA 3 cut(s) 86, 820, 1014
AvaII GGWCC 2 cut(s) 175, 527
BalI TGGCCA 1 cut(s) 677
BauI CACGAG 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 445
Bbv12I GWGCWC 2 cut(s) 194, 420
BbvI GCAGC 2 cut(s) 289, 292
BccI CCATC 6 cut(s) 13, 290, 341, 508, 526, 1006
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BciT130I CCWGG 2 cut(s) 27, 661
BcnI CCSGG 1 cut(s) 584
BcoDI GTCTC 1 cut(s) 872
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 2 cut(s) 167, 306
BfuAI ACCTGC 1 cut(s) 664
BisI GCNGC 2 cut(s) 303, 306
BlsI GCNGC 2 cut(s) 304, 307
Bme1390I CCNGG 3 cut(s) 27, 584, 661
Bme18I GGWCC 2 cut(s) 175, 527
BmgBI CACGTC 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 175, 527
BmiI GGNNCC 4 cut(s) 24, 346, 528, 529
BmrFI CCNGG 3 cut(s) 27, 584, 661
BmsI GCATC 2 cut(s) 248, 413
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 584
Bsa29I ATCGAT 2 cut(s) 43, 1043
BsaAI YACGTR 3 cut(s) 445, 607, 809
BsaBI GATNNNNATC 1 cut(s) 1039
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 4 cut(s) 435, 522, 871, 950
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 6 cut(s) 263, 293, 336, 366, 534, 564
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 339, 524, 860, 1031
Bse118I RCCGGY 1 cut(s) 730
Bse3DI GCAATG 2 cut(s) 666, 732
Bse8I GATNNNNATC 1 cut(s) 1039
BseBI CCWGG 2 cut(s) 27, 661
BseCI ATCGAT 2 cut(s) 43, 1043
BseDI CCNNGG 4 cut(s) 435, 522, 871, 950
BseGI GGATG 3 cut(s) 518, 633, 693
BseJI GATNNNNATC 1 cut(s) 1039
BseLI CCNNNNNNNGG 5 cut(s) 55, 339, 524, 860, 1031
BseMI GCAATG 2 cut(s) 666, 732
BseMII CTCAG 2 cut(s) 207, 501
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 2 cut(s) 289, 292
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 87, 677
BshVI ATCGAT 2 cut(s) 43, 1043
BsiHKAI GWGCWC 2 cut(s) 194, 420
BsiSI CCGG 3 cut(s) 153, 584, 731
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 5 cut(s) 55, 339, 524, 860, 1031
BsmAI GTCTC 1 cut(s) 872
BsmFI GGGAC 1 cut(s) 540
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 2 cut(s) 87, 677
Bso31I GGTCTC 1 cut(s) 872
Bsp1286I GDGCHC 2 cut(s) 194, 420
Bsp143I GATC 6 cut(s) 40, 207, 231, 744, 1040, 1044
BspANI GGCC 2 cut(s) 87, 677
BspCNI CTCAG 2 cut(s) 206, 502
BspDI ATCGAT 2 cut(s) 43, 1043
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 24, 346, 528, 529
BspMAI CTGCAG 1 cut(s) 310
BspMI ACCTGC 1 cut(s) 664
BspTNI GGTCTC 1 cut(s) 872
BsrDI GCAATG 2 cut(s) 666, 732
BsrFI RCCGGY 1 cut(s) 730
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 4 cut(s) 435, 522, 871, 950
BssMI GATC 6 cut(s) 40, 207, 231, 744, 1040, 1044
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 3 cut(s) 435, 522, 871
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 27, 661
Bst4CI ACNGT 4 cut(s) 36, 200, 415, 622
BstBAI YACGTR 3 cut(s) 445, 607, 809
BstC8I GCNNGC 2 cut(s) 936, 1056
BstDEI CTNAG 2 cut(s) 193, 510
BstEII GGTNACC 1 cut(s) 148
BstENI CCTNNNNNAGG 1 cut(s) 1029
BstF5I GGATG 3 cut(s) 518, 633, 693
BstKTI GATC 6 cut(s) 43, 210, 234, 747, 1043, 1047
BstMAI GTCTC 1 cut(s) 872
BstMBI GATC 6 cut(s) 40, 207, 231, 744, 1040, 1044
BstMWI GCNNNNNNNGC 3 cut(s) 109, 344, 401
BstNI CCWGG 2 cut(s) 27, 661
BstNSI RCATGY 1 cut(s) 685
BstPI GGTNACC 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 25, 582, 659
BstSFI CTRYAG 2 cut(s) 167, 306
BstV1I GCAGC 2 cut(s) 289, 292
Bsu15I ATCGAT 2 cut(s) 43, 1043
BsuRI GGCC 2 cut(s) 87, 677
BsuTUI ATCGAT 2 cut(s) 43, 1043
BtgZI GCGATG 1 cut(s) 319
BtrI CACGTC 1 cut(s) 399
BtsCI GGATG 3 cut(s) 518, 633, 693
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 1 cut(s) 678
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 2 cut(s) 936, 1056
CaiI CAGNNNCTG 1 cut(s) 413
CciI TCATGA 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 175, 527
ClaI ATCGAT 2 cut(s) 43, 1043
Csp6I GTAC 1 cut(s) 388
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 193, 510
DpnI GATC 6 cut(s) 42, 209, 233, 746, 1042, 1046
DpnII GATC 6 cut(s) 40, 207, 231, 744, 1040, 1044
EaeI YGGCCR 1 cut(s) 675
Eco130I CCWWGG 3 cut(s) 435, 522, 871
Eco31I GGTCTC 1 cut(s) 872
Eco47I GGWCC 2 cut(s) 175, 527
Eco72I CACGTG 1 cut(s) 445
Eco91I GGTNACC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 527
EcoO65I GGTNACC 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 25, 659
EcoT14I CCWWGG 3 cut(s) 435, 522, 871
EcoT22I ATGCAT 2 cut(s) 15, 70
ErhI CCWWGG 3 cut(s) 435, 522, 871
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FaqI GGGAC 1 cut(s) 540
FauNDI CATATG 1 cut(s) 382
FblI GTMKAC 2 cut(s) 141, 369
Fnu4HI GCNGC 2 cut(s) 303, 306
FokI GGATG 3 cut(s) 505, 620, 680
Fsp4HI GCNGC 2 cut(s) 303, 306
FspBI CTAG 1 cut(s) 786
GluI GCNGC 2 cut(s) 303, 306
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 2 cut(s) 87, 677
HapII CCGG 3 cut(s) 153, 584, 731
HincII GTYRAC 2 cut(s) 133, 216
HindII GTYRAC 2 cut(s) 133, 216
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 543, 600
HpaI GTTAAC 1 cut(s) 216
HpaII CCGG 3 cut(s) 153, 584, 731
HphI GGTGA 3 cut(s) 86, 820, 1014
Hpy166II GTNNAC 7 cut(s) 133, 142, 178, 216, 247, 355, 370
Hpy188I TCNGA 6 cut(s) 196, 599, 707, 717, 884, 1031
Hpy188III TCNNGA 3 cut(s) 229, 408, 479
Hpy8I GTNNAC 7 cut(s) 133, 142, 178, 216, 247, 355, 370
Hpy99I CGWCG 2 cut(s) 122, 554
HpyAV CCTTC 3 cut(s) 166, 275, 859
HpyCH4III ACNGT 4 cut(s) 36, 200, 415, 622
HpyCH4IV ACGT 4 cut(s) 398, 444, 606, 808
HpyCH4V TGCA 8 cut(s) 13, 68, 239, 308, 404, 671, 978, 1054
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 344, 401
HpyF3I CTNAG 2 cut(s) 193, 510
HpySE526I ACGT 4 cut(s) 398, 444, 606, 808
KflI GGGWCCC 1 cut(s) 527
KspAI GTTAAC 1 cut(s) 216
Kzo9I GATC 6 cut(s) 40, 207, 231, 744, 1040, 1044
LmnI GCTCC 2 cut(s) 344, 904
Lsp1109I GCAGC 2 cut(s) 289, 292
LweI GCATC 2 cut(s) 248, 413
MaeI CTAG 1 cut(s) 786
MaeII ACGT 4 cut(s) 398, 444, 606, 808
MaeIII GTNAC 4 cut(s) 148, 323, 440, 464
MalI GATC 6 cut(s) 42, 209, 233, 746, 1042, 1046
MboI GATC 6 cut(s) 40, 207, 231, 744, 1040, 1044
MboII GAAGA 2 cut(s) 418, 850
MhlI GDGCHC 2 cut(s) 194, 420
MlsI TGGCCA 1 cut(s) 677
MluCI AATT 5 cut(s) 181, 421, 495, 772, 1070
MluNI TGGCCA 1 cut(s) 677
MlyI GAGTC 1 cut(s) 552
MmeI TCCRAC 2 cut(s) 577, 926
Mox20I TGGCCA 1 cut(s) 677
Mph1103I ATGCAT 2 cut(s) 15, 70
MscI TGGCCA 1 cut(s) 677
MseI TTAA 2 cut(s) 215, 1081
MslI CAYNNNNRTG 2 cut(s) 98, 671
Msp20I TGGCCA 1 cut(s) 677
MspI CCGG 3 cut(s) 153, 584, 731
MspR9I CCNGG 3 cut(s) 27, 584, 661
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 2 cut(s) 27, 661
MwoI GCNNNNNNNGC 3 cut(s) 109, 344, 401
NciI CCSGG 1 cut(s) 584
NdeI CATATG 1 cut(s) 382
NdeII GATC 6 cut(s) 40, 207, 231, 744, 1040, 1044
NlaIV GGNNCC 4 cut(s) 24, 346, 528, 529
NmeAIII GCCGAG 1 cut(s) 975
NmuCI GTSAC 2 cut(s) 440, 464
NsiI ATGCAT 2 cut(s) 15, 70
NspI RCATGY 1 cut(s) 685
PagI TCATGA 1 cut(s) 228
PciI ACATGT 1 cut(s) 681
PcsI WCGNNNNNNNCGW 2 cut(s) 40, 603
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 1 cut(s) 600
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 2 cut(s) 55, 339
PkrI GCNGC 2 cut(s) 304, 307
PleI GAGTC 1 cut(s) 551
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 1 cut(s) 551
Ppu21I YACGTR 3 cut(s) 445, 607, 809
PpuMI RGGWCCY 1 cut(s) 527
PscI ACATGT 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 527
Psp6I CCWGG 2 cut(s) 25, 659
PspCI CACGTG 1 cut(s) 445
PspEI GGTNACC 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 25, 659
PspN4I GGNNCC 4 cut(s) 24, 346, 528, 529
PspPI GGNCC 2 cut(s) 175, 527
PspPPI RGGWCCY 1 cut(s) 527
PstI CTGCAG 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 413
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 2 cut(s) 98, 671
SaqAI TTAA 2 cut(s) 215, 1081
SatI GCNGC 2 cut(s) 303, 306
Sau3AI GATC 6 cut(s) 40, 207, 231, 744, 1040, 1044
Sau96I GGNCC 2 cut(s) 175, 527
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 3 cut(s) 27, 584, 661
SduI GDGCHC 2 cut(s) 194, 420
SfaNI GCATC 2 cut(s) 248, 413
SfcI CTRYAG 2 cut(s) 167, 306
SinI GGWCC 2 cut(s) 175, 527
SmiMI CAYNNNNRTG 2 cut(s) 98, 671
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 5 cut(s) 181, 421, 495, 772, 1070
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 3 cut(s) 25, 582, 659
StyI CCWWGG 3 cut(s) 435, 522, 871
TaaI ACNGT 4 cut(s) 36, 200, 415, 622
TaiI ACGT 4 cut(s) 401, 447, 609, 811
TaqI TCGA 4 cut(s) 43, 120, 747, 1043
TasI AATT 5 cut(s) 181, 421, 495, 772, 1070
TfiI GAWTC 1 cut(s) 600
Tru1I TTAA 2 cut(s) 215, 1081
Tru9I TTAA 2 cut(s) 215, 1081
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 2 cut(s) 440, 464
TseI GCWGC 2 cut(s) 302, 305
Tsp45I GTSAC 2 cut(s) 440, 464
TspDTI ATGAA 3 cut(s) 214, 790, 826
TspRI CASTG 1 cut(s) 678
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 2 cut(s) 55, 339
VpaK11BI GGWCC 2 cut(s) 175, 527
XagI CCTNNNNNAGG 1 cut(s) 1029
XapI RAATTY 2 cut(s) 772, 1070
XceI RCATGY 1 cut(s) 685
XmiI GTMKAC 2 cut(s) 141, 369
XspI CTAG 1 cut(s) 786
Zsp2I ATGCAT 2 cut(s) 15, 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.