Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

70139088 .. 70139530

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0577100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTGTGACCGTGCATATCCAAGAAAACTTTCCTTTCACTATCTTGAAGAGCTCAAGAACGAATTCGAGCGTAAAACCAGGAAGTTGCACCAGGACACTCGTACTCAGCGCAACATTTCAATGTTGAATGAGGAACTCTCTGAAGTTAACAAAATAATGACTCGCGATGTTTTAGAAGTTCTTGTCATCGATGATAATATGGACCAGCTCAGTGAAAAGACCAGTTGTTTGGTATCAGAAACTCGTGCATATGCTGATAAGGGAAGAGACTTGAATCGACAGGCTCTGATTCATGAATGGGCTCCTGTTGCCATTGTTCTTGGAGTAGTTTTCCTCCTTTTCTGGCTCCAAACGAAGATCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

121

Amino Acids

14.37

Weight (kDa)

6.3

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	1 - 40	1.2e-07	Regulated-SNARE-like domain
Synaptobrevin	PF00957	39 - 116	4.6e-13	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	47, 120, 127, 274
AjnI	CCWGG	2 cut(s)	77, 90
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AluBI	AGCT	2 cut(s)	52, 208
AluI	AGCT	2 cut(s)	52, 208
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
Asp700I	GAANNNNTTC	2 cut(s)	28, 62
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	202
BanII	GRGCYC	2 cut(s)	54, 304
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	54
BciT130I	CCWGG	2 cut(s)	79, 92
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	364
BglII	AGATCT	1 cut(s)	357
Bme1390I	CCNGG	2 cut(s)	79, 92
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	303, 347
BmrFI	CCNGG	2 cut(s)	79, 92
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpuEI	CTTGAG	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	79, 92
BseCI	ATCGAT	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	119, 223
BseNI	ACTGG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	54, 304
Bsp143I	GATC	1 cut(s)	357
Bsp68I	TCGCGA	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	118, 222
BspDI	ATCGAT	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	303, 347
BspQI	GCTCTTC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	79, 92
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	42, 259
BstDEI	CTNAG	2 cut(s)	105, 209
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	79, 92
BstSCI	CCNGG	2 cut(s)	77, 90
BstUI	CGCG	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	357
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	217
BtuMI	TCGCGA	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	286
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	5 cut(s)	52, 208, 284, 302, 346
CviKI_1	RGCY	5 cut(s)	52, 208, 284, 302, 346
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	2 cut(s)	105, 209
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	42, 259
EarI	CTCTTC	2 cut(s)	42, 259
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	2 cut(s)	54, 304
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	77, 90
EcoT38I	GRGCYC	2 cut(s)	54, 304
FaeI	CATG	1 cut(s)	296
FaiI	YATR	5 cut(s)	16, 200, 250, 252, 294
FatI	CATG	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	250
FriOI	GRGCYC	2 cut(s)	54, 304
FspBI	CTAG	1 cut(s)	364
GlaI	GCGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	160, 274, 289
HpaI	GTTAAC	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	142, 238, 288
Hpy188III	TCNNGA	4 cut(s)	44, 55, 164, 293
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	14, 88, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	105, 209
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	1 cut(s)	109
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	357
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	307, 351
LpnPI	CCDG	9 cut(s)	64, 77, 91, 104, 218, 235, 266, 318, 328
MaeI	CTAG	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	2 cut(s)	59, 276
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	54, 304
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	124, 344
MroXI	GAANNNNTTC	2 cut(s)	28, 62
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	79, 92
MvaI	CCWGG	2 cut(s)	79, 92
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	2 cut(s)	303, 347
NmuCI	GTSAC	1 cut(s)	5
NruI	TCGCGA	1 cut(s)	165
PagI	TCATGA	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	42
PdmI	GAANNNNTTC	2 cut(s)	28, 62
PfeI	GAWTC	2 cut(s)	274, 289
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	77, 90
PspGI	CCWGG	2 cut(s)	77, 90
PspN4I	GGNNCC	2 cut(s)	303, 347
PspPI	GGNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	357
RruI	TCGCGA	1 cut(s)	165
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	79, 92
SduI	GDGCHC	2 cut(s)	54, 304
SetI	ASST	2 cut(s)	54, 210
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	364
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	77, 90
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	66, 189, 277
TasI	AATT	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	274, 289
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	281, 309
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	62
XmnI	GAANNNNTTC	2 cut(s)	28, 62
XspI	CTAG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.