Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

88074881 .. 88126616

Gene Structure 51736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG669100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGGAACTCAAACGCAGAACGGTGCCGATAAAACTTACGACCAGACAGAGATGGACGAAAAATTAGCCAAGGAAAAGGCAATTAATGAGTGGCTTCCAATTACTTCTTCAAGGAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTTACGGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCAGAGCTTGGATGGGGTCCTGGTATAGTTATTTTGGTCCTTTCATGGGTCATCACATTGTACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAGCATGCATTTGGTGAAAAGCTTGGTCTTTACATTGTGGTGCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAACATCGCTGCAGAAGGTCCATGACACCGTGTGCTCAGACTGCAAAAAGATCAAATTGACTTACTTCATCATGATCTTTGCCTCTGTTCACTTTGTGCTTTCCCACCTTCCCAACTTCCACTCCATCTCCGGCGTGTCTTTGGCTGCAGCTGTCATGTCCTTGAGTTACTCTACCATAGCATGGACTGCTGCGCTAGACAAGGGTGTGGTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACAGGAAAATTTTTCAACTTCTTAGCTGCATTGGGTGAAGTGGCTTTTGCGTATGCTGGCCATAATGTAGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCCATGTGGAAAGGAGTCATTTTTGCCTATATAATTGTGGCTTTGTGCTACTTCCCAGTTTCTCTGGTGGGATATTACATATATGGCAATTCACTTGAAGACAACATCCTCGTCACATTGGAAAGACCCAAATGGCTAATTGCAATGGCCAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGGTTTATGCAATGCCAGTGTTTGACATGATGGAAACTCTACTGGTAAAGAAGTTGAATTTCAGGCCAACTTTTATGCTTCGCTTCATTACACGAACTTCATATGTTGGGAAACGTTTAGATCGTTACCATGAATTGGGTCAGCATGCATTTGGTGAAAAGATTGGTCTTTACATCGTGGTGCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAAAATCGCTGCAGAAGGTTACTTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

417

Amino Acids

46.69

Weight (kDa)

8.38

Isoelectric Point (pI)

24.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 364	8.3e-90	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	44 - 178	7.2e-10	Tryptophan/tyrosine permease family
Aa_trans	PF01490	358 - 416	2.9e-09	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	796
AccB1I	GGYRCC	4 cut(s)	23, 370, 796, 1165
AccB7I	CCANNNNNTGG	3 cut(s)	325, 609, 1120
AclI	AACGTT	2 cut(s)	304, 1099
AcoI	YGGCCR	3 cut(s)	153, 733, 945
AcsI	RAATTY	2 cut(s)	683, 1042
AdeI	CACNNNGTG	2 cut(s)	459, 523
AfaI	GTAC	4 cut(s)	257, 413, 798, 1208
AfiI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1120
AflIII	ACRYGT	1 cut(s)	951
AgsI	TTSAA	6 cut(s)	111, 392, 691, 896, 1042, 1187
AjnI	CCWGG	2 cut(s)	214, 295
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 750, 782
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	6 cut(s)	167, 202, 352, 578, 701, 981
AluI	AGCT	6 cut(s)	167, 202, 352, 578, 701, 981
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	4 cut(s)	153, 733, 945, 1049
ApeKI	GCWGC	6 cut(s)	436, 572, 575, 617, 701, 1231
ApoI	RAATTY	2 cut(s)	683, 1042
AseI	ATTAAT	1 cut(s)	84
Asp718I	GGTACC	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	3 cut(s)	212, 232, 445
AsuHPI	GGTGA	5 cut(s)	356, 412, 722, 1151, 1207
AvaII	GGWCC	3 cut(s)	212, 232, 445
BaeI	ACNNNNGTAYC	2 cut(s)	788, 821
BalI	TGGCCA	2 cut(s)	735, 947
BanI	GGYRCC	4 cut(s)	23, 370, 796, 1165
BbsI	GAAGAC	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	464
BbvCI	CCTCAGC	2 cut(s)	375, 1170
BbvI	GCAGC	6 cut(s)	423, 559, 587, 604, 688, 1218
BccI	CCATC	5 cut(s)	46, 201, 283, 560, 1009
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	2 cut(s)	216, 297
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	4 cut(s)	437, 573, 675, 1232
BisI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1232
BlsI	GCNGC	6 cut(s)	438, 574, 577, 619, 703, 1233
Bme1390I	CCNGG	2 cut(s)	216, 297
Bme18I	GGWCC	3 cut(s)	212, 232, 445
BmgT120I	GGNCC	3 cut(s)	212, 232, 445
BmiI	GGNNCC	6 cut(s)	25, 213, 294, 372, 798, 1167
BmrFI	CCNGG	2 cut(s)	216, 297
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	903
Bpu10I	CCTNAGC	2 cut(s)	375, 1170
BpuEI	CTTGAG	1 cut(s)	610
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	5 cut(s)	69, 156, 192, 296, 792
BsaWI	WCCGGW	2 cut(s)	422, 1217
BsaXI	ACNNNNNCTCC	6 cut(s)	156, 186, 533, 539, 563, 569
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1120
Bse1I	ACTGG	3 cut(s)	854, 1001, 1032
Bse3DI	GCAATG	2 cut(s)	948, 1002
BseBI	CCWGG	2 cut(s)	216, 297
BseDI	CCNNGG	5 cut(s)	69, 156, 192, 296, 792
BseGI	GGATG	3 cut(s)	212, 903, 963
BseLI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1120
BseMI	GCAATG	2 cut(s)	948, 1002
BseMII	CTCAG	4 cut(s)	389, 477, 771, 1184
BseNI	ACTGG	3 cut(s)	854, 1001, 1032
BseXI	GCAGC	6 cut(s)	423, 559, 587, 604, 688, 1218
BshFI	GGCC	4 cut(s)	155, 735, 947, 1051
BshNI	GGYRCC	4 cut(s)	23, 370, 796, 1165
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	3 cut(s)	423, 558, 1218
BslI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1120
BsmAI	GTCTC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	4 cut(s)	155, 735, 947, 1051
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	3 cut(s)	255, 411, 1206
Bsp143I	GATC	4 cut(s)	310, 477, 501, 1105
Bsp19I	CCATGG	2 cut(s)	156, 192
BspANI	GGCC	4 cut(s)	155, 735, 947, 1051
BspCNI	CTCAG	4 cut(s)	388, 476, 772, 1183
BspHI	TCATGA	2 cut(s)	498, 1250
BspLI	GGNNCC	6 cut(s)	25, 213, 294, 372, 798, 1167
BspMAI	CTGCAG	3 cut(s)	441, 577, 1236
BspT107I	GGYRCC	4 cut(s)	23, 370, 796, 1165
BspTNI	GGTCTC	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	948, 1002
BsrGI	TGTACA	3 cut(s)	255, 411, 1206
BsrI	ACTGG	3 cut(s)	854, 1001, 1032
BssECI	CCNNGG	5 cut(s)	69, 156, 192, 296, 792
BssMI	GATC	4 cut(s)	310, 477, 501, 1105
BssT1I	CCWWGG	4 cut(s)	69, 156, 192, 792
Bst2UI	CCWGG	2 cut(s)	216, 297
Bst4CI	ACNGT	2 cut(s)	23, 457
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstAUI	TGTACA	3 cut(s)	255, 411, 1206
BstC8I	GCNNGC	3 cut(s)	336, 733, 1131
BstDEI	CTNAG	5 cut(s)	375, 463, 697, 780, 1170
BstDSI	CCRYGG	2 cut(s)	156, 192
BstEII	GGTNACC	2 cut(s)	418, 1213
BstF5I	GGATG	3 cut(s)	212, 903, 963
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	4 cut(s)	313, 480, 504, 1108
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	4 cut(s)	310, 477, 501, 1105
BstMWI	GCNNNNNNNGC	2 cut(s)	468, 614
BstNI	CCWGG	2 cut(s)	216, 297
BstNSI	RCATGY	3 cut(s)	338, 955, 1133
BstPI	GGTNACC	2 cut(s)	418, 1213
BstSCI	CCNGG	2 cut(s)	214, 295
BstSFI	CTRYAG	4 cut(s)	437, 573, 675, 1232
BstV1I	GCAGC	6 cut(s)	423, 559, 587, 604, 688, 1218
BstV2I	GAAGAC	1 cut(s)	903
BstXI	CCANNNNNNTGG	1 cut(s)	974
BsuRI	GGCC	4 cut(s)	155, 735, 947, 1051
BtgI	CCRYGG	2 cut(s)	156, 192
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	212, 903, 963
BtsIMutI	CAGTG	1 cut(s)	1008
Cac8I	GCNNGC	3 cut(s)	336, 733, 1131
CciI	TCATGA	2 cut(s)	498, 1250
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	3 cut(s)	212, 232, 445
Csp6I	GTAC	4 cut(s)	256, 412, 797, 1207
CviQI	GTAC	4 cut(s)	256, 412, 797, 1207
DdeI	CTNAG	5 cut(s)	375, 463, 697, 780, 1170
DpnI	GATC	4 cut(s)	312, 479, 503, 1107
DpnII	GATC	4 cut(s)	310, 477, 501, 1105
DraIII	CACNNNGTG	2 cut(s)	459, 523
EaeI	YGGCCR	3 cut(s)	153, 733, 945
Eco130I	CCWWGG	4 cut(s)	69, 156, 192, 792
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	3 cut(s)	212, 232, 445
Eco91I	GGTNACC	2 cut(s)	418, 1213
EcoO109I	RGGNCCY	1 cut(s)	212
EcoO65I	GGTNACC	2 cut(s)	418, 1213
EcoRII	CCWGG	2 cut(s)	214, 295
EcoT14I	CCWWGG	4 cut(s)	69, 156, 192, 792
EcoT22I	ATGCAT	3 cut(s)	285, 340, 1135
ErhI	CCWWGG	4 cut(s)	69, 156, 192, 792
FauNDI	CATATG	1 cut(s)	1087
Fnu4HI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1232
FokI	GGATG	3 cut(s)	219, 890, 950
Fsp4HI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1232
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1232
HaeIII	GGCC	4 cut(s)	155, 735, 947, 1051
HapII	CCGG	3 cut(s)	423, 558, 1218
HhaI	GCGC	1 cut(s)	622
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	1 cut(s)	813
HpaII	CCGG	3 cut(s)	423, 558, 1218
HphI	GGTGA	5 cut(s)	356, 412, 722, 1151, 1207
Hpy166II	GTNNAC	4 cut(s)	258, 412, 517, 1207
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	2 cut(s)	499, 1251
Hpy8I	GTNNAC	4 cut(s)	258, 412, 517, 1207
HpyAV	CCTTC	5 cut(s)	436, 545, 780, 798, 1231
HpyCH4III	ACNGT	2 cut(s)	23, 457
HpyCH4IV	ACGT	2 cut(s)	304, 1099
HpyF10VI	GCNNNNNNNGC	2 cut(s)	468, 614
HpyF3I	CTNAG	5 cut(s)	375, 463, 697, 780, 1170
HpySE526I	ACGT	2 cut(s)	304, 1099
HspAI	GCGC	1 cut(s)	620
KpnI	GGTACC	1 cut(s)	800
Kzo9I	GATC	4 cut(s)	310, 477, 501, 1105
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	6 cut(s)	423, 559, 587, 604, 688, 1218
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	2 cut(s)	304, 1099
MaeIII	GTNAC	9 cut(s)	148, 314, 418, 593, 656, 910, 1109, 1213, 1240
MalI	GATC	4 cut(s)	312, 479, 503, 1107
MboI	GATC	4 cut(s)	310, 477, 501, 1105
MboII	GAAGA	2 cut(s)	99, 908
MhlI	GDGCHC	1 cut(s)	464
MlsI	TGGCCA	2 cut(s)	735, 947
MluNI	TGGCCA	2 cut(s)	735, 947
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	7 cut(s)	384, 419, 520, 758, 917, 1179, 1214
Mox20I	TGGCCA	2 cut(s)	735, 947
Mph1103I	ATGCAT	3 cut(s)	285, 340, 1135
MscI	TGGCCA	2 cut(s)	735, 947
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	368, 1163
Msp20I	TGGCCA	2 cut(s)	735, 947
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	3 cut(s)	423, 558, 1218
MspR9I	CCNGG	2 cut(s)	216, 297
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	2 cut(s)	216, 297
MwoI	GCNNNNNNNGC	2 cut(s)	468, 614
NcoI	CCATGG	2 cut(s)	156, 192
NdeI	CATATG	1 cut(s)	1087
NdeII	GATC	4 cut(s)	310, 477, 501, 1105
NlaIV	GGNNCC	6 cut(s)	25, 213, 294, 372, 798, 1167
NmuCI	GTSAC	3 cut(s)	418, 910, 1213
NsiI	ATGCAT	3 cut(s)	285, 340, 1135
NspI	RCATGY	3 cut(s)	338, 955, 1133
PaeI	GCATGC	2 cut(s)	338, 1133
PagI	TCATGA	2 cut(s)	498, 1250
PciI	ACATGT	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	2 cut(s)	310, 1105
PctI	GAATGC	1 cut(s)	121
PflMI	CCANNNNNTGG	3 cut(s)	325, 609, 1120
PkrI	GCNGC	6 cut(s)	438, 574, 577, 619, 703, 1233
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	951
PshBI	ATTAAT	1 cut(s)	84
Psp1406I	AACGTT	2 cut(s)	304, 1099
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	214, 295
PspEI	GGTNACC	2 cut(s)	418, 1213
PspGI	CCWGG	2 cut(s)	214, 295
PspN4I	GGNNCC	6 cut(s)	25, 213, 294, 372, 798, 1167
PspPI	GGNCC	3 cut(s)	212, 232, 445
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	3 cut(s)	441, 577, 1236
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	4 cut(s)	257, 413, 798, 1208
RsaNI	GTAC	4 cut(s)	256, 412, 797, 1207
RseI	CAYNNNNRTG	2 cut(s)	368, 1163
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	6 cut(s)	437, 573, 576, 618, 702, 1232
Sau3AI	GATC	4 cut(s)	310, 477, 501, 1105
Sau96I	GGNCC	3 cut(s)	212, 232, 445
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	2 cut(s)	216, 297
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	4 cut(s)	437, 573, 675, 1232
SinI	GGWCC	3 cut(s)	212, 232, 445
SmiMI	CAYNNNNRTG	2 cut(s)	368, 1163
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SphI	GCATGC	2 cut(s)	338, 1133
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	2 cut(s)	214, 295
StyI	CCWWGG	4 cut(s)	69, 156, 192, 792
TaaI	ACNGT	2 cut(s)	23, 457
TaiI	ACGT	2 cut(s)	307, 1102
TaqI	TCGA	2 cut(s)	648, 750
TaqII	GACCGA	1 cut(s)	167
TatI	WGTACW	3 cut(s)	255, 411, 1206
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	1008
TseFI	GTSAC	3 cut(s)	418, 910, 1213
TseI	GCWGC	6 cut(s)	436, 572, 575, 617, 701, 1231
Tsp45I	GTSAC	3 cut(s)	418, 910, 1213
TspDTI	ATGAA	6 cut(s)	228, 484, 1060, 1074, 1131, 1236
TspRI	CASTG	1 cut(s)	1008
Van91I	CCANNNNNTGG	3 cut(s)	325, 609, 1120
VpaK11BI	GGWCC	3 cut(s)	212, 232, 445
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	2 cut(s)	683, 1042
XceI	RCATGY	3 cut(s)	338, 955, 1133
XspI	CTAG	1 cut(s)	623
Zsp2I	ATGCAT	3 cut(s)	285, 340, 1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.