Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Reverse (-)

1583757 .. 1588842

Gene Structure 5086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGGAACTCAAACACAGAACGGCGCCGATAAAACTTACGACCAGACAGAGATGGATGAAAAATTAGCCAGGGAAAAGGCAATTAATGATTGGCTTCCAATTACTTCTTCGAGGAATGCAAAATGGTGGTATTCCGCTTTTCACAATGTTACGGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCAGAGCTTGGATGGGGTCCTGGTATAGTTATTTTGGTCCTTTCATGGATCATCACATTATACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAGCATGCATTTGGTGAAAAACTTGGTCTTTACATTGTGGTGCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAAGATCGCTGCAGAAGGTTCATGACACTGTGTGCTCAGACTGCAAAAAAATCAAATTGACTTACTTCATCATGATCTTTGCCTCCGTTCACTTTGTGCTTTCCCACCTTCCCAACTTCAATTCCATCTCCGGCGTGTCTTTGGCCGCAGCTGTCATGTCCTTGAGTTACTCTACCATAGCATGGACTGCTGCGGTAGACAAGGGTGTGGTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACAGGAAAATTTTTCAACTTCTTAGCTGCATTGGGTGAAGTGGCTTTTGCGTATGCTGGCCATAATGTAGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGATACCTATGTGGAAAGGAGTCATTGTTGCCTACATAATTGTGGCTTTGTGCTACTTCCCAGTTGCTCTAGTAGGATATTACATATATGGAAATTCAGTTGATGACAACATCCTCGTCTCATTGGAAAGACCCAAATGGCTAATTGCAATGGCCAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGATTTATGCAATGCCAGTGTTTGACATGATGGAAACTGTACTGGTAAAGAAGTTGAATTTCAGGCCAACTTTTATGCTTCGCTTCGTTACACGAACTTTATATGTTGCTCCCTTGTGTAATGTGGCTTGCCATCTACAAACCAAAGAGATTCGGCTTATCCTGGTGGTGCAACTATATCTGCATCTTCTTTGGTGTTCTTTTGATGGTTCTATCACCAATTGGAGGGCTGAGATCAATCATAGTTCAAGCCAAGACCTACAAATTCTACTCATAAGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

422

Amino Acids

47.47

Weight (kDa)

7.64

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 371	7.6e-94	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	44 - 178	3.9e-10	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	23, 370
AccB7I	CCANNNNNTGG	2 cut(s)	325, 609
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	3 cut(s)	135, 573, 620
AclI	AACGTT	1 cut(s)	304
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	4 cut(s)	153, 570, 733, 945
AcsI	RAATTY	4 cut(s)	683, 886, 1042, 1248
AcyI	GRCGYC	1 cut(s)	24
AdeI	CACNNNGTG	2 cut(s)	459, 523
AfaI	GTAC	2 cut(s)	413, 1026
AfiI	CCNNNNNNNGG	3 cut(s)	325, 609, 1209
AflIII	ACRYGT	1 cut(s)	951
AgsI	TTSAA	5 cut(s)	392, 547, 691, 1042, 1233
AjnI	CCWGG	4 cut(s)	68, 214, 295, 1146
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 750, 782
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	5 cut(s)	167, 202, 578, 701, 981
AluI	AGCT	5 cut(s)	167, 202, 578, 701, 981
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	2 cut(s)	185, 916
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	5 cut(s)	153, 570, 733, 945, 1049
ApeKI	GCWGC	4 cut(s)	436, 575, 617, 701
ApoI	RAATTY	4 cut(s)	683, 886, 1042, 1248
AseI	ATTAAT	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	212, 232
AsuHPI	GGTGA	4 cut(s)	356, 412, 722, 1192
AvaII	GGWCC	2 cut(s)	212, 232
BaeI	ACNNNNGTAYC	2 cut(s)	788, 821
BalI	TGGCCA	2 cut(s)	735, 947
BanI	GGYRCC	2 cut(s)	23, 370
Bbv12I	GWGCWC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	423, 587, 604, 688
BccI	CCATC	7 cut(s)	46, 201, 283, 560, 1009, 1125, 1184
BceAI	ACGGC	2 cut(s)	37, 168
BciT130I	CCWGG	4 cut(s)	70, 216, 297, 1148
BcoDI	GTCTC	2 cut(s)	185, 916
BfaI	CTAG	1 cut(s)	863
BfmI	CTRYAG	2 cut(s)	437, 675
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
BlsI	GCNGC	5 cut(s)	438, 574, 577, 619, 703
Bme1390I	CCNGG	4 cut(s)	70, 216, 297, 1148
Bme18I	GGWCC	2 cut(s)	212, 232
BmgT120I	GGNCC	2 cut(s)	212, 232
BmiI	GGNNCC	4 cut(s)	25, 213, 294, 372
BmrFI	CCNGG	4 cut(s)	70, 216, 297, 1148
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	2 cut(s)	270, 1177
BmuI	ACTGGG	1 cut(s)	848
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	610
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	69, 156, 192, 296
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 609, 1209
Bse1I	ACTGG	3 cut(s)	854, 1001, 1032
Bse3DI	GCAATG	2 cut(s)	948, 1002
BseBI	CCWGG	4 cut(s)	70, 216, 297, 1148
BseDI	CCNNGG	4 cut(s)	69, 156, 192, 296
BseGI	GGATG	4 cut(s)	61, 212, 903, 963
BseLI	CCNNNNNNNGG	3 cut(s)	325, 609, 1209
BseMI	GCAATG	2 cut(s)	948, 1002
BseMII	CTCAG	4 cut(s)	389, 477, 771, 1206
BseNI	ACTGG	3 cut(s)	854, 1001, 1032
BseXI	GCAGC	4 cut(s)	423, 587, 604, 688
BshFI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
BshNI	GGYRCC	2 cut(s)	23, 370
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	423, 558
BslI	CCNNNNNNNGG	3 cut(s)	325, 609, 1209
BsmAI	GTCTC	2 cut(s)	185, 916
BsmBI	CGTCTC	1 cut(s)	916
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	243, 310, 431, 501, 1218
Bsp19I	CCATGG	2 cut(s)	156, 192
BspACI	CCGC	3 cut(s)	135, 573, 620
BspANI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
BspCNI	CTCAG	4 cut(s)	388, 476, 772, 1207
BspHI	TCATGA	2 cut(s)	448, 498
BspLI	GGNNCC	4 cut(s)	25, 213, 294, 372
BspMAI	CTGCAG	1 cut(s)	441
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	2 cut(s)	23, 370
BspTNI	GGTCTC	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	948, 1002
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	3 cut(s)	854, 1001, 1032
BssECI	CCNNGG	4 cut(s)	69, 156, 192, 296
BssMI	GATC	5 cut(s)	243, 310, 431, 501, 1218
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	156, 192
Bst2UI	CCWGG	4 cut(s)	70, 216, 297, 1148
Bst4CI	ACNGT	2 cut(s)	457, 1024
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	336, 733, 1114
BstDEI	CTNAG	5 cut(s)	375, 463, 697, 780, 1215
BstDSI	CCRYGG	2 cut(s)	156, 192
BstEII	GGTNACC	1 cut(s)	418
BstF5I	GGATG	4 cut(s)	61, 212, 903, 963
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	5 cut(s)	246, 313, 434, 504, 1221
BstMAI	GTCTC	2 cut(s)	185, 916
BstMBI	GATC	5 cut(s)	243, 310, 431, 501, 1218
BstMWI	GCNNNNNNNGC	2 cut(s)	468, 614
BstNI	CCWGG	4 cut(s)	70, 216, 297, 1148
BstNSI	RCATGY	2 cut(s)	338, 955
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	4 cut(s)	68, 214, 295, 1146
BstSFI	CTRYAG	2 cut(s)	437, 675
BstV1I	GCAGC	4 cut(s)	423, 587, 604, 688
BstXI	CCANNNNNNTGG	1 cut(s)	974
BsuRI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
BtgI	CCRYGG	2 cut(s)	156, 192
BtsCI	GGATG	4 cut(s)	61, 212, 903, 963
BtsIMutI	CAGTG	2 cut(s)	453, 1008
Cac8I	GCNNGC	3 cut(s)	336, 733, 1114
CciI	TCATGA	2 cut(s)	448, 498
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	212, 232
Csp6I	GTAC	2 cut(s)	412, 1025
CviQI	GTAC	2 cut(s)	412, 1025
DdeI	CTNAG	5 cut(s)	375, 463, 697, 780, 1215
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	5 cut(s)	245, 312, 433, 503, 1220
DpnII	GATC	5 cut(s)	243, 310, 431, 501, 1218
DraIII	CACNNNGTG	2 cut(s)	459, 523
EaeI	YGGCCR	4 cut(s)	153, 570, 733, 945
Eco130I	CCWWGG	2 cut(s)	156, 192
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	212, 232
Eco91I	GGTNACC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	418
EcoRII	CCWGG	4 cut(s)	68, 214, 295, 1146
EcoT14I	CCWWGG	2 cut(s)	156, 192
EcoT22I	ATGCAT	2 cut(s)	285, 340
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	156, 192
Esp3I	CGTCTC	1 cut(s)	916
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
FokI	GGATG	4 cut(s)	68, 219, 890, 950
Fsp4HI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
FspBI	CTAG	1 cut(s)	863
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	5 cut(s)	155, 572, 735, 947, 1051
HapII	CCGG	2 cut(s)	423, 558
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	813, 1135
HpaII	CCGG	2 cut(s)	423, 558
HphI	GGTGA	4 cut(s)	356, 412, 722, 1192
Hpy166II	GTNNAC	3 cut(s)	412, 517, 625
Hpy188I	TCNGA	2 cut(s)	466, 987
Hpy188III	TCNNGA	2 cut(s)	449, 499
Hpy8I	GTNNAC	3 cut(s)	412, 517, 625
HpyAV	CCTTC	4 cut(s)	436, 545, 780, 798
HpyCH4III	ACNGT	2 cut(s)	457, 1024
HpyCH4IV	ACGT	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	468, 614
HpyF3I	CTNAG	5 cut(s)	375, 463, 697, 780, 1215
HpySE526I	ACGT	1 cut(s)	304
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	1 cut(s)	24
KasI	GGCGCC	1 cut(s)	23
Kzo9I	GATC	5 cut(s)	243, 310, 431, 501, 1218
LmnI	GCTCC	2 cut(s)	164, 1099
Lsp1109I	GCAGC	4 cut(s)	423, 587, 604, 688
LweI	GCATC	2 cut(s)	270, 1177
MaeI	CTAG	1 cut(s)	863
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	6 cut(s)	148, 314, 418, 593, 656, 1072
MalI	GATC	5 cut(s)	245, 312, 433, 503, 1220
MboI	GATC	5 cut(s)	243, 310, 431, 501, 1218
MboII	GAAGA	3 cut(s)	99, 441, 1163
MfeI	CAATTG	1 cut(s)	1204
MhlI	GDGCHC	1 cut(s)	464
MlsI	TGGCCA	2 cut(s)	735, 947
MluNI	TGGCCA	2 cut(s)	735, 947
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	7 cut(s)	105, 384, 419, 520, 758, 917, 1203
Mox20I	TGGCCA	2 cut(s)	735, 947
Mph1103I	ATGCAT	2 cut(s)	285, 340
MscI	TGGCCA	2 cut(s)	735, 947
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	368, 833
Msp20I	TGGCCA	2 cut(s)	735, 947
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	2 cut(s)	423, 558
MspR9I	CCNGG	4 cut(s)	70, 216, 297, 1148
MunI	CAATTG	1 cut(s)	1204
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	4 cut(s)	70, 216, 297, 1148
MwoI	GCNNNNNNNGC	2 cut(s)	468, 614
NarI	GGCGCC	1 cut(s)	24
NcoI	CCATGG	2 cut(s)	156, 192
NdeII	GATC	5 cut(s)	243, 310, 431, 501, 1218
NlaIV	GGNNCC	4 cut(s)	25, 213, 294, 372
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	2 cut(s)	285, 340
NspI	RCATGY	2 cut(s)	338, 955
PaeI	GCATGC	1 cut(s)	338
PagI	TCATGA	2 cut(s)	448, 498
PciI	ACATGT	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	1135
PflMI	CCANNNNNTGG	2 cut(s)	325, 609
PkrI	GCNGC	5 cut(s)	438, 574, 577, 619, 703
PleI	GAGTC	1 cut(s)	821
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	951
PshBI	ATTAAT	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	4 cut(s)	68, 214, 295, 1146
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	4 cut(s)	68, 214, 295, 1146
PspN4I	GGNNCC	4 cut(s)	25, 213, 294, 372
PspPI	GGNCC	2 cut(s)	212, 232
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	2 cut(s)	413, 1026
RsaNI	GTAC	2 cut(s)	412, 1025
RseI	CAYNNNNRTG	2 cut(s)	368, 833
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
Sau3AI	GATC	5 cut(s)	243, 310, 431, 501, 1218
Sau96I	GGNCC	2 cut(s)	212, 232
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	4 cut(s)	70, 216, 297, 1148
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	2 cut(s)	270, 1177
SfcI	CTRYAG	2 cut(s)	437, 675
SfoI	GGCGCC	1 cut(s)	25
SinI	GGWCC	2 cut(s)	212, 232
SmiMI	CAYNNNNRTG	2 cut(s)	368, 833
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SphI	GCATGC	1 cut(s)	338
SsiI	CCGC	3 cut(s)	135, 573, 620
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	863
StyD4I	CCNGG	4 cut(s)	68, 214, 295, 1146
StyI	CCWWGG	2 cut(s)	156, 192
TaaI	ACNGT	2 cut(s)	457, 1024
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	110, 648, 750
TaqII	GACCGA	1 cut(s)	167
TatI	WGTACW	2 cut(s)	411, 1024
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	1 cut(s)	1135
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	2 cut(s)	460, 1008
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	4 cut(s)	436, 575, 617, 701
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	4 cut(s)	72, 228, 437, 484
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	2 cut(s)	460, 1008
Van91I	CCANNNNNTGG	2 cut(s)	325, 609
VpaK11BI	GGWCC	2 cut(s)	212, 232
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	4 cut(s)	683, 886, 1042, 1248
XceI	RCATGY	2 cut(s)	338, 955
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	1 cut(s)	863
Zsp2I	ATGCAT	2 cut(s)	285, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.