Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

70140771 .. 70141313

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0577200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTGTGGATGCCAACTCTTCTTCACACTCTTTCTGGGCATCTTGCCTTGATGAGGAGAGCTCTGCATTGCTGCAATTCAAGCGAAGCTTCCTCATCAATGCATCTAATTGTGATTACCCGAAAGTTTTGTCATGGAAACCACCTCTCCAAGGAGAAAACAACACATGCTGCTCATGGGACGGCGTCCAGTGTGATGATCGAGAAGACTGGTTATGTGATTAAGCTAGATCTCAGTAGCAGTTATCTCTATGGCTCTCTCAACTCCAGCAGCACCCTCTTCCGTCTAGTTCATCTTCAGATTCTCGACCTTGCCGATAATGAATTTAATGGTACGATCCTGGCTTTGTTGGGAAACCTTACCAAACTCACATATCTGTCACTTGGTTTTAATAATTTCAGTGGTTACATCCCGCCTTCATTTATATATCTTACCCAGCTTACAAGGCTTTCACTCAGTTCAAATCATTTAACTGGTCCAATCCCGGCTTCGTTGGGAAACCTTACCAAACTCATAGACCTGTCACGTAATTGGTTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

180

Amino Acids

19.92

Weight (kDa)

9.27

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	86 - 176	4.3e-07	Leucine-rich repeat region
LRR_8	PF13855	98 - 157	2.1e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	54, 151
AgsI	TTSAA	3 cut(s)	81, 462, 539
AjnI	CCWGG	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	2 cut(s)	472, 504
AluBI	AGCT	4 cut(s)	62, 89, 226, 439
AluI	AGCT	4 cut(s)	62, 89, 226, 439
Alw21I	GWGCWC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	331
ApeKI	GCWGC	3 cut(s)	72, 170, 270
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AspS9I	GGNCC	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	3 cut(s)	59, 157, 282
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	341
BcnI	CCSGG	1 cut(s)	485
BfaI	CTAG	2 cut(s)	227, 287
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	3 cut(s)	73, 171, 271
BlsI	GCNGC	3 cut(s)	74, 172, 272
Bme1390I	CCNGG	2 cut(s)	341, 485
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmrFI	CCNGG	2 cut(s)	341, 485
BmsI	GCATC	2 cut(s)	49, 112
BpiI	GAAGAC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 151
Bse1I	ACTGG	3 cut(s)	189, 214, 478
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	15, 408
BseLI	CCNNNNNNNGG	2 cut(s)	54, 151
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	247, 469
BseNI	ACTGG	3 cut(s)	189, 214, 478
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	59, 157, 282
BseYI	CCCAGC	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	54, 151
BsmFI	GGGAC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	198, 229, 336
BspACI	CCGC	1 cut(s)	413
BspCNI	CTCAG	2 cut(s)	246, 468
BspPI	GGATC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	3 cut(s)	189, 214, 478
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	198, 229, 336
BssNI	GRCGYC	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	341
Bst6I	CTCTTC	2 cut(s)	24, 284
BstACI	GRCGYC	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	527
BstDEI	CTNAG	2 cut(s)	233, 455
BstENI	CCTNNNNNAGG	2 cut(s)	52, 149
BstF5I	GGATG	2 cut(s)	15, 408
BstKTI	GATC	3 cut(s)	201, 232, 339
BstMBI	GATC	3 cut(s)	198, 229, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 445
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	339, 483
BstV1I	GCAGC	3 cut(s)	59, 157, 282
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	15, 408
BtsIMutI	CAGTG	2 cut(s)	196, 406
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	3 cut(s)	134, 167, 176
CviJI	RGCY	8 cut(s)	62, 89, 226, 255, 344, 439, 448, 488
CviKI_1	RGCY	8 cut(s)	62, 89, 226, 255, 344, 439, 448, 488
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	2 cut(s)	233, 455
DpnI	GATC	3 cut(s)	200, 231, 338
DpnII	GATC	3 cut(s)	198, 229, 336
Eam1104I	CTCTTC	2 cut(s)	24, 284
EarI	CTCTTC	2 cut(s)	24, 284
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	62
EcoNI	CCTNNNNNAGG	2 cut(s)	52, 149
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	137, 170, 179
FaiI	YATR	9 cut(s)	135, 168, 177, 216, 252, 373, 425, 427, 515
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	3 cut(s)	133, 166, 175
FauI	CCCGC	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	73, 171, 271
FokI	GGATG	2 cut(s)	22, 395
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	3 cut(s)	73, 171, 271
FspBI	CTAG	2 cut(s)	227, 287
GluI	GCNGC	3 cut(s)	73, 171, 271
GsaI	CCCAGC	1 cut(s)	439
GsuI	CTGGAG	1 cut(s)	250
HapII	CCGG	1 cut(s)	485
HgaI	GACGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	137, 170, 179
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	485
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	202, 305
HpyAV	CCTTC	1 cut(s)	426
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	3 cut(s)	67, 75, 103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 445
HpyF3I	CTNAG	2 cut(s)	233, 455
HpySE526I	ACGT	1 cut(s)	526
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	137, 170, 179
Kzo9I	GATC	3 cut(s)	198, 229, 336
Lsp1109I	GCAGC	3 cut(s)	59, 157, 282
LweI	GCATC	2 cut(s)	49, 112
MaeI	CTAG	2 cut(s)	227, 287
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	3 cut(s)	378, 404, 522
MalI	GATC	3 cut(s)	200, 231, 338
MboI	GATC	3 cut(s)	198, 229, 336
MboII	GAAGA	5 cut(s)	11, 14, 217, 271, 287
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	5 cut(s)	76, 108, 323, 394, 529
MnlI	CCTC	4 cut(s)	48, 103, 155, 287
Mph1103I	ATGCAT	1 cut(s)	105
MseI	TTAA	4 cut(s)	222, 327, 390, 470
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	2 cut(s)	341, 485
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	81, 445
NciI	CCSGG	1 cut(s)	485
NdeII	GATC	3 cut(s)	198, 229, 336
NlaIII	CATG	3 cut(s)	137, 170, 179
NmuCI	GTSAC	2 cut(s)	378, 522
NsiI	ATGCAT	1 cut(s)	105
NspI	RCATGY	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	301
PflFI	GACNNNGTC	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	74, 172, 272
Ppu21I	YACGTR	1 cut(s)	527
Psp124BI	GAGCTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	4 cut(s)	222, 327, 390, 470
SatI	GCNGC	3 cut(s)	73, 171, 271
Sau3AI	GATC	3 cut(s)	198, 229, 336
Sau96I	GGNCC	1 cut(s)	476
ScrFI	CCNGG	2 cut(s)	341, 485
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	49, 112
SinI	GGWCC	1 cut(s)	476
Sse9I	AATT	5 cut(s)	76, 108, 323, 394, 529
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	2 cut(s)	227, 287
SstI	GAGCTC	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	339, 483
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	2 cut(s)	201, 306
TasI	AATT	5 cut(s)	76, 108, 323, 394, 529
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	4 cut(s)	222, 327, 390, 470
Tru9I	TTAA	4 cut(s)	222, 327, 390, 470
TscAI	CASTG	2 cut(s)	196, 406
TseFI	GTSAC	2 cut(s)	378, 522
TseI	GCWGC	3 cut(s)	72, 170, 270
Tsp45I	GTSAC	2 cut(s)	378, 522
TspDTI	ATGAA	3 cut(s)	281, 336, 408
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	2 cut(s)	196, 406
Tth111I	GACNNNGTC	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	476
XagI	CCTNNNNNAGG	2 cut(s)	52, 149
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	2 cut(s)	227, 287
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.