Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

86999592 .. 87003784

Gene Structure 4193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGGAACTCAAACGCAGAACGGTGCCGATAAAATTTACGACCAGACAGAGATGGATGAAAAATTAGCCAGGGAAAAGGCAATTAATGATTGGCTTCCAATTACTTCTTCGAGGAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTCACGGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCAGAGCTTGGATGGGGTCCTGGTATAGCTATTTTGGTCCTTTCATGGGTCATCACATTATACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAGCATGCATTTGGTGAAAAACTTGGTCTTTACATTGTGGTGCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAAGATCGCTGCAGAAGGTCCATGACACTGTGTGCTCAGACTGCAAAAAAATCAAATTGACTTACTTCATCATGATCTTTGCCTCTGTTCACTTTGTGCTTTCCCACCTTCCCAACTTCAACTCCATCTCCGGCGTGTCTTTGGCCGCAGCTGTCATGTCCTTGAGTTACTCTACCATAGCATGGACTGCTGCGGTAGACAAGGGTGTGGTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACGGGAAAATTTTTCAACTTCTTAGCTGCATTGGGTGAAGTGGCTTTTGCGTATGCTGGCCATAATGTAGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCTATGTGGAAAGGAGTCATTGTTGCCTACATAATTGTGGCTTTGTGCTACTTCCCAGTTGCTCTAGTAGGATATTACATATATGGAAATTCAGTTGATGACAACATCCTCGTCTCATTGGAAAGACCCAAATGGCTAATTGCAATGGCCAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGATTTATGCAATGCCAGTGTTTGACATGATGGAAACTGTACTGGTAAAGAAGTTGAATTTCAGGCCAACTTTTATGCTTCGCTTCATTACACGAACTTTATATGTTGCAATTACCATGTTTGTCGGAATCACATTCCCTTTCTTCAGTGGTCTCCTTGGATTTTTTGGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTGTGTAATGTGGCTTGCCATCTACAAACCAAAGAGATTCGGCTTATCCTGGTGGTGCAACTATATCTGCATCTTCTTTGGTGTTCTTTTGATGGTTCTATCACCAATTGGAGGGCTGAGATCAATCATCATTCAAGCCAAGACCTACAAATTCTACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

450

Amino Acids

50.59

Weight (kDa)

8.93

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 434	3.2e-114	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	44 - 178	2.1e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	796
AccB1I	GGYRCC	3 cut(s)	23, 370, 796
AccB7I	CCANNNNNTGG	2 cut(s)	325, 609
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	2 cut(s)	573, 620
AclI	AACGTT	1 cut(s)	304
AcoI	YGGCCR	4 cut(s)	153, 570, 733, 945
AcsI	RAATTY	5 cut(s)	33, 683, 886, 1042, 1340
AcuI	CTGAAG	1 cut(s)	1114
AdeI	CACNNNGTG	2 cut(s)	459, 523
AfaI	GTAC	3 cut(s)	413, 798, 1026
AfiI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
AflIII	ACRYGT	1 cut(s)	951
AgsI	TTSAA	5 cut(s)	392, 547, 691, 1042, 1325
AjnI	CCWGG	4 cut(s)	68, 214, 295, 1238
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 750, 782
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	6 cut(s)	167, 202, 224, 578, 701, 981
AluI	AGCT	6 cut(s)	167, 202, 224, 578, 701, 981
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	3 cut(s)	185, 916, 1142
AoxI	GGCC	5 cut(s)	153, 570, 733, 945, 1049
ApeKI	GCWGC	4 cut(s)	436, 575, 617, 701
ApoI	RAATTY	5 cut(s)	33, 683, 886, 1042, 1340
AseI	ATTAAT	1 cut(s)	84
Asp718I	GGTACC	1 cut(s)	796
AspS9I	GGNCC	3 cut(s)	212, 232, 445
AsuHPI	GGTGA	4 cut(s)	356, 412, 722, 1284
AvaII	GGWCC	3 cut(s)	212, 232, 445
BaeI	ACNNNNGTAYC	2 cut(s)	788, 821
BalI	TGGCCA	2 cut(s)	735, 947
BanI	GGYRCC	3 cut(s)	23, 370, 796
Bbv12I	GWGCWC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	423, 587, 604, 688
BccI	CCATC	7 cut(s)	46, 201, 283, 560, 1009, 1217, 1276
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	4 cut(s)	70, 216, 297, 1240
BcoDI	GTCTC	3 cut(s)	185, 916, 1142
BfaI	CTAG	1 cut(s)	863
BfmI	CTRYAG	1 cut(s)	437
BisI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
BlsI	GCNGC	5 cut(s)	438, 574, 577, 619, 703
Bme1390I	CCNGG	4 cut(s)	70, 216, 297, 1240
Bme18I	GGWCC	3 cut(s)	212, 232, 445
BmgT120I	GGNCC	3 cut(s)	212, 232, 445
BmiI	GGNNCC	5 cut(s)	25, 213, 294, 372, 798
BmrFI	CCNGG	4 cut(s)	70, 216, 297, 1240
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	2 cut(s)	270, 1269
BmuI	ACTGGG	1 cut(s)	848
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	610
BsaI	GGTCTC	2 cut(s)	185, 1142
BsaJI	CCNNGG	6 cut(s)	69, 156, 192, 296, 792, 1141
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	8 cut(s)	156, 186, 533, 539, 563, 569, 804, 834
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
Bse1I	ACTGG	3 cut(s)	854, 1001, 1032
Bse3DI	GCAATG	2 cut(s)	948, 1002
BseBI	CCWGG	4 cut(s)	70, 216, 297, 1240
BseDI	CCNNGG	6 cut(s)	69, 156, 192, 296, 792, 1141
BseGI	GGATG	4 cut(s)	61, 212, 903, 963
BseLI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
BseMI	GCAATG	2 cut(s)	948, 1002
BseMII	CTCAG	4 cut(s)	389, 477, 771, 1298
BseNI	ACTGG	3 cut(s)	854, 1001, 1032
BseXI	GCAGC	4 cut(s)	423, 587, 604, 688
BshFI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
BshNI	GGYRCC	3 cut(s)	23, 370, 796
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	423, 558
BslI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
BsmAI	GTCTC	3 cut(s)	185, 916, 1142
BsmBI	CGTCTC	1 cut(s)	916
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
Bso31I	GGTCTC	2 cut(s)	185, 1142
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	4 cut(s)	310, 431, 501, 1310
Bsp19I	CCATGG	2 cut(s)	156, 192
BspACI	CCGC	2 cut(s)	573, 620
BspANI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
BspCNI	CTCAG	4 cut(s)	388, 476, 772, 1299
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	5 cut(s)	25, 213, 294, 372, 798
BspMAI	CTGCAG	1 cut(s)	441
BspT107I	GGYRCC	3 cut(s)	23, 370, 796
BspTNI	GGTCTC	2 cut(s)	185, 1142
BsrDI	GCAATG	2 cut(s)	948, 1002
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	3 cut(s)	854, 1001, 1032
BssECI	CCNNGG	6 cut(s)	69, 156, 192, 296, 792, 1141
BssMI	GATC	4 cut(s)	310, 431, 501, 1310
BssT1I	CCWWGG	4 cut(s)	156, 192, 792, 1141
Bst2UI	CCWGG	4 cut(s)	70, 216, 297, 1240
Bst4CI	ACNGT	3 cut(s)	23, 457, 1024
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	336, 733, 1206
BstDEI	CTNAG	5 cut(s)	375, 463, 697, 780, 1307
BstDSI	CCRYGG	2 cut(s)	156, 192
BstEII	GGTNACC	1 cut(s)	418
BstF5I	GGATG	4 cut(s)	61, 212, 903, 963
BstKTI	GATC	4 cut(s)	313, 434, 504, 1313
BstMAI	GTCTC	3 cut(s)	185, 916, 1142
BstMBI	GATC	4 cut(s)	310, 431, 501, 1310
BstMWI	GCNNNNNNNGC	2 cut(s)	468, 614
BstNI	CCWGG	4 cut(s)	70, 216, 297, 1240
BstNSI	RCATGY	2 cut(s)	338, 955
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	4 cut(s)	68, 214, 295, 1238
BstSFI	CTRYAG	1 cut(s)	437
BstV1I	GCAGC	4 cut(s)	423, 587, 604, 688
BstXI	CCANNNNNNTGG	1 cut(s)	974
BsuRI	GGCC	5 cut(s)	155, 572, 735, 947, 1051
BtgI	CCRYGG	2 cut(s)	156, 192
BtsCI	GGATG	4 cut(s)	61, 212, 903, 963
BtsIMutI	CAGTG	3 cut(s)	453, 1008, 1138
Cac8I	GCNNGC	3 cut(s)	336, 733, 1206
CciI	TCATGA	1 cut(s)	498
Cfr13I	GGNCC	3 cut(s)	212, 232, 445
Csp6I	GTAC	3 cut(s)	412, 797, 1025
CviQI	GTAC	3 cut(s)	412, 797, 1025
DdeI	CTNAG	5 cut(s)	375, 463, 697, 780, 1307
DpnI	GATC	4 cut(s)	312, 433, 503, 1312
DpnII	GATC	4 cut(s)	310, 431, 501, 1310
DraIII	CACNNNGTG	2 cut(s)	459, 523
EaeI	YGGCCR	4 cut(s)	153, 570, 733, 945
Eco130I	CCWWGG	4 cut(s)	156, 192, 792, 1141
Eco31I	GGTCTC	2 cut(s)	185, 1142
Eco47I	GGWCC	3 cut(s)	212, 232, 445
Eco57I	CTGAAG	1 cut(s)	1114
Eco91I	GGTNACC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	418
EcoRII	CCWGG	4 cut(s)	68, 214, 295, 1238
EcoT14I	CCWWGG	4 cut(s)	156, 192, 792, 1141
EcoT22I	ATGCAT	2 cut(s)	285, 340
ErhI	CCWWGG	4 cut(s)	156, 192, 792, 1141
Esp3I	CGTCTC	1 cut(s)	916
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
FokI	GGATG	4 cut(s)	68, 219, 890, 950
Fsp4HI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
FspBI	CTAG	1 cut(s)	863
GluI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
HaeIII	GGCC	5 cut(s)	155, 572, 735, 947, 1051
HapII	CCGG	2 cut(s)	423, 558
HinfI	GANTC	3 cut(s)	813, 1113, 1227
HpaII	CCGG	2 cut(s)	423, 558
HphI	GGTGA	4 cut(s)	356, 412, 722, 1284
Hpy166II	GTNNAC	3 cut(s)	412, 517, 625
Hpy188I	TCNGA	3 cut(s)	466, 987, 1112
Hpy188III	TCNNGA	1 cut(s)	499
Hpy8I	GTNNAC	3 cut(s)	412, 517, 625
HpyAV	CCTTC	4 cut(s)	436, 545, 780, 798
HpyCH4III	ACNGT	3 cut(s)	23, 457, 1024
HpyCH4IV	ACGT	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	468, 614
HpyF3I	CTNAG	5 cut(s)	375, 463, 697, 780, 1307
HpySE526I	ACGT	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	800
Kzo9I	GATC	4 cut(s)	310, 431, 501, 1310
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	4 cut(s)	423, 587, 604, 688
LweI	GCATC	2 cut(s)	270, 1269
MaeI	CTAG	1 cut(s)	863
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	5 cut(s)	148, 314, 418, 593, 656
MalI	GATC	4 cut(s)	312, 433, 503, 1312
MboI	GATC	4 cut(s)	310, 431, 501, 1310
MboII	GAAGA	4 cut(s)	99, 441, 1120, 1255
MfeI	CAATTG	1 cut(s)	1296
MhlI	GDGCHC	1 cut(s)	464
MlsI	TGGCCA	2 cut(s)	735, 947
MluNI	TGGCCA	2 cut(s)	735, 947
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	2 cut(s)	142, 1090
MnlI	CCTC	8 cut(s)	105, 384, 419, 520, 758, 917, 1148, 1295
Mox20I	TGGCCA	2 cut(s)	735, 947
Mph1103I	ATGCAT	2 cut(s)	285, 340
MscI	TGGCCA	2 cut(s)	735, 947
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	3 cut(s)	155, 368, 833
Msp20I	TGGCCA	2 cut(s)	735, 947
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	2 cut(s)	423, 558
MspR9I	CCNGG	4 cut(s)	70, 216, 297, 1240
MunI	CAATTG	1 cut(s)	1296
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	4 cut(s)	70, 216, 297, 1240
MwoI	GCNNNNNNNGC	2 cut(s)	468, 614
NcoI	CCATGG	2 cut(s)	156, 192
NdeII	GATC	4 cut(s)	310, 431, 501, 1310
NlaIV	GGNNCC	5 cut(s)	25, 213, 294, 372, 798
NmuCI	GTSAC	2 cut(s)	148, 418
NsiI	ATGCAT	2 cut(s)	285, 340
NspI	RCATGY	2 cut(s)	338, 955
PaeI	GCATGC	1 cut(s)	338
PagI	TCATGA	1 cut(s)	498
PciI	ACATGT	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	1113, 1227
PflMI	CCANNNNNTGG	2 cut(s)	325, 609
PkrI	GCNGC	5 cut(s)	438, 574, 577, 619, 703
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	951
PshBI	ATTAAT	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	4 cut(s)	68, 214, 295, 1238
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	4 cut(s)	68, 214, 295, 1238
PspN4I	GGNNCC	5 cut(s)	25, 213, 294, 372, 798
PspPI	GGNCC	3 cut(s)	212, 232, 445
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	3 cut(s)	413, 798, 1026
RsaNI	GTAC	3 cut(s)	412, 797, 1025
RseI	CAYNNNNRTG	3 cut(s)	155, 368, 833
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	5 cut(s)	437, 573, 576, 618, 702
Sau3AI	GATC	4 cut(s)	310, 431, 501, 1310
Sau96I	GGNCC	3 cut(s)	212, 232, 445
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	4 cut(s)	70, 216, 297, 1240
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	2 cut(s)	270, 1269
SfcI	CTRYAG	1 cut(s)	437
SinI	GGWCC	3 cut(s)	212, 232, 445
SmiMI	CAYNNNNRTG	3 cut(s)	155, 368, 833
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SphI	GCATGC	1 cut(s)	338
SsiI	CCGC	2 cut(s)	573, 620
SspMI	CTAG	1 cut(s)	863
StyD4I	CCNGG	4 cut(s)	68, 214, 295, 1238
StyI	CCWWGG	4 cut(s)	156, 192, 792, 1141
TaaI	ACNGT	3 cut(s)	23, 457, 1024
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	110, 648, 750
TaqII	GACCGA	1 cut(s)	167
TatI	WGTACW	2 cut(s)	411, 1024
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	1113, 1227
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	3 cut(s)	460, 1008, 1138
TseFI	GTSAC	2 cut(s)	148, 418
TseI	GCWGC	4 cut(s)	436, 575, 617, 701
Tsp45I	GTSAC	2 cut(s)	148, 418
TspDTI	ATGAA	4 cut(s)	72, 228, 484, 1060
TspRI	CASTG	3 cut(s)	460, 1008, 1138
Van91I	CCANNNNNTGG	2 cut(s)	325, 609
VpaK11BI	GGWCC	3 cut(s)	212, 232, 445
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	5 cut(s)	33, 683, 886, 1042, 1340
XceI	RCATGY	2 cut(s)	338, 955
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	1 cut(s)	863
Zsp2I	ATGCAT	2 cut(s)	285, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.