Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

90167840 .. 90169863

Gene Structure 2024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG683000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGACGAAAAATTAGCCAAGGAAAAGGCAATTAATGAGTGGCTTCCAATTACTTCTTCAAGGAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTTACGGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCAGAGCTTGGATGGGGTCCTGGTATAGTTATTTTGGTCCTTTCATGGGTCATCACATTGTACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAGCATGCATTTGGTGAAAAGCTTGGTCTTTACATTGTGGTGCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAACATCGCTGCAGAAGGTCCATGACACTGTGTGCTCAGACTGCAAAAAGATCAAATTGACTTACTTCATCATGATCTTTGCCTCTGTTCACTTTGTGCTTTCCCACCTTCCCAACTTCCACTCCATCGCCGGCGTGTCTTTGGCTGCAGCTGCCATGTCCTTGAGTTACTCTACCATAGCATGGACTGCTGCGCTAGACAAGGGTGTGGTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACAGGAAAATTTTTCGACTTCTTAGCTGCATTGGGTGAAGTGGCTTTTGCTTATGCTGGCCATAATGTAGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCCATGTGGAAAGGAGTCATTTTTGCCTATATAATTGTGGCTTTGTGCTACTTCCCGGTTTCTCTGGTGGGATATTACATATATGGCAATTCACTTGAAGACAACATCCTCGTCACATTGGAAAGACCCAAATGGCTAATTGCAATGGCCAACATGTTTGTTGTCATCCATGTTATTGGAAGTTATCAGGTTTATGCAATGCCAGTGTTTGACATGATGGAAACTCTACTGATCTGCATCTTCTTTGGTGTTCTTTTGATGGTTCTATCACCAATTGGAGGGCTGAGATCAATCATAGTTAAAGCCAAGACCTATGAATTCTACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

358

Amino Acids

39.91

Weight (kDa)

6.79

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	22 - 327	4.2e-86	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	27 - 159	3.1e-10	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	745
AccB1I	GGYRCC	2 cut(s)	319, 745
AccB7I	CCANNNNNTGG	2 cut(s)	274, 558
AclI	AACGTT	1 cut(s)	253
AcoI	YGGCCR	3 cut(s)	102, 682, 894
AcsI	RAATTY	2 cut(s)	632, 1064
AdeI	CACNNNGTG	2 cut(s)	408, 472
AfaI	GTAC	3 cut(s)	206, 362, 747
AfiI	CCNNNNNNNGG	4 cut(s)	190, 274, 558, 1025
AflIII	ACRYGT	1 cut(s)	900
AgsI	TTSAA	3 cut(s)	60, 341, 845
AjnI	CCWGG	2 cut(s)	163, 244
AjuI	GAANNNNNNNTTGG	4 cut(s)	40, 72, 699, 731
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	5 cut(s)	116, 151, 301, 527, 650
AluI	AGCT	5 cut(s)	116, 151, 301, 527, 650
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	3 cut(s)	102, 682, 894
ApeKI	GCWGC	6 cut(s)	385, 521, 524, 527, 566, 650
ApoI	RAATTY	2 cut(s)	632, 1064
AseI	ATTAAT	1 cut(s)	33
Asp718I	GGTACC	1 cut(s)	745
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	3 cut(s)	161, 181, 394
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	4 cut(s)	305, 361, 671, 1008
AvaII	GGWCC	3 cut(s)	161, 181, 394
BaeI	ACNNNNGTAYC	2 cut(s)	737, 770
BalI	TGGCCA	2 cut(s)	684, 896
BanI	GGYRCC	2 cut(s)	319, 745
BbsI	GAAGAC	1 cut(s)	852
Bbv12I	GWGCWC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	6 cut(s)	372, 508, 514, 536, 553, 637
BccI	CCATC	5 cut(s)	150, 232, 509, 958, 1000
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	2 cut(s)	165, 246
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	3 cut(s)	386, 522, 624
BisI	GCNGC	6 cut(s)	386, 522, 525, 528, 567, 651
BlsI	GCNGC	6 cut(s)	387, 523, 526, 529, 568, 652
Bme1390I	CCNGG	3 cut(s)	165, 246, 803
Bme18I	GGWCC	3 cut(s)	161, 181, 394
BmgT120I	GGNCC	3 cut(s)	161, 181, 394
BmiI	GGNNCC	4 cut(s)	162, 243, 321, 747
BmrFI	CCNGG	3 cut(s)	165, 246, 803
BmsI	GCATC	2 cut(s)	219, 993
BpiI	GAAGAC	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	559
BpuMI	CCSGG	1 cut(s)	803
BsaBI	GATNNNNATC	1 cut(s)	983
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	5 cut(s)	18, 105, 141, 245, 741
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 482, 512
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 274, 558, 1025
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	950
Bse3DI	GCAATG	2 cut(s)	897, 951
Bse8I	GATNNNNATC	1 cut(s)	983
BseBI	CCWGG	2 cut(s)	165, 246
BseDI	CCNNGG	5 cut(s)	18, 105, 141, 245, 741
BseGI	GGATG	3 cut(s)	161, 852, 912
BseJI	GATNNNNATC	1 cut(s)	983
BseLI	CCNNNNNNNGG	4 cut(s)	190, 274, 558, 1025
BseMI	GCAATG	2 cut(s)	897, 951
BseMII	CTCAG	4 cut(s)	338, 426, 720, 1022
BseNI	ACTGG	1 cut(s)	950
BseXI	GCAGC	6 cut(s)	372, 508, 514, 536, 553, 637
BshFI	GGCC	3 cut(s)	104, 684, 896
BshNI	GGYRCC	2 cut(s)	319, 745
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	3 cut(s)	372, 507, 803
BslI	CCNNNNNNNGG	4 cut(s)	190, 274, 558, 1025
BsmAI	GTCTC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	104, 684, 896
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp1407I	TGTACA	2 cut(s)	204, 360
Bsp143I	GATC	5 cut(s)	259, 426, 450, 978, 1034
Bsp19I	CCATGG	2 cut(s)	105, 141
BspANI	GGCC	3 cut(s)	104, 684, 896
BspCNI	CTCAG	4 cut(s)	337, 425, 721, 1023
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	4 cut(s)	162, 243, 321, 747
BspMAI	CTGCAG	2 cut(s)	390, 526
BspT107I	GGYRCC	2 cut(s)	319, 745
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	897, 951
BsrFI	RCCGGY	1 cut(s)	506
BsrGI	TGTACA	2 cut(s)	204, 360
BsrI	ACTGG	1 cut(s)	950
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	5 cut(s)	18, 105, 141, 245, 741
BssMI	GATC	5 cut(s)	259, 426, 450, 978, 1034
BssT1I	CCWWGG	4 cut(s)	18, 105, 141, 741
Bst2UI	CCWGG	2 cut(s)	165, 246
Bst4CI	ACNGT	1 cut(s)	406
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstAUI	TGTACA	2 cut(s)	204, 360
BstC8I	GCNNGC	3 cut(s)	285, 508, 682
BstDEI	CTNAG	5 cut(s)	324, 412, 646, 729, 1031
BstDSI	CCRYGG	2 cut(s)	105, 141
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	161, 852, 912
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	5 cut(s)	262, 429, 453, 981, 1037
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	5 cut(s)	259, 426, 450, 978, 1034
BstMWI	GCNNNNNNNGC	3 cut(s)	417, 527, 563
BstNI	CCWGG	2 cut(s)	165, 246
BstNSI	RCATGY	2 cut(s)	287, 904
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	163, 244, 801
BstSFI	CTRYAG	3 cut(s)	386, 522, 624
BstV1I	GCAGC	6 cut(s)	372, 508, 514, 536, 553, 637
BstV2I	GAAGAC	1 cut(s)	852
BstXI	CCANNNNNNTGG	1 cut(s)	923
BsuRI	GGCC	3 cut(s)	104, 684, 896
BtgI	CCRYGG	2 cut(s)	105, 141
BtgZI	GCGATG	2 cut(s)	366, 487
BtsCI	GGATG	3 cut(s)	161, 852, 912
BtsIMutI	CAGTG	2 cut(s)	402, 957
Cac8I	GCNNGC	3 cut(s)	285, 508, 682
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	571
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	3 cut(s)	161, 181, 394
Csp6I	GTAC	3 cut(s)	205, 361, 746
CviQI	GTAC	3 cut(s)	205, 361, 746
DdeI	CTNAG	5 cut(s)	324, 412, 646, 729, 1031
DpnI	GATC	5 cut(s)	261, 428, 452, 980, 1036
DpnII	GATC	5 cut(s)	259, 426, 450, 978, 1034
DraIII	CACNNNGTG	2 cut(s)	408, 472
EaeI	YGGCCR	3 cut(s)	102, 682, 894
Eco130I	CCWWGG	4 cut(s)	18, 105, 141, 741
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	3 cut(s)	161, 181, 394
Eco91I	GGTNACC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	1064
EcoRII	CCWGG	2 cut(s)	163, 244
EcoT14I	CCWWGG	4 cut(s)	18, 105, 141, 741
EcoT22I	ATGCAT	2 cut(s)	234, 289
ErhI	CCWWGG	4 cut(s)	18, 105, 141, 741
Fnu4HI	GCNGC	6 cut(s)	386, 522, 525, 528, 567, 651
FokI	GGATG	3 cut(s)	168, 839, 899
Fsp4HI	GCNGC	6 cut(s)	386, 522, 525, 528, 567, 651
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	6 cut(s)	386, 522, 525, 528, 567, 651
HaeIII	GGCC	3 cut(s)	104, 684, 896
HapII	CCGG	3 cut(s)	372, 507, 803
HhaI	GCGC	1 cut(s)	571
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	1 cut(s)	762
HpaII	CCGG	3 cut(s)	372, 507, 803
HphI	GGTGA	4 cut(s)	305, 361, 671, 1008
Hpy166II	GTNNAC	3 cut(s)	207, 361, 466
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	3 cut(s)	207, 361, 466
HpyAV	CCTTC	4 cut(s)	385, 494, 729, 747
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	417, 527, 563
HpyF3I	CTNAG	5 cut(s)	324, 412, 646, 729, 1031
HpySE526I	ACGT	1 cut(s)	253
HspAI	GCGC	1 cut(s)	569
KpnI	GGTACC	1 cut(s)	749
KroI	GCCGGC	1 cut(s)	506
KroNI	GCCGGC	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	259, 426, 450, 978, 1034
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	6 cut(s)	372, 508, 514, 536, 553, 637
LweI	GCATC	2 cut(s)	219, 993
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	6 cut(s)	97, 263, 367, 542, 605, 859
MalI	GATC	5 cut(s)	261, 428, 452, 980, 1036
MboI	GATC	5 cut(s)	259, 426, 450, 978, 1034
MboII	GAAGA	3 cut(s)	48, 857, 979
MfeI	CAATTG	1 cut(s)	1020
MhlI	GDGCHC	1 cut(s)	413
MlsI	TGGCCA	2 cut(s)	684, 896
MluNI	TGGCCA	2 cut(s)	684, 896
MlyI	GAGTC	1 cut(s)	771
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	333, 368, 469, 707, 866, 1019
Mox20I	TGGCCA	2 cut(s)	684, 896
Mph1103I	ATGCAT	2 cut(s)	234, 289
MreI	CGCCGGCG	1 cut(s)	506
MroNI	GCCGGC	1 cut(s)	506
MscI	TGGCCA	2 cut(s)	684, 896
MseI	TTAA	2 cut(s)	33, 1047
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	2 cut(s)	684, 896
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	3 cut(s)	372, 507, 803
MspR9I	CCNGG	3 cut(s)	165, 246, 803
MunI	CAATTG	1 cut(s)	1020
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	2 cut(s)	165, 246
MwoI	GCNNNNNNNGC	3 cut(s)	417, 527, 563
NaeI	GCCGGC	1 cut(s)	508
NciI	CCSGG	1 cut(s)	803
NcoI	CCATGG	2 cut(s)	105, 141
NdeII	GATC	5 cut(s)	259, 426, 450, 978, 1034
NgoMIV	GCCGGC	1 cut(s)	506
NlaIV	GGNNCC	4 cut(s)	162, 243, 321, 747
NmuCI	GTSAC	2 cut(s)	367, 859
NsiI	ATGCAT	2 cut(s)	234, 289
NspI	RCATGY	2 cut(s)	287, 904
PaeI	GCATGC	1 cut(s)	287
PagI	TCATGA	1 cut(s)	447
PciI	ACATGT	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	1 cut(s)	70
PdiI	GCCGGC	1 cut(s)	508
PflMI	CCANNNNNTGG	2 cut(s)	274, 558
PkrI	GCNGC	6 cut(s)	387, 523, 526, 529, 568, 652
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
PpuMI	RGGWCCY	1 cut(s)	161
PscI	ACATGT	1 cut(s)	900
PshBI	ATTAAT	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	163, 244
PspEI	GGTNACC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	163, 244
PspN4I	GGNNCC	4 cut(s)	162, 243, 321, 747
PspPI	GGNCC	3 cut(s)	161, 181, 394
PspPPI	RGGWCCY	1 cut(s)	161
PstI	CTGCAG	2 cut(s)	390, 526
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	3 cut(s)	206, 362, 747
RsaNI	GTAC	3 cut(s)	205, 361, 746
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	33, 1047
SatI	GCNGC	6 cut(s)	386, 522, 525, 528, 567, 651
Sau3AI	GATC	5 cut(s)	259, 426, 450, 978, 1034
Sau96I	GGNCC	3 cut(s)	161, 181, 394
SchI	GAGTC	1 cut(s)	771
ScrFI	CCNGG	3 cut(s)	165, 246, 803
SduI	GDGCHC	1 cut(s)	413
SfaNI	GCATC	2 cut(s)	219, 993
SfcI	CTRYAG	3 cut(s)	386, 522, 624
SgrAI	CRCCGGYG	1 cut(s)	506
SinI	GGWCC	3 cut(s)	161, 181, 394
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
SphI	GCATGC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	163, 244, 801
StyI	CCWWGG	4 cut(s)	18, 105, 141, 741
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	597, 639, 699
TaqII	GACCGA	1 cut(s)	116
TatI	WGTACW	2 cut(s)	204, 360
Tru1I	TTAA	2 cut(s)	33, 1047
Tru9I	TTAA	2 cut(s)	33, 1047
TscAI	CASTG	2 cut(s)	409, 957
TseFI	GTSAC	2 cut(s)	367, 859
TseI	GCWGC	6 cut(s)	385, 521, 524, 527, 566, 650
Tsp45I	GTSAC	2 cut(s)	367, 859
TspDTI	ATGAA	3 cut(s)	177, 433, 1077
TspRI	CASTG	2 cut(s)	409, 957
Van91I	CCANNNNNTGG	2 cut(s)	274, 558
VpaK11BI	GGWCC	3 cut(s)	161, 181, 394
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	2 cut(s)	632, 1064
XceI	RCATGY	2 cut(s)	287, 904
XspI	CTAG	1 cut(s)	572
Zsp2I	ATGCAT	2 cut(s)	234, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.