Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

75500981 .. 75502151

Gene Structure 1171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0563500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGAGGCTGCTAGTGACTGCAGAGAGAAGAAGAGCTAGGAATTATTCCTGCTTTGATACCATGAAGGAAAAGATGTTTTGGCTGAATGAATCAATTGTATTCAATCATATAACATATATACAGAGCACCTACTATACATCTCGTGGTTCTCCAACAAACTGTCCTATCAAATCAAATCAAATCAACTTAATACAAATATATTCTTGCATATCAAGACAATCCCAATTCAATACTGCAAGATTTACTTTCCAACAAGGTCGTGGTGCTTTTGCGACAGTTTTCAAAGGAGTTTTAGCATGTGATAAAGGGAAGGTAGTTGCTGTAAAAAGATTGGACACAGTGGTTAGAGAAAATGACTGGGAATTCAAAGCTGAAGTAGGTGCAATTGGTGGAACAAATCACAGAAATTTAGTCAAACTACAAGGATTCTGCAACGAGGGGCAGCACCGAATTCTTGTGTATGAGTTCATGAGTAATGGCTCTCTAGCAAGCTTCCTCTTTGGAGAGGTGAGGCCAACGTGGTATCAAAGAAGGTTGATTGCCTTGGGAACTGCAAGAGGGCTCTTATATTTGCATGAGGAGTGTAGCAGCCAAATCATACATTGTGACATTAAGCCTCAGAACATTCTTCTAGATGACTCTTACACGGCAAGAATTGCTGACTTTGGAGTAGCCAAGCTTTTGAAAACAGACCAAACTCGAACAACGACTAGAATCAGGGGTACAAAAGGGTACGTGGCCCCAGAATGGTACAAAAGTTTGCCTGTCACAGTGAAAGCTGATGTTTACAGCTATGGTGTTTTGCTATTGGAGATTATTTTCTGCAGGAAGAATTTCGAGGCAGAGGCAGAGGATGATGATCAAATGATACTAGCTGATTGGGCATATAATTGCTATAAGCAACAGAAATTGCATCTGTTACTGCAGAATGATGATGATGAAGCGAAGGATGACATCAAAGCGGTGGAGAAGTCTGTGATGATTGCATTTTGGTGCATTCAGGAGGATCCATCAATGAGACCAACCATGAAGACTGTCACACAGATGCTTGAAGGAGTAGTTGAAGTGTCCGTCCCACAAAACCCGTCCTCATTGTATGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

369

Amino Acids

42.32

Weight (kDa)

8.23

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	87 - 349	8.5e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	87 - 351	4.2e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	965
AclWI	GGATC	2 cut(s)	1004, 1017
AcsI	RAATTY	4 cut(s)	365, 409, 453, 835
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	3 cut(s)	727, 737, 755
AfiI	CCNNNNNNNGG	1 cut(s)	750
AgsI	TTSAA	7 cut(s)	106, 232, 286, 370, 688, 1055, 1067
AluBI	AGCT	7 cut(s)	38, 374, 495, 682, 782, 795, 878
AluI	AGCT	7 cut(s)	38, 374, 495, 682, 782, 795, 878
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	1015
AlwI	GGATC	2 cut(s)	1004, 1017
AoxI	GGCC	2 cut(s)	515, 741
ApeKI	GCWGC	3 cut(s)	10, 445, 591
ApoI	RAATTY	4 cut(s)	365, 409, 453, 835
Asp700I	GAANNNNTTC	1 cut(s)	836
AspS9I	GGNCC	1 cut(s)	742
AsuHPI	GGTGA	1 cut(s)	523
BaeI	ACNNNNGTAYC	2 cut(s)	745, 778
BamHI	GGATCC	1 cut(s)	1009
BanII	GRGCYC	1 cut(s)	567
BauI	CACGAG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	1040
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	457, 603
BccI	CCATC	1 cut(s)	1021
BceAI	ACGGC	1 cut(s)	666
BclI	TGATCA	1 cut(s)	862
BcoDI	GTCTC	1 cut(s)	1015
BfaI	CTAG	6 cut(s)	14, 39, 488, 635, 714, 875
BfmI	CTRYAG	3 cut(s)	21, 826, 926
BisI	GCNGC	3 cut(s)	11, 446, 592
BlsI	GCNGC	3 cut(s)	12, 447, 593
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	2 cut(s)	744, 1011
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	2 cut(s)	925, 1038
BmuI	ACTGGG	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	1040
BsaAI	YACGTR	1 cut(s)	739
BsaBI	GATNNNNATC	1 cut(s)	861
BsaI	GGTCTC	1 cut(s)	1015
BsaJI	CCNNGG	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	1 cut(s)	750
Bse1I	ACTGG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	861
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	2 cut(s)	862, 958
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	1 cut(s)	750
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	2 cut(s)	457, 603
BshFI	GGCC	2 cut(s)	517, 743
BsiHKAI	GWGCWC	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	1061
BslI	CCNNNNNNNGG	1 cut(s)	750
BsmAI	GTCTC	1 cut(s)	1015
BsmFI	GGGAC	1 cut(s)	1061
BsmI	GAATGC	1 cut(s)	999
BsnI	GGCC	2 cut(s)	517, 743
Bso31I	GGTCTC	1 cut(s)	1015
Bsp1286I	GDGCHC	2 cut(s)	131, 567
Bsp143I	GATC	2 cut(s)	862, 1009
BspACI	CCGC	1 cut(s)	965
BspANI	GGCC	2 cut(s)	517, 743
BspCNI	CTCAG	1 cut(s)	634
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	744, 1011
BspMAI	CTGCAG	3 cut(s)	25, 830, 930
BspPI	GGATC	2 cut(s)	1004, 1017
BspQI	GCTCTTC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	1015
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	2 cut(s)	862, 1009
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	144
Bst4CI	ACNGT	5 cut(s)	164, 280, 343, 775, 1039
Bst6I	CTCTTC	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstBAI	YACGTR	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	1 cut(s)	621
BstF5I	GGATG	2 cut(s)	862, 958
BstKTI	GATC	2 cut(s)	865, 1012
BstMAI	GTCTC	1 cut(s)	1015
BstMBI	GATC	2 cut(s)	862, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 884
BstNSI	RCATGY	1 cut(s)	303
BstSFI	CTRYAG	3 cut(s)	21, 826, 926
BstV1I	GCAGC	2 cut(s)	457, 603
BstV2I	GAAGAC	1 cut(s)	1040
BstX2I	RGATCY	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	517, 743
BtsCI	GGATG	2 cut(s)	862, 958
BtsIMutI	CAGTG	2 cut(s)	348, 780
Cac8I	GCNNGC	1 cut(s)	493
CciI	TCATGA	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	742
Csp6I	GTAC	3 cut(s)	726, 736, 754
CviAII	CATG	5 cut(s)	64, 300, 472, 578, 1030
CviQI	GTAC	3 cut(s)	726, 736, 754
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	2 cut(s)	864, 1011
DpnII	GATC	2 cut(s)	862, 1009
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	1015
Eco57I	CTGAAG	1 cut(s)	396
EcoRI	GAATTC	2 cut(s)	365, 453
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	5 cut(s)	67, 303, 475, 581, 1033
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FaqI	GGGAC	1 cut(s)	1061
FatI	CATG	5 cut(s)	63, 299, 471, 577, 1029
FbaI	TGATCA	1 cut(s)	862
Fnu4HI	GCNGC	3 cut(s)	11, 446, 592
FokI	GGATG	2 cut(s)	869, 965
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	3 cut(s)	11, 446, 592
FspBI	CTAG	6 cut(s)	14, 39, 488, 635, 714, 875
GluI	GCNGC	3 cut(s)	11, 446, 592
HaeIII	GGCC	2 cut(s)	517, 743
Hin1II	CATG	5 cut(s)	67, 303, 475, 581, 1033
HindIII	AAGCTT	2 cut(s)	493, 680
HinfI	GANTC	4 cut(s)	92, 429, 641, 717
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	1 cut(s)	624
Hpy188III	TCNNGA	4 cut(s)	216, 472, 635, 1004
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	5 cut(s)	61, 307, 528, 943, 1049
HpyCH4III	ACNGT	5 cut(s)	164, 280, 343, 775, 1039
HpyCH4IV	ACGT	2 cut(s)	521, 738
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 884
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	2 cut(s)	521, 738
Hsp92II	CATG	5 cut(s)	67, 303, 475, 581, 1033
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	2 cut(s)	862, 1009
LguI	GCTCTTC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	64, 346, 706, 759, 780, 814, 989
Lsp1109I	GCAGC	2 cut(s)	457, 603
LweI	GCATC	2 cut(s)	925, 1038
MaeI	CTAG	6 cut(s)	14, 39, 488, 635, 714, 875
MaeII	ACGT	2 cut(s)	521, 738
MaeIII	GTNAC	5 cut(s)	16, 608, 769, 921, 1039
MalI	GATC	2 cut(s)	864, 1011
MboI	GATC	2 cut(s)	862, 1009
MboII	GAAGA	5 cut(s)	42, 45, 623, 844, 1045
MfeI	CAATTG	2 cut(s)	96, 387
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	2 cut(s)	131, 567
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	2 cut(s)	179, 277
MroXI	GAANNNNTTC	1 cut(s)	836
MseI	TTAA	3 cut(s)	191, 615, 1108
MslI	CAYNNNNRTG	2 cut(s)	994, 1046
MunI	CAATTG	2 cut(s)	96, 387
Mva1269I	GAATGC	1 cut(s)	999
MwoI	GCNNNNNNNGC	2 cut(s)	659, 884
NdeII	GATC	2 cut(s)	862, 1009
NlaIII	CATG	5 cut(s)	67, 303, 475, 581, 1033
NlaIV	GGNNCC	2 cut(s)	744, 1011
NmuCI	GTSAC	4 cut(s)	16, 608, 769, 1039
NspI	RCATGY	1 cut(s)	303
PagI	TCATGA	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	28
PctI	GAATGC	1 cut(s)	999
PdmI	GAANNNNTTC	1 cut(s)	836
PfeI	GAWTC	3 cut(s)	92, 429, 717
PkrI	GCNGC	3 cut(s)	12, 447, 593
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
Ppu21I	YACGTR	1 cut(s)	739
PspN4I	GGNNCC	2 cut(s)	744, 1011
PspPI	GGNCC	1 cut(s)	742
PstI	CTGCAG	3 cut(s)	25, 830, 930
PsuI	RGATCY	1 cut(s)	1009
RsaI	GTAC	3 cut(s)	727, 737, 755
RsaNI	GTAC	3 cut(s)	726, 736, 754
RseI	CAYNNNNRTG	2 cut(s)	994, 1046
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	3 cut(s)	191, 615, 1108
SatI	GCNGC	3 cut(s)	11, 446, 592
Sau3AI	GATC	2 cut(s)	862, 1009
Sau96I	GGNCC	1 cut(s)	742
SchI	GAGTC	1 cut(s)	635
SduI	GDGCHC	2 cut(s)	131, 567
SfaNI	GCATC	2 cut(s)	925, 1038
SfcI	CTRYAG	3 cut(s)	21, 826, 926
SmiMI	CAYNNNNRTG	2 cut(s)	994, 1046
SsiI	CCGC	1 cut(s)	965
SspMI	CTAG	6 cut(s)	14, 39, 488, 635, 714, 875
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	5 cut(s)	164, 280, 343, 775, 1039
TaiI	ACGT	2 cut(s)	524, 741
TaqI	TCGA	2 cut(s)	703, 840
TfiI	GAWTC	3 cut(s)	92, 429, 717
Tru1I	TTAA	3 cut(s)	191, 615, 1108
Tru9I	TTAA	3 cut(s)	191, 615, 1108
TscAI	CASTG	2 cut(s)	348, 780
TseFI	GTSAC	4 cut(s)	16, 608, 769, 1039
TseI	GCWGC	3 cut(s)	10, 445, 591
Tsp45I	GTSAC	4 cut(s)	16, 608, 769, 1039
TspDTI	ATGAA	5 cut(s)	80, 105, 460, 957, 1046
TspGWI	ACGGA	1 cut(s)	1063
TspRI	CASTG	2 cut(s)	348, 780
XapI	RAATTY	4 cut(s)	365, 409, 453, 835
XbaI	TCTAGA	1 cut(s)	634
XceI	RCATGY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	836
XspI	CTAG	6 cut(s)	14, 39, 488, 635, 714, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.