Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Reverse (-)

59676217 .. 59678211

Gene Structure 1995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGACGAAAAATTAGCCAAGGAAAAGGCAATCAATGAGTGGCTTCCAATTACATCTAAGAGAAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTTACGGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCTGAGCTTGGATGGGGTCCTGGTATAGCTATTTTGGTCTTTTCATGGGTCATCACATTATACACACTCTGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCGCGAATTGGGTCAGCATGCATTTGGTGAAAAGCTTGGTCTTTACATTGTGGTTCCTCAGCAACTCATTGTTGAAGTTGTCACCGGAGGAAAATCACTGCAGAAGGTCCATGACACTGCGTGCTCAGACTGCAAAAAGATCAAATTGACTTACTTCATTATGATCTTTGCCTCTGTTCACTTTGTGCTTTCCCTCCTTCCCAACTTCCACTCCATCTCCGGCGTGTCTTTGGCCGCAGCTGTCATGTCCTTGAGTTACTCTACCATAGCTTGGACTGCTGCGCTAGACAAGGGTGTGGTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACAGGAAAATTTTTCAACTTCTTAACTGCATTGGGTGAAGTGGCTTTTGCTTATGCTGGCCATAATGTAGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCCATGTGGAAAGGAGTCATTTTTGCCTATATAATTGTGGCCTTGTGCTACTTCCCAGTTTCTCTGGTGGGATATTACATATTTGGCAATTCACTTGATGACGACATCCTCATCACATTGGAAGGACCCAAATGGCTAATTGCAATGGCAAACATGTTTGTTGTTATCCATGTTATTGGAAGCTATCAGGTTTATGCAATGCCAGTGTTTGACATGATGGAAACTCTACAGGTAAAGAAGTGGGATTTCAGGCCAACTTTTAAGCTTCGCTTTATTACACGAACTTCATATGTTGCAATTACCATGTTTGTCGGAATCACATTCCCTTTCTTCAGTGGTCTCCTTGGATTTTTCGGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTAGCATAATGTGGCTTGCCATCTACAAACCAAAGAGATTTGGCTTATCCTGGTGGTGCAACTATATCTGCATCTTCTTTGGTGTTCTTTTGATGGTTTTATCACCAATTGGAGGGCTGAGATCAATCATAGTTCAAGCCAAGACCTACGAATTCTACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

426

Amino Acids

48.04

Weight (kDa)

9.01

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	22 - 410	1.1e-102	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	27 - 121	2.7e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	724
AccB1I	GGYRCC	1 cut(s)	724
AccB7I	CCANNNNNTGG	1 cut(s)	537
AccII	CGCG	1 cut(s)	270
AciI	CCGC	2 cut(s)	268, 501
AclI	AACGTT	1 cut(s)	253
AcoI	YGGCCR	3 cut(s)	102, 498, 661
AcsI	RAATTY	2 cut(s)	611, 1268
AcuI	CTGAAG	1 cut(s)	1042
AdeI	CACNNNGTG	2 cut(s)	387, 451
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	3 cut(s)	274, 537, 1229
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	3 cut(s)	341, 619, 1253
AjnI	CCWGG	3 cut(s)	163, 244, 1166
AjuI	GAANNNNNNNTTGG	2 cut(s)	678, 710
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	8 cut(s)	116, 151, 173, 301, 506, 536, 909, 991
AluI	AGCT	8 cut(s)	116, 151, 173, 301, 506, 536, 909, 991
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	2 cut(s)	134, 1070
AoxI	GGCC	5 cut(s)	102, 498, 661, 765, 977
ApeKI	GCWGC	2 cut(s)	503, 545
ApoI	RAATTY	2 cut(s)	611, 1268
Asp718I	GGTACC	1 cut(s)	724
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	3 cut(s)	161, 373, 851
AsuHPI	GGTGA	4 cut(s)	305, 340, 650, 1212
AvaII	GGWCC	3 cut(s)	161, 373, 851
BaeI	ACNNNNGTAYC	2 cut(s)	716, 749
BalI	TGGCCA	1 cut(s)	663
BanI	GGYRCC	1 cut(s)	724
Bbv12I	GWGCWC	1 cut(s)	392
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	515, 532
BccI	CCATC	6 cut(s)	150, 232, 488, 937, 1145, 1204
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	3 cut(s)	165, 246, 1168
BcoDI	GTCTC	2 cut(s)	134, 1070
BfaI	CTAG	2 cut(s)	551, 1119
BfmI	CTRYAG	3 cut(s)	365, 603, 953
BisI	GCNGC	3 cut(s)	501, 504, 546
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	3 cut(s)	502, 505, 547
Bme1390I	CCNGG	3 cut(s)	165, 246, 1168
Bme18I	GGWCC	3 cut(s)	161, 373, 851
BmgT120I	GGNCC	3 cut(s)	161, 373, 851
BmiI	GGNNCC	5 cut(s)	162, 243, 321, 726, 853
BmrFI	CCNGG	3 cut(s)	165, 246, 1168
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	2 cut(s)	219, 1197
BmuI	ACTGGG	1 cut(s)	776
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	538
BsaI	GGTCTC	2 cut(s)	134, 1070
BsaJI	CCNNGG	6 cut(s)	18, 105, 141, 245, 720, 1069
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	6 cut(s)	105, 135, 461, 467, 491, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 537, 1229
Bse1I	ACTGG	2 cut(s)	782, 929
Bse3DI	GCAATG	2 cut(s)	876, 930
BseBI	CCWGG	3 cut(s)	165, 246, 1168
BseDI	CCNNGG	6 cut(s)	18, 105, 141, 245, 720, 1069
BseGI	GGATG	2 cut(s)	161, 831
BseLI	CCNNNNNNNGG	3 cut(s)	274, 537, 1229
BseMI	GCAATG	2 cut(s)	876, 930
BseMII	CTCAG	5 cut(s)	138, 338, 405, 699, 1226
BseNI	ACTGG	2 cut(s)	782, 929
BseXI	GCAGC	2 cut(s)	515, 532
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	5 cut(s)	104, 500, 663, 767, 979
BshNI	GGYRCC	1 cut(s)	724
BsiHKAI	GWGCWC	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	351, 486
BslI	CCNNNNNNNGG	3 cut(s)	274, 537, 1229
BsmAI	GTCTC	2 cut(s)	134, 1070
BsnI	GGCC	5 cut(s)	104, 500, 663, 767, 979
Bso31I	GGTCTC	2 cut(s)	134, 1070
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	4 cut(s)	259, 405, 429, 1238
Bsp1720I	GCTNAGC	1 cut(s)	147
Bsp19I	CCATGG	2 cut(s)	105, 141
BspACI	CCGC	2 cut(s)	268, 501
BspANI	GGCC	5 cut(s)	104, 500, 663, 767, 979
BspCNI	CTCAG	5 cut(s)	139, 337, 404, 700, 1227
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	5 cut(s)	162, 243, 321, 726, 853
BspMAI	CTGCAG	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	724
BspTNI	GGTCTC	2 cut(s)	134, 1070
BsrDI	GCAATG	2 cut(s)	876, 930
BsrI	ACTGG	2 cut(s)	782, 929
BssECI	CCNNGG	6 cut(s)	18, 105, 141, 245, 720, 1069
BssMI	GATC	4 cut(s)	259, 405, 429, 1238
BssT1I	CCWWGG	5 cut(s)	18, 105, 141, 720, 1069
Bst2UI	CCWGG	3 cut(s)	165, 246, 1168
BstC8I	GCNNGC	4 cut(s)	285, 388, 661, 1134
BstDEI	CTNAG	6 cut(s)	57, 147, 324, 391, 708, 1235
BstDSI	CCRYGG	2 cut(s)	105, 141
BstF5I	GGATG	2 cut(s)	161, 831
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	4 cut(s)	262, 408, 432, 1241
BstMAI	GTCTC	2 cut(s)	134, 1070
BstMBI	GATC	4 cut(s)	259, 405, 429, 1238
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 542
BstNI	CCWGG	3 cut(s)	165, 246, 1168
BstNSI	RCATGY	2 cut(s)	287, 883
BstSCI	CCNGG	3 cut(s)	163, 244, 1166
BstSFI	CTRYAG	3 cut(s)	365, 603, 953
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	515, 532
BstXI	CCANNNNNNTGG	1 cut(s)	902
BsuRI	GGCC	5 cut(s)	104, 500, 663, 767, 979
BtgI	CCRYGG	2 cut(s)	105, 141
BtsCI	GGATG	2 cut(s)	161, 831
BtsI	GCAGTG	2 cut(s)	362, 381
BtsIMutI	CAGTG	4 cut(s)	362, 381, 936, 1066
Cac8I	GCNNGC	4 cut(s)	285, 388, 661, 1134
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	3 cut(s)	161, 373, 851
Csp6I	GTAC	1 cut(s)	725
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	6 cut(s)	57, 147, 324, 391, 708, 1235
DpnI	GATC	4 cut(s)	261, 407, 431, 1240
DpnII	GATC	4 cut(s)	259, 405, 429, 1238
DraIII	CACNNNGTG	2 cut(s)	387, 451
EaeI	YGGCCR	3 cut(s)	102, 498, 661
Eco130I	CCWWGG	5 cut(s)	18, 105, 141, 720, 1069
Eco31I	GGTCTC	2 cut(s)	134, 1070
Eco47I	GGWCC	3 cut(s)	161, 373, 851
Eco57I	CTGAAG	1 cut(s)	1042
EcoO109I	RGGNCCY	2 cut(s)	161, 851
EcoRI	GAATTC	1 cut(s)	1268
EcoRII	CCWGG	3 cut(s)	163, 244, 1166
EcoT14I	CCWWGG	5 cut(s)	18, 105, 141, 720, 1069
EcoT22I	ATGCAT	2 cut(s)	234, 289
ErhI	CCWWGG	5 cut(s)	18, 105, 141, 720, 1069
FalI	AAGNNNNNCTT	2 cut(s)	980, 1012
FauNDI	CATATG	1 cut(s)	1015
Fnu4HI	GCNGC	3 cut(s)	501, 504, 546
FokI	GGATG	2 cut(s)	168, 818
Fsp4HI	GCNGC	3 cut(s)	501, 504, 546
FspBI	CTAG	2 cut(s)	551, 1119
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	3 cut(s)	501, 504, 546
HaeIII	GGCC	5 cut(s)	104, 500, 663, 767, 979
HapII	CCGG	2 cut(s)	351, 486
HhaI	GCGC	1 cut(s)	550
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HindIII	AAGCTT	2 cut(s)	299, 989
HinfI	GANTC	2 cut(s)	741, 1041
HpaII	CCGG	2 cut(s)	351, 486
HphI	GGTGA	4 cut(s)	305, 340, 650, 1212
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	3 cut(s)	394, 1040, 1082
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	5 cut(s)	364, 473, 708, 726, 842
HpyCH4IV	ACGT	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 542
HpyF3I	CTNAG	6 cut(s)	57, 147, 324, 391, 708, 1235
HpySE526I	ACGT	1 cut(s)	253
HspAI	GCGC	1 cut(s)	548
KpnI	GGTACC	1 cut(s)	728
Kzo9I	GATC	4 cut(s)	259, 405, 429, 1238
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	2 cut(s)	515, 532
LweI	GCATC	2 cut(s)	219, 1197
MaeI	CTAG	2 cut(s)	551, 1119
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	5 cut(s)	97, 263, 346, 521, 584
MalI	GATC	4 cut(s)	261, 407, 431, 1240
MboI	GATC	4 cut(s)	259, 405, 429, 1238
MboII	GAAGA	2 cut(s)	1048, 1183
MfeI	CAATTG	1 cut(s)	1224
MhlI	GDGCHC	1 cut(s)	392
MlsI	TGGCCA	1 cut(s)	663
MluNI	TGGCCA	1 cut(s)	663
MlyI	GAGTC	1 cut(s)	750
MmeI	TCCRAC	2 cut(s)	91, 1018
MnlI	CCTC	8 cut(s)	333, 347, 448, 470, 686, 845, 1076, 1223
Mox20I	TGGCCA	1 cut(s)	663
Mph1103I	ATGCAT	2 cut(s)	234, 289
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	3 cut(s)	626, 987, 1279
Msp20I	TGGCCA	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	2 cut(s)	351, 486
MspR9I	CCNGG	3 cut(s)	165, 246, 1168
MunI	CAATTG	1 cut(s)	1224
MvaI	CCWGG	3 cut(s)	165, 246, 1168
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	396, 542
NcoI	CCATGG	2 cut(s)	105, 141
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	4 cut(s)	259, 405, 429, 1238
NlaIV	GGNNCC	5 cut(s)	162, 243, 321, 726, 853
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	2 cut(s)	234, 289
NspI	RCATGY	2 cut(s)	287, 883
PaeI	GCATGC	1 cut(s)	287
PciI	ACATGT	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	1041
PflMI	CCANNNNNTGG	1 cut(s)	537
PkrI	GCNGC	3 cut(s)	502, 505, 547
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
PpuMI	RGGWCCY	2 cut(s)	161, 851
PscI	ACATGT	1 cut(s)	879
Psp1406I	AACGTT	1 cut(s)	253
Psp5II	RGGWCCY	2 cut(s)	161, 851
Psp6I	CCWGG	3 cut(s)	163, 244, 1166
PspGI	CCWGG	3 cut(s)	163, 244, 1166
PspN4I	GGNNCC	5 cut(s)	162, 243, 321, 726, 853
PspPI	GGNCC	3 cut(s)	161, 373, 851
PspPPI	RGGWCCY	2 cut(s)	161, 851
PstI	CTGCAG	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
SaqAI	TTAA	3 cut(s)	626, 987, 1279
SatI	GCNGC	3 cut(s)	501, 504, 546
Sau3AI	GATC	4 cut(s)	259, 405, 429, 1238
Sau96I	GGNCC	3 cut(s)	161, 373, 851
SchI	GAGTC	1 cut(s)	750
ScrFI	CCNGG	3 cut(s)	165, 246, 1168
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	2 cut(s)	219, 1197
SfcI	CTRYAG	3 cut(s)	365, 603, 953
SinI	GGWCC	3 cut(s)	161, 373, 851
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
SphI	GCATGC	1 cut(s)	287
SsiI	CCGC	2 cut(s)	268, 501
SspMI	CTAG	2 cut(s)	551, 1119
StyD4I	CCNGG	3 cut(s)	163, 244, 1166
StyI	CCWWGG	5 cut(s)	18, 105, 141, 720, 1069
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	576, 678
TaqII	GACCGA	1 cut(s)	116
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	1041
Tru1I	TTAA	3 cut(s)	626, 987, 1279
Tru9I	TTAA	3 cut(s)	626, 987, 1279
TscAI	CASTG	4 cut(s)	369, 388, 936, 1066
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	503, 545
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	3 cut(s)	177, 412, 1002
TspRI	CASTG	4 cut(s)	369, 388, 936, 1066
Van91I	CCANNNNNTGG	1 cut(s)	537
VpaK11BI	GGWCC	3 cut(s)	161, 373, 851
XapI	RAATTY	2 cut(s)	611, 1268
XceI	RCATGY	2 cut(s)	287, 883
XspI	CTAG	2 cut(s)	551, 1119
Zsp2I	ATGCAT	2 cut(s)	234, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.