Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

87024804 .. 87030505

Gene Structure 5702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54162

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGAGAACTCAAACTCAAAACAACGCCGATAAAACTTACGACCAGACAGAGATGGACGAAAAATTAGCCAAGGAAAAGGCAATTAATGAGTGGCTTCCAATTACTTCTTCAAGGAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTTACGGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCAGAGCTTGGATGGGGTCCTGGTATAGTTATTTTGGTCCTTTCATGGGTCATCACATTGTACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAGCATGCATTTGGTGAAAAGCTTGGTCTTTACATTGTGGTGCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAACATCGCTGCAGAAGGTCCATGACACTGTGTGCTCAGACTGCAAAAAGATCAAATTGACTTACTTCATCATGATCTTTGCCTCTGTTCACTTTGTGCTTTCCCACCTTCCCAACTTCCACTCCATCGCCGGCGTGTCTTTGGCTGCAGCTGCCATGTCCTTGAGTTACTCTACCATAGCATGGACTGCTGCGCTAGACAAGGGTGTGGTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACAGGAAAATTTTTCGACTTCTTAGCTGCATTGGGTGCAGTGGCTTTTGCTTATGCTGGCCATAATGTAGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCCATGTGGAAAGGAGTCATTTTTGCCTATATAATTGTGGCTTTGTGCTACTTCCCGGTTTCTCTGGTGGGATATTACATATATGGCAATTCACTTGAAGACAACATCCTCGTCACATTGGAAAGACCCAAATGGCTAATTGCAATGGCCAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGGTTTATGCAATGCCAGTGTTTGACATGATGGAAACTCTACTGGTAAAGAAGTTGAATTTCAGGCCAACTTTTATGCTTCGCTTCATTACACGAACTTCATATGTTGCAATTACCATGTTTCTCGGAATTACATTCCCTTTCTTCAGTGGTCTCCTTGGATTTTTCGGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTGCATAATGTGGCTTGCCATCTACAAACCAAAGAGATTTGGCTTATCCTGGTGGTGTAACTATATCTGCATCTTCTTTGGTGTTCTTTTGATGGTTCTATCACCAATTGGAGGGCTGAGATCAATCATAGTTAAAGCCAAGACCTATGAATTCTACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

450

Amino Acids

50.72

Weight (kDa)

8.83

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 434	1.6e-110	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	44 - 178	9.1e-10	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	796
AccB1I	GGYRCC	2 cut(s)	370, 796
AccB7I	CCANNNNNTGG	2 cut(s)	325, 609
AclI	AACGTT	1 cut(s)	304
AcoI	YGGCCR	3 cut(s)	153, 733, 945
AcsI	RAATTY	3 cut(s)	683, 1042, 1340
AcuI	CTGAAG	1 cut(s)	1114
AdeI	CACNNNGTG	2 cut(s)	459, 523
AfaI	GTAC	3 cut(s)	257, 413, 798
AfiI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
AflIII	ACRYGT	1 cut(s)	951
AgsI	TTSAA	4 cut(s)	111, 392, 896, 1042
AjnI	CCWGG	3 cut(s)	214, 295, 1238
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 750, 782
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	6 cut(s)	167, 202, 352, 578, 701, 981
AluI	AGCT	6 cut(s)	167, 202, 352, 578, 701, 981
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	2 cut(s)	185, 1142
AoxI	GGCC	4 cut(s)	153, 733, 945, 1049
ApeKI	GCWGC	6 cut(s)	436, 572, 575, 578, 617, 701
ApoI	RAATTY	3 cut(s)	683, 1042, 1340
AseI	ATTAAT	1 cut(s)	84
Asp718I	GGTACC	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	3 cut(s)	212, 232, 445
AsuC2I	CCSGG	1 cut(s)	854
AsuHPI	GGTGA	3 cut(s)	356, 412, 1284
AvaII	GGWCC	3 cut(s)	212, 232, 445
BaeI	ACNNNNGTAYC	2 cut(s)	788, 821
BalI	TGGCCA	2 cut(s)	735, 947
BanI	GGYRCC	2 cut(s)	370, 796
BbsI	GAAGAC	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	6 cut(s)	423, 559, 565, 587, 604, 688
BccI	CCATC	7 cut(s)	46, 201, 283, 560, 1009, 1217, 1276
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	3 cut(s)	216, 297, 1240
BcnI	CCSGG	1 cut(s)	854
BcoDI	GTCTC	2 cut(s)	185, 1142
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	3 cut(s)	437, 573, 675
BisI	GCNGC	6 cut(s)	437, 573, 576, 579, 618, 702
BlsI	GCNGC	6 cut(s)	438, 574, 577, 580, 619, 703
Bme1390I	CCNGG	4 cut(s)	216, 297, 854, 1240
Bme18I	GGWCC	3 cut(s)	212, 232, 445
BmgT120I	GGNCC	3 cut(s)	212, 232, 445
BmiI	GGNNCC	4 cut(s)	213, 294, 372, 798
BmrFI	CCNGG	4 cut(s)	216, 297, 854, 1240
BmsI	GCATC	2 cut(s)	270, 1269
BpiI	GAAGAC	1 cut(s)	903
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	610
BpuMI	CCSGG	1 cut(s)	854
BsaI	GGTCTC	2 cut(s)	185, 1142
BsaJI	CCNNGG	6 cut(s)	69, 156, 192, 296, 792, 1141
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 533, 563
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	2 cut(s)	1001, 1032
Bse3DI	GCAATG	2 cut(s)	948, 1002
BseBI	CCWGG	3 cut(s)	216, 297, 1240
BseDI	CCNNGG	6 cut(s)	69, 156, 192, 296, 792, 1141
BseGI	GGATG	3 cut(s)	212, 903, 963
BseLI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
BseMI	GCAATG	2 cut(s)	948, 1002
BseMII	CTCAG	4 cut(s)	389, 477, 771, 1298
BseNI	ACTGG	2 cut(s)	1001, 1032
BseXI	GCAGC	6 cut(s)	423, 559, 565, 587, 604, 688
BsgI	GTGCAG	1 cut(s)	732
BshFI	GGCC	4 cut(s)	155, 735, 947, 1051
BshNI	GGYRCC	2 cut(s)	370, 796
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	3 cut(s)	423, 558, 854
BslI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
BsmAI	GTCTC	2 cut(s)	185, 1142
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	4 cut(s)	155, 735, 947, 1051
Bso31I	GGTCTC	2 cut(s)	185, 1142
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	2 cut(s)	255, 411
Bsp143I	GATC	4 cut(s)	310, 477, 501, 1310
Bsp19I	CCATGG	2 cut(s)	156, 192
BspANI	GGCC	4 cut(s)	155, 735, 947, 1051
BspCNI	CTCAG	4 cut(s)	388, 476, 772, 1299
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	213, 294, 372, 798
BspMAI	CTGCAG	2 cut(s)	441, 577
BspT107I	GGYRCC	2 cut(s)	370, 796
BspTNI	GGTCTC	2 cut(s)	185, 1142
BsrDI	GCAATG	2 cut(s)	948, 1002
BsrFI	RCCGGY	1 cut(s)	557
BsrGI	TGTACA	2 cut(s)	255, 411
BsrI	ACTGG	2 cut(s)	1001, 1032
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	6 cut(s)	69, 156, 192, 296, 792, 1141
BssMI	GATC	4 cut(s)	310, 477, 501, 1310
BssT1I	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
Bst2UI	CCWGG	3 cut(s)	216, 297, 1240
Bst4CI	ACNGT	1 cut(s)	457
BstAPI	GCANNNNNTGC	2 cut(s)	614, 710
BstAUI	TGTACA	2 cut(s)	255, 411
BstC8I	GCNNGC	4 cut(s)	336, 559, 733, 1206
BstDEI	CTNAG	5 cut(s)	375, 463, 697, 780, 1307
BstDSI	CCRYGG	2 cut(s)	156, 192
BstEII	GGTNACC	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	212, 903, 963
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	4 cut(s)	313, 480, 504, 1313
BstMAI	GTCTC	2 cut(s)	185, 1142
BstMBI	GATC	4 cut(s)	310, 477, 501, 1310
BstMWI	GCNNNNNNNGC	4 cut(s)	468, 578, 614, 710
BstNI	CCWGG	3 cut(s)	216, 297, 1240
BstNSI	RCATGY	2 cut(s)	338, 955
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	4 cut(s)	214, 295, 852, 1238
BstSFI	CTRYAG	3 cut(s)	437, 573, 675
BstV1I	GCAGC	6 cut(s)	423, 559, 565, 587, 604, 688
BstV2I	GAAGAC	1 cut(s)	903
BstXI	CCANNNNNNTGG	1 cut(s)	974
BsuRI	GGCC	4 cut(s)	155, 735, 947, 1051
BtgI	CCRYGG	2 cut(s)	156, 192
BtgZI	GCGATG	2 cut(s)	417, 538
BtsCI	GGATG	3 cut(s)	212, 903, 963
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	4 cut(s)	453, 720, 1008, 1138
Cac8I	GCNNGC	4 cut(s)	336, 559, 733, 1206
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	1 cut(s)	622
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	3 cut(s)	212, 232, 445
Csp6I	GTAC	3 cut(s)	256, 412, 797
CviQI	GTAC	3 cut(s)	256, 412, 797
DdeI	CTNAG	5 cut(s)	375, 463, 697, 780, 1307
DpnI	GATC	4 cut(s)	312, 479, 503, 1312
DpnII	GATC	4 cut(s)	310, 477, 501, 1310
DraIII	CACNNNGTG	2 cut(s)	459, 523
EaeI	YGGCCR	3 cut(s)	153, 733, 945
Eco130I	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
Eco31I	GGTCTC	2 cut(s)	185, 1142
Eco47I	GGWCC	3 cut(s)	212, 232, 445
Eco57I	CTGAAG	1 cut(s)	1114
Eco91I	GGTNACC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	418
EcoRI	GAATTC	1 cut(s)	1340
EcoRII	CCWGG	3 cut(s)	214, 295, 1238
EcoT14I	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
EcoT22I	ATGCAT	2 cut(s)	285, 340
ErhI	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
FauNDI	CATATG	1 cut(s)	1087
Fnu4HI	GCNGC	6 cut(s)	437, 573, 576, 579, 618, 702
FokI	GGATG	3 cut(s)	219, 890, 950
Fsp4HI	GCNGC	6 cut(s)	437, 573, 576, 579, 618, 702
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	6 cut(s)	437, 573, 576, 579, 618, 702
HaeIII	GGCC	4 cut(s)	155, 735, 947, 1051
HapII	CCGG	3 cut(s)	423, 558, 854
HhaI	GCGC	1 cut(s)	622
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	1 cut(s)	813
HpaII	CCGG	3 cut(s)	423, 558, 854
HphI	GGTGA	3 cut(s)	356, 412, 1284
Hpy166II	GTNNAC	3 cut(s)	258, 412, 517
Hpy188I	TCNGA	3 cut(s)	466, 1112, 1154
Hpy188III	TCNNGA	1 cut(s)	499
Hpy8I	GTNNAC	3 cut(s)	258, 412, 517
HpyAV	CCTTC	4 cut(s)	436, 545, 780, 798
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	4 cut(s)	468, 578, 614, 710
HpyF3I	CTNAG	5 cut(s)	375, 463, 697, 780, 1307
HpySE526I	ACGT	1 cut(s)	304
HspAI	GCGC	1 cut(s)	620
KpnI	GGTACC	1 cut(s)	800
KroI	GCCGGC	1 cut(s)	557
KroNI	GCCGGC	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	310, 477, 501, 1310
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	6 cut(s)	423, 559, 565, 587, 604, 688
LweI	GCATC	2 cut(s)	270, 1269
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	7 cut(s)	148, 314, 418, 593, 656, 910, 1247
MalI	GATC	4 cut(s)	312, 479, 503, 1312
MboI	GATC	4 cut(s)	310, 477, 501, 1310
MboII	GAAGA	4 cut(s)	99, 908, 1120, 1255
MfeI	CAATTG	1 cut(s)	1296
MhlI	GDGCHC	1 cut(s)	464
MlsI	TGGCCA	2 cut(s)	735, 947
MluNI	TGGCCA	2 cut(s)	735, 947
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	7 cut(s)	384, 419, 520, 758, 917, 1148, 1295
Mox20I	TGGCCA	2 cut(s)	735, 947
Mph1103I	ATGCAT	2 cut(s)	285, 340
MreI	CGCCGGCG	1 cut(s)	557
MroNI	GCCGGC	1 cut(s)	557
MscI	TGGCCA	2 cut(s)	735, 947
MseI	TTAA	2 cut(s)	84, 1323
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	2 cut(s)	735, 947
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	3 cut(s)	423, 558, 854
MspR9I	CCNGG	4 cut(s)	216, 297, 854, 1240
MunI	CAATTG	1 cut(s)	1296
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	3 cut(s)	216, 297, 1240
MwoI	GCNNNNNNNGC	4 cut(s)	468, 578, 614, 710
NaeI	GCCGGC	1 cut(s)	559
NciI	CCSGG	1 cut(s)	854
NcoI	CCATGG	2 cut(s)	156, 192
NdeI	CATATG	1 cut(s)	1087
NdeII	GATC	4 cut(s)	310, 477, 501, 1310
NgoMIV	GCCGGC	1 cut(s)	557
NlaIV	GGNNCC	4 cut(s)	213, 294, 372, 798
NmuCI	GTSAC	2 cut(s)	418, 910
NsiI	ATGCAT	2 cut(s)	285, 340
NspI	RCATGY	2 cut(s)	338, 955
PaeI	GCATGC	1 cut(s)	338
PagI	TCATGA	1 cut(s)	498
PciI	ACATGT	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	121
PdiI	GCCGGC	1 cut(s)	559
PflMI	CCANNNNNTGG	2 cut(s)	325, 609
PkrI	GCNGC	6 cut(s)	438, 574, 577, 580, 619, 703
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	951
PshBI	ATTAAT	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	3 cut(s)	214, 295, 1238
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	3 cut(s)	214, 295, 1238
PspN4I	GGNNCC	4 cut(s)	213, 294, 372, 798
PspPI	GGNCC	3 cut(s)	212, 232, 445
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	2 cut(s)	441, 577
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	3 cut(s)	257, 413, 798
RsaNI	GTAC	3 cut(s)	256, 412, 797
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	84, 1323
SatI	GCNGC	6 cut(s)	437, 573, 576, 579, 618, 702
Sau3AI	GATC	4 cut(s)	310, 477, 501, 1310
Sau96I	GGNCC	3 cut(s)	212, 232, 445
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	4 cut(s)	216, 297, 854, 1240
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	2 cut(s)	270, 1269
SfcI	CTRYAG	3 cut(s)	437, 573, 675
SgrAI	CRCCGGYG	1 cut(s)	557
SinI	GGWCC	3 cut(s)	212, 232, 445
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SphI	GCATGC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	4 cut(s)	214, 295, 852, 1238
StyI	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	648, 690, 750
TaqII	GACCGA	1 cut(s)	167
TatI	WGTACW	2 cut(s)	255, 411
Tru1I	TTAA	2 cut(s)	84, 1323
Tru9I	TTAA	2 cut(s)	84, 1323
TscAI	CASTG	4 cut(s)	460, 720, 1008, 1138
TseFI	GTSAC	2 cut(s)	418, 910
TseI	GCWGC	6 cut(s)	436, 572, 575, 578, 617, 701
Tsp45I	GTSAC	2 cut(s)	418, 910
TspDTI	ATGAA	5 cut(s)	228, 484, 1060, 1074, 1353
TspRI	CASTG	4 cut(s)	460, 720, 1008, 1138
Van91I	CCANNNNNTGG	2 cut(s)	325, 609
VpaK11BI	GGWCC	3 cut(s)	212, 232, 445
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	3 cut(s)	683, 1042, 1340
XceI	RCATGY	2 cut(s)	338, 955
XspI	CTAG	1 cut(s)	623
Zsp2I	ATGCAT	2 cut(s)	285, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.