Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Reverse (-)

57453998 .. 57457293

Gene Structure 3296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014785

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGGAACTCGAACTCAGAACGGTGCCGATAAAACTTACGACCAGACAGAGATGGACGAAAAATTAGCCAAGGAAAAGGCAATCAATGAGTGGCTTCCAATTACTTCTAAGAGAAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTTACAGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCTGAGCTTGGATGGGGTCCTGGTATAGCTATTTTGGTCCTTTCATGGGTCATCACATTGTACACCCTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAGCATGCATTTGGTGAAAAGCTTGGTCTTTACATTGTGGTTCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTCTACATGGTCACCGGAGGAAAATCGCTGCAGAAGGTCCATGACACTGCGTGCTCAGACTGCAAAAAGATCAAATTGACTTACTTCATTATGATCTTTGCCTCTGTTCACTTTGTGCTTTCCCTCCTTCCCAACTTCCACTCCATCTCCGGCGTGTCTTTGGCCGCAGCTGTCATGTCCTTGAGTTACTCTACCATAGCATGGACTGCTTCGCTAGACAAGGGTGTGGTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACAGGAAAATTTTTCAACTTCTTAGCTGCATTGGGTTCTGTGGCTTTTGCGTATGCTGGCCATAATGTAGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCCATGTGGAGAGGAGTCATTTTTGCCTATATAATTGTGGCCTTGTGCTACTTCCCAGTTTCTCTGGTGGGATATTACATATTTGGCAATGCACTTGATGACGACATCCTCATCACATTGGAAAGACCCAAATGGCTAATTGCAATGGCAAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGGTTTATGCAATGCCAGTGTTTGACATGATGGAAACTCTACTGGTAAAGAAGTGGGATTTCAGGCCAACTTTTAAGCTTCGCTTCATTACACGAACTTCATATGTTGCAATTACCATGTTTGTCGGAATCACATTCCCTTTCTTCAGTGGTCTCCTTGGATTTTTCGGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTGCATAATGTGGCTCGCCATCTACAAACCAAAGAGATTCGGCTTATCCTGGTGGTGCAACTATATCTGCATCTTCTTTGGTGTTCTTTTGATGGTTCTATCACCAATTGGGGGGCTGAGATTAATCATAGTTCAAGCCAAGACCTACGAATTCTACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

451

Amino Acids

50.73

Weight (kDa)

8.92

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 434	6e-111	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	44 - 175	1.3e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	796
AccB1I	GGYRCC	2 cut(s)	23, 796
AccB7I	CCANNNNNTGG	2 cut(s)	325, 609
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	1 cut(s)	573
AclI	AACGTT	1 cut(s)	304
AcoI	YGGCCR	2 cut(s)	570, 733
AcsI	RAATTY	2 cut(s)	683, 1340
AcuI	CTGAAG	1 cut(s)	1114
AdeI	CACNNNGTG	2 cut(s)	459, 523
AfaI	GTAC	2 cut(s)	257, 798
AfiI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
AflIII	ACRYGT	1 cut(s)	951
AgsI	TTSAA	3 cut(s)	392, 691, 1325
AjnI	CCWGG	3 cut(s)	214, 295, 1238
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	8 cut(s)	167, 202, 224, 352, 578, 701, 981, 1063
AluI	AGCT	8 cut(s)	167, 202, 224, 352, 578, 701, 981, 1063
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	2 cut(s)	185, 1142
AoxI	GGCC	4 cut(s)	570, 733, 837, 1049
ApeKI	GCWGC	3 cut(s)	436, 575, 701
ApoI	RAATTY	2 cut(s)	683, 1340
AseI	ATTAAT	1 cut(s)	1313
Asp718I	GGTACC	1 cut(s)	796
AspS9I	GGNCC	3 cut(s)	212, 232, 445
AsuHPI	GGTGA	3 cut(s)	356, 412, 1284
AvaII	GGWCC	3 cut(s)	212, 232, 445
BaeI	ACNNNNGTAYC	2 cut(s)	788, 821
BalI	TGGCCA	1 cut(s)	735
BanI	GGYRCC	2 cut(s)	23, 796
Bbv12I	GWGCWC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	423, 587, 688
BccI	CCATC	7 cut(s)	46, 201, 283, 560, 1009, 1217, 1276
BciT130I	CCWGG	3 cut(s)	216, 297, 1240
BcoDI	GTCTC	2 cut(s)	185, 1142
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	2 cut(s)	437, 675
BisI	GCNGC	4 cut(s)	437, 573, 576, 702
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	4 cut(s)	438, 574, 577, 703
Bme1390I	CCNGG	3 cut(s)	216, 297, 1240
Bme18I	GGWCC	3 cut(s)	212, 232, 445
BmgT120I	GGNCC	3 cut(s)	212, 232, 445
BmiI	GGNNCC	5 cut(s)	25, 213, 294, 372, 798
BmrFI	CCNGG	3 cut(s)	216, 297, 1240
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	2 cut(s)	270, 1269
BmuI	ACTGGG	1 cut(s)	848
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	610
BsaI	GGTCTC	2 cut(s)	185, 1142
BsaJI	CCNNGG	6 cut(s)	69, 156, 192, 296, 792, 1141
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	6 cut(s)	156, 186, 533, 539, 563, 569
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
Bse1I	ACTGG	3 cut(s)	854, 1001, 1032
Bse3DI	GCAATG	3 cut(s)	892, 948, 1002
BseBI	CCWGG	3 cut(s)	216, 297, 1240
BseDI	CCNNGG	6 cut(s)	69, 156, 192, 296, 792, 1141
BseGI	GGATG	3 cut(s)	212, 903, 963
BseLI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
BseMI	GCAATG	3 cut(s)	892, 948, 1002
BseMII	CTCAG	6 cut(s)	29, 189, 389, 477, 771, 1298
BseNI	ACTGG	3 cut(s)	854, 1001, 1032
BseRI	GAGGAG	1 cut(s)	825
BseXI	GCAGC	3 cut(s)	423, 587, 688
BshFI	GGCC	4 cut(s)	572, 735, 839, 1051
BshNI	GGYRCC	2 cut(s)	23, 796
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	423, 558
BslI	CCNNNNNNNGG	4 cut(s)	241, 325, 609, 1301
BsmAI	GTCTC	2 cut(s)	185, 1142
BsnI	GGCC	4 cut(s)	572, 735, 839, 1051
Bso31I	GGTCTC	2 cut(s)	185, 1142
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	310, 477, 501
Bsp1720I	GCTNAGC	1 cut(s)	198
Bsp19I	CCATGG	2 cut(s)	156, 192
BspACI	CCGC	1 cut(s)	573
BspANI	GGCC	4 cut(s)	572, 735, 839, 1051
BspCNI	CTCAG	6 cut(s)	28, 190, 388, 476, 772, 1299
BspLI	GGNNCC	5 cut(s)	25, 213, 294, 372, 798
BspMAI	CTGCAG	1 cut(s)	441
BspT107I	GGYRCC	2 cut(s)	23, 796
BspTNI	GGTCTC	2 cut(s)	185, 1142
BsrDI	GCAATG	3 cut(s)	892, 948, 1002
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	854, 1001, 1032
BssECI	CCNNGG	6 cut(s)	69, 156, 192, 296, 792, 1141
BssMI	GATC	3 cut(s)	310, 477, 501
BssT1I	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
Bst2UI	CCWGG	3 cut(s)	216, 297, 1240
Bst4CI	ACNGT	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	336, 460, 733, 1206
BstDEI	CTNAG	8 cut(s)	15, 108, 198, 375, 463, 697, 780, 1307
BstDSI	CCRYGG	2 cut(s)	156, 192
BstEII	GGTNACC	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	212, 903, 963
BstKTI	GATC	3 cut(s)	313, 480, 504
BstMAI	GTCTC	2 cut(s)	185, 1142
BstMBI	GATC	3 cut(s)	310, 477, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	468, 614
BstNI	CCWGG	3 cut(s)	216, 297, 1240
BstNSI	RCATGY	2 cut(s)	338, 955
BstPI	GGTNACC	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	214, 295, 1238
BstSFI	CTRYAG	2 cut(s)	437, 675
BstV1I	GCAGC	3 cut(s)	423, 587, 688
BstXI	CCANNNNNNTGG	1 cut(s)	974
BsuRI	GGCC	4 cut(s)	572, 735, 839, 1051
BtgI	CCRYGG	2 cut(s)	156, 192
BtsCI	GGATG	3 cut(s)	212, 903, 963
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	3 cut(s)	453, 1008, 1138
Cac8I	GCNNGC	4 cut(s)	336, 460, 733, 1206
Cfr13I	GGNCC	3 cut(s)	212, 232, 445
Csp6I	GTAC	2 cut(s)	256, 797
CviQI	GTAC	2 cut(s)	256, 797
DdeI	CTNAG	8 cut(s)	15, 108, 198, 375, 463, 697, 780, 1307
DpnI	GATC	3 cut(s)	312, 479, 503
DpnII	GATC	3 cut(s)	310, 477, 501
DraIII	CACNNNGTG	2 cut(s)	459, 523
EaeI	YGGCCR	2 cut(s)	570, 733
Eco130I	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
Eco31I	GGTCTC	2 cut(s)	185, 1142
Eco47I	GGWCC	3 cut(s)	212, 232, 445
Eco57I	CTGAAG	1 cut(s)	1114
Eco91I	GGTNACC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	418
EcoRI	GAATTC	1 cut(s)	1340
EcoRII	CCWGG	3 cut(s)	214, 295, 1238
EcoT14I	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
EcoT22I	ATGCAT	2 cut(s)	285, 340
ErhI	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
FalI	AAGNNNNNCTT	2 cut(s)	1052, 1084
FauNDI	CATATG	1 cut(s)	1087
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	437, 573, 576, 702
FokI	GGATG	3 cut(s)	219, 890, 950
Fsp4HI	GCNGC	4 cut(s)	437, 573, 576, 702
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	4 cut(s)	437, 573, 576, 702
HaeIII	GGCC	4 cut(s)	572, 735, 839, 1051
HapII	CCGG	2 cut(s)	423, 558
HindIII	AAGCTT	2 cut(s)	350, 1061
HinfI	GANTC	3 cut(s)	813, 1113, 1227
HpaII	CCGG	2 cut(s)	423, 558
HphI	GGTGA	3 cut(s)	356, 412, 1284
Hpy166II	GTNNAC	3 cut(s)	258, 412, 517
Hpy188I	TCNGA	4 cut(s)	18, 466, 1112, 1154
Hpy8I	GTNNAC	3 cut(s)	258, 412, 517
HpyAV	CCTTC	4 cut(s)	436, 545, 780, 798
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	468, 614
HpyF3I	CTNAG	8 cut(s)	15, 108, 198, 375, 463, 697, 780, 1307
HpySE526I	ACGT	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	800
Kzo9I	GATC	3 cut(s)	310, 477, 501
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	3 cut(s)	423, 587, 688
LweI	GCATC	2 cut(s)	270, 1269
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	5 cut(s)	148, 314, 418, 593, 656
MalI	GATC	3 cut(s)	312, 479, 503
MboI	GATC	3 cut(s)	310, 477, 501
MboII	GAAGA	2 cut(s)	1120, 1255
MfeI	CAATTG	1 cut(s)	1296
MhlI	GDGCHC	1 cut(s)	464
MlsI	TGGCCA	1 cut(s)	735
MluNI	TGGCCA	1 cut(s)	735
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	2 cut(s)	142, 1090
MnlI	CCTC	8 cut(s)	384, 419, 520, 542, 758, 803, 917, 1148
Mox20I	TGGCCA	1 cut(s)	735
Mph1103I	ATGCAT	2 cut(s)	285, 340
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	3 cut(s)	1059, 1313, 1351
Msp20I	TGGCCA	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	2 cut(s)	423, 558
MspR9I	CCNGG	3 cut(s)	216, 297, 1240
MunI	CAATTG	1 cut(s)	1296
MvaI	CCWGG	3 cut(s)	216, 297, 1240
MwoI	GCNNNNNNNGC	2 cut(s)	468, 614
NcoI	CCATGG	2 cut(s)	156, 192
NdeI	CATATG	1 cut(s)	1087
NdeII	GATC	3 cut(s)	310, 477, 501
NlaIV	GGNNCC	5 cut(s)	25, 213, 294, 372, 798
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	2 cut(s)	285, 340
NspI	RCATGY	2 cut(s)	338, 955
PaeI	GCATGC	1 cut(s)	338
PciI	ACATGT	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	1113, 1227
PflMI	CCANNNNNTGG	2 cut(s)	325, 609
PkrI	GCNGC	4 cut(s)	438, 574, 577, 703
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	951
PshBI	ATTAAT	1 cut(s)	1313
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	3 cut(s)	214, 295, 1238
PspEI	GGTNACC	1 cut(s)	418
PspGI	CCWGG	3 cut(s)	214, 295, 1238
PspN4I	GGNNCC	5 cut(s)	25, 213, 294, 372, 798
PspPI	GGNCC	3 cut(s)	212, 232, 445
PspPPI	RGGWCCY	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	2 cut(s)	257, 798
RsaNI	GTAC	2 cut(s)	256, 797
SaqAI	TTAA	3 cut(s)	1059, 1313, 1351
SatI	GCNGC	4 cut(s)	437, 573, 576, 702
Sau3AI	GATC	3 cut(s)	310, 477, 501
Sau96I	GGNCC	3 cut(s)	212, 232, 445
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	3 cut(s)	216, 297, 1240
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	2 cut(s)	270, 1269
SfcI	CTRYAG	2 cut(s)	437, 675
SinI	GGWCC	3 cut(s)	212, 232, 445
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SphI	GCATGC	1 cut(s)	338
SsiI	CCGC	1 cut(s)	573
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	3 cut(s)	214, 295, 1238
StyI	CCWWGG	5 cut(s)	69, 156, 192, 792, 1141
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	10, 648, 750
TaqII	GACCGA	1 cut(s)	167
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	1113, 1227
Tru1I	TTAA	3 cut(s)	1059, 1313, 1351
Tru9I	TTAA	3 cut(s)	1059, 1313, 1351
TscAI	CASTG	3 cut(s)	460, 1008, 1138
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	3 cut(s)	436, 575, 701
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	4 cut(s)	228, 484, 1060, 1074
TspRI	CASTG	3 cut(s)	460, 1008, 1138
Van91I	CCANNNNNTGG	2 cut(s)	325, 609
VpaK11BI	GGWCC	3 cut(s)	212, 232, 445
VspI	ATTAAT	1 cut(s)	1313
XapI	RAATTY	2 cut(s)	683, 1340
XceI	RCATGY	2 cut(s)	338, 955
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	1 cut(s)	623
Zsp2I	ATGCAT	2 cut(s)	285, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.