Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

80422121 .. 80426691

Gene Structure 4571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG632000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGATGAAAAATTAGCCAGGGAAAAGGCAATTAATGATTGGCTTCCAATTACTTCTTCGAGGAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTTACGGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCAGAGCTTGGATGGGGTCCTGGTATAGCTATTTTGGTCCTTTCATGGGTCATCACATTATACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAGCATGCATTTGGTGAAAAACTTGGTCTTTACATTGTGGTGCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAAGATCGCTGCAGAAGGTCCATGACACTGTGTGCTCAGACTGCAAAAAAATCAAATTGACTTACTTCATCATGATCTTTGCCTCTGTTCACTTTGTGCTTTCCCACCTTCCCAACTTCAACTCCATCTCCGGCGTGTCTTTGGCCGCAGCTGTCATGTCCTTGAGTTACTCTACCATAGCATGGACTGCTGCGCTAGACAAGGGTGTGGTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACAGGAAATTTTTTCAACTTCTTAGCTGCATTGGGTGAAGTGGCTTTTGCGTATGCTGGCCATAATGTGGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCTATGTGGAAAGGAGTCATTGTTGCCTACATAATTGTGGCTTTGTGCTACTTCCCAGTTGCTCTAGTAGGATATTACATATTTGGAAATAAAGTTGAAGACAACATCCTCGTCTCATTGGAAAAACCCAAATGGCTAATTGCAATGGCCAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGATTTATGCAATGCCAGTGTTTGACATGATGGAAACTGTACTGGTAAAGAAGTTGAATTTCAGGCCAACTTTTATGCTTCGCTTCGTTACACGAACTTTATATGTTGCAATTACCATGTTTGTTGGAATCACATTCCCTTTCTTCAGTGGTCTCCTTGGATTTTTTGGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTGTGTAATGTGGCTTGCCGTCTACAAACCAAAGAGATTCGGCTTATCCTGGTGGTGCAACTATATCTGCATCTTCTTTGGTGTTCTTTTGATGGTTCTGTCACCAATTGGAGGGCTGAGATCAATCATCGTTCAAGCCAAGACCTACAAATTCTACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

433

Amino Acids

48.67

Weight (kDa)

9.09

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	22 - 417	5.8e-115	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	27 - 161	8.5e-10	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	745
AccB1I	GGYRCC	2 cut(s)	319, 745
AccB7I	CCANNNNNTGG	3 cut(s)	274, 558, 691
AccI	GTMKAC	1 cut(s)	1161
AciI	CCGC	1 cut(s)	522
AclI	AACGTT	1 cut(s)	253
AcoI	YGGCCR	4 cut(s)	102, 519, 682, 894
AcsI	RAATTY	3 cut(s)	631, 991, 1289
AcuI	CTGAAG	1 cut(s)	1063
AdeI	CACNNNGTG	2 cut(s)	408, 472
AfaI	GTAC	3 cut(s)	362, 747, 975
AfiI	CCNNNNNNNGG	5 cut(s)	190, 274, 558, 691, 1250
AflIII	ACRYGT	1 cut(s)	900
AgsI	TTSAA	6 cut(s)	341, 496, 640, 845, 991, 1274
AjnI	CCWGG	4 cut(s)	17, 163, 244, 1187
AjuI	GAANNNNNNNTTGG	4 cut(s)	40, 72, 699, 731
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	6 cut(s)	116, 151, 173, 527, 650, 930
AluI	AGCT	6 cut(s)	116, 151, 173, 527, 650, 930
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	3 cut(s)	134, 865, 1091
AoxI	GGCC	5 cut(s)	102, 519, 682, 894, 998
ApeKI	GCWGC	4 cut(s)	385, 524, 566, 650
ApoI	RAATTY	3 cut(s)	631, 991, 1289
AseI	ATTAAT	1 cut(s)	33
Asp718I	GGTACC	1 cut(s)	745
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	4 cut(s)	161, 181, 394, 694
AsuHPI	GGTGA	4 cut(s)	305, 361, 671, 1233
AvaII	GGWCC	4 cut(s)	161, 181, 394, 694
BaeI	ACNNNNGTAYC	2 cut(s)	737, 770
BalI	TGGCCA	2 cut(s)	684, 896
BanI	GGYRCC	2 cut(s)	319, 745
BbsI	GAAGAC	1 cut(s)	852
Bbv12I	GWGCWC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	4 cut(s)	372, 536, 553, 637
BccI	CCATC	5 cut(s)	150, 232, 509, 958, 1225
BceAI	ACGGC	2 cut(s)	117, 1142
BciT130I	CCWGG	4 cut(s)	19, 165, 246, 1189
BcoDI	GTCTC	3 cut(s)	134, 865, 1091
BfaI	CTAG	2 cut(s)	572, 812
BfmI	CTRYAG	2 cut(s)	386, 624
BisI	GCNGC	5 cut(s)	386, 522, 525, 567, 651
BlsI	GCNGC	5 cut(s)	387, 523, 526, 568, 652
Bme1390I	CCNGG	4 cut(s)	19, 165, 246, 1189
Bme18I	GGWCC	4 cut(s)	161, 181, 394, 694
BmgT120I	GGNCC	4 cut(s)	161, 181, 394, 694
BmiI	GGNNCC	4 cut(s)	162, 243, 321, 747
BmrFI	CCNGG	4 cut(s)	19, 165, 246, 1189
BmrI	ACTGGG	1 cut(s)	797
BmsI	GCATC	2 cut(s)	219, 1218
BmuI	ACTGGG	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	559
BsaI	GGTCTC	2 cut(s)	134, 1091
BsaJI	CCNNGG	6 cut(s)	18, 105, 141, 245, 741, 1090
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	8 cut(s)	105, 135, 482, 488, 512, 518, 753, 783
Bsc4I	CCNNNNNNNGG	5 cut(s)	190, 274, 558, 691, 1250
Bse1I	ACTGG	3 cut(s)	803, 950, 981
Bse3DI	GCAATG	2 cut(s)	897, 951
BseBI	CCWGG	4 cut(s)	19, 165, 246, 1189
BseDI	CCNNGG	6 cut(s)	18, 105, 141, 245, 741, 1090
BseGI	GGATG	4 cut(s)	10, 161, 852, 912
BseLI	CCNNNNNNNGG	5 cut(s)	190, 274, 558, 691, 1250
BseMI	GCAATG	2 cut(s)	897, 951
BseMII	CTCAG	4 cut(s)	338, 426, 720, 1247
BseNI	ACTGG	3 cut(s)	803, 950, 981
BseXI	GCAGC	4 cut(s)	372, 536, 553, 637
BshFI	GGCC	5 cut(s)	104, 521, 684, 896, 1000
BshNI	GGYRCC	2 cut(s)	319, 745
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	372, 507
BslI	CCNNNNNNNGG	5 cut(s)	190, 274, 558, 691, 1250
BsmAI	GTCTC	3 cut(s)	134, 865, 1091
BsmBI	CGTCTC	1 cut(s)	865
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	5 cut(s)	104, 521, 684, 896, 1000
Bso31I	GGTCTC	2 cut(s)	134, 1091
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	259, 380, 450, 1259
Bsp19I	CCATGG	2 cut(s)	105, 141
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	5 cut(s)	104, 521, 684, 896, 1000
BspCNI	CTCAG	4 cut(s)	337, 425, 721, 1248
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	4 cut(s)	162, 243, 321, 747
BspMAI	CTGCAG	1 cut(s)	390
BspT107I	GGYRCC	2 cut(s)	319, 745
BspTNI	GGTCTC	2 cut(s)	134, 1091
BsrDI	GCAATG	2 cut(s)	897, 951
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	3 cut(s)	803, 950, 981
BssECI	CCNNGG	6 cut(s)	18, 105, 141, 245, 741, 1090
BssMI	GATC	4 cut(s)	259, 380, 450, 1259
BssT1I	CCWWGG	4 cut(s)	105, 141, 741, 1090
Bst2UI	CCWGG	4 cut(s)	19, 165, 246, 1189
Bst4CI	ACNGT	2 cut(s)	406, 973
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	285, 682, 1155
BstDEI	CTNAG	5 cut(s)	324, 412, 646, 729, 1256
BstDSI	CCRYGG	2 cut(s)	105, 141
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	4 cut(s)	10, 161, 852, 912
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	4 cut(s)	262, 383, 453, 1262
BstMAI	GTCTC	3 cut(s)	134, 865, 1091
BstMBI	GATC	4 cut(s)	259, 380, 450, 1259
BstMWI	GCNNNNNNNGC	2 cut(s)	417, 563
BstNI	CCWGG	4 cut(s)	19, 165, 246, 1189
BstNSI	RCATGY	2 cut(s)	287, 904
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	4 cut(s)	17, 163, 244, 1187
BstSFI	CTRYAG	2 cut(s)	386, 624
BstV1I	GCAGC	4 cut(s)	372, 536, 553, 637
BstV2I	GAAGAC	1 cut(s)	852
BstXI	CCANNNNNNTGG	1 cut(s)	923
BsuRI	GGCC	5 cut(s)	104, 521, 684, 896, 1000
BtgI	CCRYGG	2 cut(s)	105, 141
BtsCI	GGATG	4 cut(s)	10, 161, 852, 912
BtsIMutI	CAGTG	3 cut(s)	402, 957, 1087
Cac8I	GCNNGC	3 cut(s)	285, 682, 1155
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	4 cut(s)	161, 181, 394, 694
Csp6I	GTAC	3 cut(s)	361, 746, 974
CviQI	GTAC	3 cut(s)	361, 746, 974
DdeI	CTNAG	5 cut(s)	324, 412, 646, 729, 1256
DpnI	GATC	4 cut(s)	261, 382, 452, 1261
DpnII	GATC	4 cut(s)	259, 380, 450, 1259
DraIII	CACNNNGTG	2 cut(s)	408, 472
EaeI	YGGCCR	4 cut(s)	102, 519, 682, 894
Eco130I	CCWWGG	4 cut(s)	105, 141, 741, 1090
Eco31I	GGTCTC	2 cut(s)	134, 1091
Eco47I	GGWCC	4 cut(s)	161, 181, 394, 694
Eco57I	CTGAAG	1 cut(s)	1063
Eco91I	GGTNACC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	367
EcoRII	CCWGG	4 cut(s)	17, 163, 244, 1187
EcoT14I	CCWWGG	4 cut(s)	105, 141, 741, 1090
EcoT22I	ATGCAT	2 cut(s)	234, 289
ErhI	CCWWGG	4 cut(s)	105, 141, 741, 1090
Esp3I	CGTCTC	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	1161
Fnu4HI	GCNGC	5 cut(s)	386, 522, 525, 567, 651
FokI	GGATG	4 cut(s)	17, 168, 839, 899
Fsp4HI	GCNGC	5 cut(s)	386, 522, 525, 567, 651
FspBI	CTAG	2 cut(s)	572, 812
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	5 cut(s)	386, 522, 525, 567, 651
HaeIII	GGCC	5 cut(s)	104, 521, 684, 896, 1000
HapII	CCGG	2 cut(s)	372, 507
HhaI	GCGC	1 cut(s)	571
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HinfI	GANTC	3 cut(s)	762, 1062, 1176
HpaII	CCGG	2 cut(s)	372, 507
HphI	GGTGA	4 cut(s)	305, 361, 671, 1233
Hpy166II	GTNNAC	3 cut(s)	361, 466, 1162
Hpy188I	TCNGA	2 cut(s)	415, 936
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	3 cut(s)	361, 466, 1162
HpyAV	CCTTC	4 cut(s)	385, 494, 729, 747
HpyCH4III	ACNGT	2 cut(s)	406, 973
HpyCH4IV	ACGT	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	417, 563
HpyF3I	CTNAG	5 cut(s)	324, 412, 646, 729, 1256
HpySE526I	ACGT	1 cut(s)	253
HspAI	GCGC	1 cut(s)	569
KpnI	GGTACC	1 cut(s)	749
Kzo9I	GATC	4 cut(s)	259, 380, 450, 1259
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	4 cut(s)	372, 536, 553, 637
LweI	GCATC	2 cut(s)	219, 1218
MaeI	CTAG	2 cut(s)	572, 812
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	7 cut(s)	97, 263, 367, 542, 605, 1021, 1239
MalI	GATC	4 cut(s)	261, 382, 452, 1261
MboI	GATC	4 cut(s)	259, 380, 450, 1259
MboII	GAAGA	5 cut(s)	48, 390, 857, 1069, 1204
MfeI	CAATTG	1 cut(s)	1245
MhlI	GDGCHC	1 cut(s)	413
MlsI	TGGCCA	2 cut(s)	684, 896
MluNI	TGGCCA	2 cut(s)	684, 896
MlyI	GAGTC	1 cut(s)	771
MmeI	TCCRAC	2 cut(s)	91, 1039
MnlI	CCTC	8 cut(s)	54, 333, 368, 469, 707, 866, 1097, 1244
Mox20I	TGGCCA	2 cut(s)	684, 896
Mph1103I	ATGCAT	2 cut(s)	234, 289
MscI	TGGCCA	2 cut(s)	684, 896
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	2 cut(s)	317, 782
Msp20I	TGGCCA	2 cut(s)	684, 896
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	372, 507
MspR9I	CCNGG	4 cut(s)	19, 165, 246, 1189
MunI	CAATTG	1 cut(s)	1245
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	4 cut(s)	19, 165, 246, 1189
MwoI	GCNNNNNNNGC	2 cut(s)	417, 563
NcoI	CCATGG	2 cut(s)	105, 141
NdeII	GATC	4 cut(s)	259, 380, 450, 1259
NlaIV	GGNNCC	4 cut(s)	162, 243, 321, 747
NmuCI	GTSAC	2 cut(s)	367, 1239
NsiI	ATGCAT	2 cut(s)	234, 289
NspI	RCATGY	2 cut(s)	287, 904
PaeI	GCATGC	1 cut(s)	287
PagI	TCATGA	1 cut(s)	447
PciI	ACATGT	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	1062, 1176
PflMI	CCANNNNNTGG	3 cut(s)	274, 558, 691
PkrI	GCNGC	5 cut(s)	387, 523, 526, 568, 652
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
PpuMI	RGGWCCY	1 cut(s)	161
PscI	ACATGT	1 cut(s)	900
PshBI	ATTAAT	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	4 cut(s)	17, 163, 244, 1187
PspEI	GGTNACC	1 cut(s)	367
PspGI	CCWGG	4 cut(s)	17, 163, 244, 1187
PspN4I	GGNNCC	4 cut(s)	162, 243, 321, 747
PspPI	GGNCC	4 cut(s)	161, 181, 394, 694
PspPPI	RGGWCCY	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	3 cut(s)	362, 747, 975
RsaNI	GTAC	3 cut(s)	361, 746, 974
RseI	CAYNNNNRTG	2 cut(s)	317, 782
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	5 cut(s)	386, 522, 525, 567, 651
Sau3AI	GATC	4 cut(s)	259, 380, 450, 1259
Sau96I	GGNCC	4 cut(s)	161, 181, 394, 694
SchI	GAGTC	1 cut(s)	771
ScrFI	CCNGG	4 cut(s)	19, 165, 246, 1189
SduI	GDGCHC	1 cut(s)	413
SfaNI	GCATC	2 cut(s)	219, 1218
SfcI	CTRYAG	2 cut(s)	386, 624
SinI	GGWCC	4 cut(s)	161, 181, 394, 694
SmiMI	CAYNNNNRTG	2 cut(s)	317, 782
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
SphI	GCATGC	1 cut(s)	287
SsiI	CCGC	1 cut(s)	522
SspMI	CTAG	2 cut(s)	572, 812
StyD4I	CCNGG	4 cut(s)	17, 163, 244, 1187
StyI	CCWWGG	4 cut(s)	105, 141, 741, 1090
TaaI	ACNGT	2 cut(s)	406, 973
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	59, 597, 699
TaqII	GACCGA	1 cut(s)	116
TatI	WGTACW	2 cut(s)	360, 973
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	2 cut(s)	1062, 1176
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	3 cut(s)	409, 957, 1087
TseFI	GTSAC	2 cut(s)	367, 1239
TseI	GCWGC	4 cut(s)	385, 524, 566, 650
Tsp45I	GTSAC	2 cut(s)	367, 1239
TspDTI	ATGAA	3 cut(s)	21, 177, 433
TspRI	CASTG	3 cut(s)	409, 957, 1087
Van91I	CCANNNNNTGG	3 cut(s)	274, 558, 691
VpaK11BI	GGWCC	4 cut(s)	161, 181, 394, 694
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	3 cut(s)	631, 991, 1289
XceI	RCATGY	2 cut(s)	287, 904
XmiI	GTMKAC	1 cut(s)	1161
XspI	CTAG	2 cut(s)	572, 812
Zsp2I	ATGCAT	2 cut(s)	234, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.