AT5G40780

Transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
16323567 .. 16327382
3816 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40780.2

Sequence Viewer

Length: 1341 bp
ATGGTAGCTCAAGCTCCTCATGATGATCATCAGGATGATGAGAAATTAGCAGCAGCGAGACAAAAAGAGATCGAAGATTGGTTACCAATTACTTCATCAAGAAATGCAAAGTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTCGGTGCCGGAGTTCTTGGACTCCCTTACGCCATGTCTCAGCTCGGATGGGGACCGGGAATTGCAGTGTTGGTTTTGTCATGGGTCATAACACTATACACATTATGGCAAATGGTGGAAATGCATGAAATGGTTCCTGGAAAGCGTTTTGATCGTTACCATGAGCTCGGACAACACGCGTTTGGAGAAAAACTCGGTCTTTATATCGTTGTGCCGCAACAATTGATCGTTGAAATCGGTGTTTGCATCGTTTATATGGTCACTGGAGGCAAATCTTTAAAGAAATTTCATGAGCTTGTTTGTGATGATTGTAAACCAATCAAGCTTACTTATTTCATCATGATCTTTGCTTCGGTTCACTTCGTCCTCTCTCATCTTCCTAATTTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAAGACGTTCAATACGGTTACAAAGCGAAAACAACAGCCGGTACGGTTTTCAATTTCTTCAGCGGTTTAGGTGATGTGGCATTTGCTTACGCGGGTCATAATGTGGTCCTTGAGATCCAAGCAACTATCCCTTCAACGCCTGAGAAACCCTCAAAAGGTCCCATGTGGAGAGGAGTCATCGTTGCTTACATCGTCGTAGCGCTCTGTTATTTCCCCGTGGCTCTCGTTGGATACTACATTTTCGGGAACGGAGTCGAAGATAATATTCTCATGTCACTTAAGAAACCGGCGTGGTTAATCGCCACGGCGAACATCTTCGTCGTGATCCATGTCATTGGTAGTTACCAGATATATGCAATGCCGGTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCCCCAACCACATACTTCCTCCCTTGCGTCATTTGGTTAGCCATCTACAAACCCAAGAAATACAGCTTGTCTTGGTGGGCCAACTGGGTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGAGGGCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCATAA

Protein Analysis

446

Amino Acids

49.81

Weight (kDa)

8.89

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 1 - 382 1.3e-115 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 1 - 120 4.2e-08 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccII CGCG 3 cut(s) 326, 719, 1151
AciI CCGC 4 cut(s) 141, 362, 690, 719
AclWI GGATC 2 cut(s) 736, 946
AcsI RAATTY 2 cut(s) 431, 1030
AcuI CTGAAG 1 cut(s) 670
AfaI GTAC 2 cut(s) 119, 670
AfeI AGCGCT 1 cut(s) 828
AfiI CCNNNNNNNGG 3 cut(s) 782, 1118, 1289
AflII CTTAAG 1 cut(s) 905
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 7 cut(s) 380, 535, 626, 638, 679, 762, 1313
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 9 cut(s) 8, 14, 190, 313, 442, 472, 582, 1027, 1221
AluI AGCT 9 cut(s) 8, 14, 190, 313, 442, 472, 582, 1027, 1221
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 4 cut(s) 52, 189, 579, 1001
AlwI GGATC 2 cut(s) 736, 946
Aor51HI AGCGCT 1 cut(s) 828
AoxI GGCC 1 cut(s) 1233
ApeKI GCWGC 5 cut(s) 50, 53, 560, 563, 1082
ApoI RAATTY 2 cut(s) 431, 1030
Asp700I GAANNNNTTC 3 cut(s) 279, 633, 941
AspLEI GCGC 1 cut(s) 829
AspS9I GGNCC 5 cut(s) 200, 733, 785, 1233, 1273
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 130, 710
AvaII GGWCC 4 cut(s) 200, 733, 785, 1273
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 315
BarI GAAGNNNNNNTAC 2 cut(s) 66, 98
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 5 cut(s) 62, 65, 547, 550, 1069
BccI CCATC 5 cut(s) 189, 548, 997, 1205, 1264
BceAI ACGGC 2 cut(s) 551, 948
BciT130I CCWGG 1 cut(s) 285
BciVI GTATCC 2 cut(s) 851, 1316
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 4 cut(s) 52, 189, 579, 1001
BfoI RGCGCY 1 cut(s) 830
BfrI CTTAAG 1 cut(s) 905
BfuI GTATCC 2 cut(s) 851, 1316
BisI GCNGC 6 cut(s) 51, 54, 362, 561, 564, 1083
BlsI GCNGC 6 cut(s) 52, 55, 363, 562, 565, 1084
Bme1390I CCNGG 2 cut(s) 204, 285
Bme18I GGWCC 4 cut(s) 200, 733, 785, 1273
BmgT120I GGNCC 5 cut(s) 200, 733, 785, 1233, 1273
BmiI GGNNCC 4 cut(s) 154, 201, 282, 787
BmrFI CCNGG 2 cut(s) 204, 285
BmrI ACTGGG 1 cut(s) 1249
BmsI GCATC 3 cut(s) 402, 611, 1257
BmuI ACTGGG 1 cut(s) 1249
BpiI GAAGAC 1 cut(s) 636
BplI GAGNNNNNCTC 4 cut(s) 324, 356, 761, 793
BpmI CTGGAG 1 cut(s) 432
Bpu10I CCTNAGC 1 cut(s) 1295
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 144, 843, 930
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 3 cut(s) 782, 1118, 1289
Bse118I RCCGGY 3 cut(s) 665, 913, 988
Bse1I ACTGG 2 cut(s) 415, 1244
Bse3DI GCAATG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 144, 843, 930
BseGI GGATG 2 cut(s) 40, 200
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 782, 1118, 1289
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 3 cut(s) 200, 592, 759
BseNI ACTGG 2 cut(s) 415, 1244
BseRI GAGGAG 2 cut(s) 6, 813
BseXI GCAGC 5 cut(s) 62, 65, 547, 550, 1069
Bsh1236I CGCG 3 cut(s) 326, 719, 1151
BshFI GGCC 1 cut(s) 1235
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 6 cut(s) 156, 203, 546, 666, 914, 989
BslFI GGGAC 2 cut(s) 213, 771
BslI CCNNNNNNNGG 3 cut(s) 782, 1118, 1289
BsmAI GTCTC 4 cut(s) 52, 189, 579, 1001
BsmFI GGGAC 2 cut(s) 213, 771
BsnI GGCC 1 cut(s) 1235
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 7 cut(s) 25, 69, 298, 372, 489, 741, 951
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 4 cut(s) 141, 362, 690, 719
BspANI GGCC 1 cut(s) 1235
BspCNI CTCAG 3 cut(s) 199, 591, 760
BspFNI CGCG 3 cut(s) 326, 719, 1151
BspHI TCATGA 3 cut(s) 19, 436, 486
BspLI GGNNCC 4 cut(s) 154, 201, 282, 787
BspPI GGATC 2 cut(s) 736, 946
BspT107I GGYRCC 1 cut(s) 152
BspTI CTTAAG 1 cut(s) 905
BsrDI GCAATG 1 cut(s) 990
BsrFI RCCGGY 3 cut(s) 665, 913, 988
BsrI ACTGG 2 cut(s) 415, 1244
BssAI RCCGGY 3 cut(s) 665, 913, 988
BssECI CCNNGG 3 cut(s) 144, 843, 930
BssMI GATC 7 cut(s) 25, 69, 298, 372, 489, 741, 951
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 644, 673
Bst6I CTCTTC 1 cut(s) 1056
BstAFI CTTAAG 1 cut(s) 905
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 4 cut(s) 186, 578, 768, 1295
BstDSI CCRYGG 3 cut(s) 144, 843, 930
BstEII GGTNACC 1 cut(s) 81
BstF5I GGATG 2 cut(s) 40, 200
BstFNI CGCG 3 cut(s) 326, 719, 1151
BstH2I RGCGCY 1 cut(s) 830
BstHHI GCGC 1 cut(s) 829
BstKTI GATC 7 cut(s) 28, 72, 301, 375, 492, 744, 954
BstMAI GTCTC 4 cut(s) 52, 189, 579, 1001
BstMBI GATC 7 cut(s) 25, 69, 298, 372, 489, 741, 951
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 1 cut(s) 285
BstPI GGTNACC 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 202, 283
BstUI CGCG 3 cut(s) 326, 719, 1151
BstV1I GCAGC 5 cut(s) 62, 65, 547, 550, 1069
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 741
BstXI CCANNNNNNTGG 1 cut(s) 962
BstYI RGATCY 1 cut(s) 741
BsuI GTATCC 2 cut(s) 851, 1316
BsuRI GGCC 1 cut(s) 1235
BtgI CCRYGG 3 cut(s) 144, 843, 930
BtsCI GGATG 2 cut(s) 40, 200
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 408
Cac8I GCNNGC 1 cut(s) 613
CciI TCATGA 3 cut(s) 19, 436, 486
CfoI GCGC 1 cut(s) 829
Cfr10I RCCGGY 3 cut(s) 665, 913, 988
Cfr13I GGNCC 5 cut(s) 200, 733, 785, 1233, 1273
CseI GACGC 1 cut(s) 1171
Csp6I GTAC 2 cut(s) 118, 669
CviQI GTAC 2 cut(s) 118, 669
DdeI CTNAG 4 cut(s) 186, 578, 768, 1295
DpnI GATC 7 cut(s) 27, 71, 300, 374, 491, 743, 953
DpnII GATC 7 cut(s) 25, 69, 298, 372, 489, 741, 951
DraI TTTAAA 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 1056
EarI CTCTTC 1 cut(s) 1056
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 4 cut(s) 200, 733, 785, 1273
Eco47III AGCGCT 1 cut(s) 828
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 670
Eco91I GGTNACC 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 785
EcoO65I GGTNACC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 2 cut(s) 273, 1250
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 144
FaqI GGGAC 2 cut(s) 213, 771
FauI CCCGC 1 cut(s) 712
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 6 cut(s) 51, 54, 362, 561, 564, 1083
FokI GGATG 2 cut(s) 47, 207
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 6 cut(s) 51, 54, 362, 561, 564, 1083
GlaI GCGC 1 cut(s) 828
GluI GCNGC 6 cut(s) 51, 54, 362, 561, 564, 1083
GsuI CTGGAG 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 830
HaeIII GGCC 1 cut(s) 1235
HapII CCGG 6 cut(s) 156, 203, 546, 666, 914, 989
HgaI GACGC 1 cut(s) 1171
HhaI GCGC 1 cut(s) 829
Hin6I GCGC 1 cut(s) 827
HinP1I GCGC 1 cut(s) 827
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 4 cut(s) 168, 801, 879, 1146
HpaII CCGG 6 cut(s) 156, 203, 546, 666, 914, 989
HphI GGTGA 2 cut(s) 130, 710
Hpy166II GTNNAC 2 cut(s) 461, 505
Hpy188I TCNGA 3 cut(s) 194, 317, 1037
Hpy8I GTNNAC 2 cut(s) 461, 505
Hpy99I CGWCG 2 cut(s) 824, 950
HpyAV CCTTC 1 cut(s) 768
HpyCH4III ACNGT 2 cut(s) 644, 673
HpyCH4IV ACGT 3 cut(s) 633, 1077, 1106
HpyCH4V TGCA 7 cut(s) 107, 212, 271, 393, 983, 1085, 1248
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 4 cut(s) 186, 578, 768, 1295
HpySE526I ACGT 3 cut(s) 633, 1077, 1106
HspAI GCGC 1 cut(s) 827
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 7 cut(s) 25, 69, 298, 372, 489, 741, 951
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 5 cut(s) 62, 65, 547, 550, 1069
LweI GCATC 3 cut(s) 402, 611, 1257
MaeII ACGT 3 cut(s) 633, 1077, 1106
MaeIII GTNAC 7 cut(s) 81, 136, 302, 406, 644, 900, 968
MalI GATC 7 cut(s) 27, 71, 300, 374, 491, 743, 953
MboI GATC 7 cut(s) 25, 69, 298, 372, 489, 741, 951
MboII GAAGA 8 cut(s) 86, 515, 641, 676, 896, 934, 1043, 1108
MfeI CAATTG 2 cut(s) 368, 1284
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 315
MluI ACGCGT 1 cut(s) 324
MlyI GAGTC 3 cut(s) 162, 810, 888
MmeI TCCRAC 1 cut(s) 835
MnlI CCTC 7 cut(s) 27, 407, 524, 787, 791, 1184, 1283
Mph1103I ATGCAT 2 cut(s) 273, 1250
MroXI GAANNNNTTC 3 cut(s) 279, 633, 941
MseI TTAA 3 cut(s) 425, 906, 923
MslI CAYNNNNRTG 2 cut(s) 33, 143
MspA1I CMGCKG 1 cut(s) 690
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 6 cut(s) 156, 203, 546, 666, 914, 989
MspR9I CCNGG 2 cut(s) 204, 285
MunI CAATTG 2 cut(s) 368, 1284
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 3 cut(s) 326, 719, 1151
MwoI GCNNNNNNNGC 1 cut(s) 608
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 1 cut(s) 144
NdeII GATC 7 cut(s) 25, 69, 298, 372, 489, 741, 951
NlaIV GGNNCC 4 cut(s) 154, 201, 282, 787
NmuCI GTSAC 3 cut(s) 136, 406, 900
NsiI ATGCAT 2 cut(s) 273, 1250
PagI TCATGA 3 cut(s) 19, 436, 486
PdmI GAANNNNTTC 3 cut(s) 279, 633, 941
PfeI GAWTC 1 cut(s) 1146
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 6 cut(s) 52, 55, 363, 562, 565, 1084
PleI GAGTC 3 cut(s) 162, 809, 887
PpsI GAGTC 3 cut(s) 162, 809, 887
PpuMI RGGWCCY 1 cut(s) 785
Psp124BI GAGCTC 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 785
Psp6I CCWGG 1 cut(s) 283
PspEI GGTNACC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 4 cut(s) 154, 201, 282, 787
PspPI GGNCC 5 cut(s) 200, 733, 785, 1233, 1273
PspPPI RGGWCCY 1 cut(s) 785
PsuI RGATCY 1 cut(s) 741
RsaI GTAC 2 cut(s) 119, 670
RsaNI GTAC 2 cut(s) 118, 669
RseI CAYNNNNRTG 2 cut(s) 33, 143
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 425, 906, 923
SatI GCNGC 6 cut(s) 51, 54, 362, 561, 564, 1083
Sau3AI GATC 7 cut(s) 25, 69, 298, 372, 489, 741, 951
Sau96I GGNCC 5 cut(s) 200, 733, 785, 1233, 1273
SchI GAGTC 3 cut(s) 162, 810, 888
ScrFI CCNGG 2 cut(s) 204, 285
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 3 cut(s) 402, 611, 1257
SinI GGWCC 4 cut(s) 200, 733, 785, 1273
SmiMI CAYNNNNRTG 2 cut(s) 33, 143
SmlI CTYRAG 3 cut(s) 9, 737, 905
SmoI CTYRAG 3 cut(s) 9, 737, 905
SsiI CCGC 4 cut(s) 141, 362, 690, 719
SspI AATATT 1 cut(s) 892
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 202, 283
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 644, 673
TaiI ACGT 3 cut(s) 636, 1080, 1109
TaqI TCGA 2 cut(s) 72, 882
TaqII GACCGA 1 cut(s) 332
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 1 cut(s) 1146
Tru1I TTAA 3 cut(s) 425, 906, 923
Tru9I TTAA 3 cut(s) 425, 906, 923
TscAI CASTG 2 cut(s) 219, 415
TseFI GTSAC 3 cut(s) 136, 406, 900
TseI GCWGC 5 cut(s) 50, 53, 560, 563, 1082
Tsp45I GTSAC 3 cut(s) 136, 406, 900
TspDTI ATGAA 4 cut(s) 84, 288, 425, 472
TspGWI ACGGA 3 cut(s) 891, 1055, 1101
TspRI CASTG 2 cut(s) 219, 415
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 4 cut(s) 200, 733, 785, 1273
XapI RAATTY 2 cut(s) 431, 1030
XmnI GAANNNNTTC 3 cut(s) 279, 633, 941
Zsp2I ATGCAT 2 cut(s) 273, 1250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.