Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Forward (+)

11891046 .. 11894355

Gene Structure 3310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGATCGTTAAGGCATCCAAATTGCAATTTACACGAACGGACAGAATCTCCAAGGAAAAGGCAATCAATGAGTGGCTTCCAATTACTTCTAAGAGAAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTTACAGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCTGAGCTTGGATGGGGTCCTGGTATAGCTATTTTGGTCCTTTCATGGGTCATCACATTGTACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAGCATGCATTTGGTGAAAAGCTTGGTCTTTACATTGTGGTTCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTCTACATGGTCACCGGAGGAAAATCGCTGCAGAAGGTCCATGACACTGCGTGCTCAGACTGCAAAAAGATCAAATTGACTTACTTCATTATGATCTTTGCCTCTGTTCACTTTGTGCTTTCCCTCCTTCCCAACTTCCACTCCATCTCCGGCGTGTCTTTGGCCGCAGCTGTCATGTCCTTGAGTTACTCTACCATAGCATGGACTACTTCGCTAGACAAGGGTGTGTTAGAAAATGTCGATTATAGTTACAAAGCCAAGACTACTACAGGAAAATTTTTCAACTTCTTAGCTGCATTGGGTGAAGTGGCTTTTGCGTATGCTGGCCATAATGTAGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCCATGTGGAGAGGAGTCATTTTTGCCTATATAATTGTGGCCTTGTGCTACTTCCCAGTTTCTCTGGTGGGATATTACATATTTGGCAATTCAGTTGATGACGACATCCTCATCACGTTGGAAAGACCCAAATGGCTAATTGCAATGGCAAACATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGGTTTATGCAATGCCAGTGTTTGACATGATGGAAACTCTACTGGTAAAGAAGTGGGATTTCAGACCAACTTTTAAGCTTCGCTTTATTACACGAACTTCATATGTTGCAATTACCATGTTTGTCGGAATCACATTCCCTTTCTTCAGTGGTCTCCTTGGATTTTTCGGAGGATTTGCTTTTGCCCCAACAACATATTTTCTCCCTTGCATAATGTGGCTTGCCATCTACAAACCAAAGAGATTCGGCTTATCCTGGTGGTGCAACTATATCTGCATCTTCTTTGGTGTTCTTTTGATGGTTCTATCACCAATTGGAGGGCTGAGATCAATCATAGTTCAATCCAAGACCTACGAATTTTACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

444

Amino Acids

50.2

Weight (kDa)

9.2

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	33 - 428	1.2e-111	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	38 - 172	1.4e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	778
AccB7I	CCANNNNNTGG	2 cut(s)	307, 591
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	1 cut(s)	555
AclI	AACGTT	1 cut(s)	286
AcoI	YGGCCR	2 cut(s)	552, 715
AcsI	RAATTY	2 cut(s)	665, 1322
AcuI	CTGAAG	1 cut(s)	1096
AdeI	CACNNNGTG	2 cut(s)	441, 505
AfaI	GTAC	2 cut(s)	239, 780
AfiI	CCNNNNNNNGG	4 cut(s)	223, 307, 591, 1283
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	3 cut(s)	374, 673, 1307
AjnI	CCWGG	3 cut(s)	196, 277, 1220
AjuI	GAANNNNNNNTTGG	2 cut(s)	732, 764
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	8 cut(s)	149, 184, 206, 334, 560, 683, 963, 1045
AluI	AGCT	8 cut(s)	149, 184, 206, 334, 560, 683, 963, 1045
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	2 cut(s)	167, 1124
AoxI	GGCC	3 cut(s)	552, 715, 819
ApeKI	GCWGC	3 cut(s)	418, 557, 683
ApoI	RAATTY	2 cut(s)	665, 1322
Asp718I	GGTACC	1 cut(s)	778
AspS9I	GGNCC	3 cut(s)	194, 214, 427
AsuHPI	GGTGA	4 cut(s)	338, 394, 704, 1266
AvaII	GGWCC	3 cut(s)	194, 214, 427
BaeI	ACNNNNGTAYC	2 cut(s)	770, 803
BalI	TGGCCA	1 cut(s)	717
BanI	GGYRCC	1 cut(s)	778
Bbv12I	GWGCWC	1 cut(s)	446
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	405, 569, 670
BccI	CCATC	6 cut(s)	183, 265, 542, 991, 1199, 1258
BciT130I	CCWGG	3 cut(s)	198, 279, 1222
BcoDI	GTCTC	2 cut(s)	167, 1124
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	2 cut(s)	419, 657
BisI	GCNGC	4 cut(s)	419, 555, 558, 684
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	4 cut(s)	420, 556, 559, 685
Bme1390I	CCNGG	3 cut(s)	198, 279, 1222
Bme18I	GGWCC	3 cut(s)	194, 214, 427
BmgT120I	GGNCC	3 cut(s)	194, 214, 427
BmiI	GGNNCC	4 cut(s)	195, 276, 354, 780
BmrFI	CCNGG	3 cut(s)	198, 279, 1222
BmrI	ACTGGG	1 cut(s)	830
BmsI	GCATC	3 cut(s)	23, 252, 1251
BmuI	ACTGGG	1 cut(s)	830
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	592
BsaI	GGTCTC	2 cut(s)	167, 1124
BsaJI	CCNNGG	6 cut(s)	51, 138, 174, 278, 774, 1123
BsaWI	WCCGGW	1 cut(s)	404
BsaXI	ACNNNNNCTCC	8 cut(s)	32, 62, 138, 168, 515, 521, 545, 551
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 307, 591, 1283
Bse1I	ACTGG	3 cut(s)	836, 983, 1014
Bse3DI	GCAATG	2 cut(s)	930, 984
BseBI	CCWGG	3 cut(s)	198, 279, 1222
BseDI	CCNNGG	6 cut(s)	51, 138, 174, 278, 774, 1123
BseGI	GGATG	4 cut(s)	14, 194, 885, 945
BseLI	CCNNNNNNNGG	4 cut(s)	223, 307, 591, 1283
BseMI	GCAATG	2 cut(s)	930, 984
BseMII	CTCAG	5 cut(s)	171, 371, 459, 753, 1280
BseNI	ACTGG	3 cut(s)	836, 983, 1014
BseRI	GAGGAG	1 cut(s)	807
BseXI	GCAGC	3 cut(s)	405, 569, 670
BshFI	GGCC	3 cut(s)	554, 717, 821
BshNI	GGYRCC	1 cut(s)	778
BsiHKAI	GWGCWC	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	405, 540
BslI	CCNNNNNNNGG	4 cut(s)	223, 307, 591, 1283
BsmAI	GTCTC	2 cut(s)	167, 1124
BsnI	GGCC	3 cut(s)	554, 717, 821
Bso31I	GGTCTC	2 cut(s)	167, 1124
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	3, 292, 459, 483, 1292
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	2 cut(s)	138, 174
BspACI	CCGC	1 cut(s)	555
BspANI	GGCC	3 cut(s)	554, 717, 821
BspCNI	CTCAG	5 cut(s)	172, 370, 458, 754, 1281
BspLI	GGNNCC	4 cut(s)	195, 276, 354, 780
BspMAI	CTGCAG	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	778
BspTNI	GGTCTC	2 cut(s)	167, 1124
BsrDI	GCAATG	2 cut(s)	930, 984
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	836, 983, 1014
BssECI	CCNNGG	6 cut(s)	51, 138, 174, 278, 774, 1123
BssMI	GATC	5 cut(s)	3, 292, 459, 483, 1292
BssT1I	CCWWGG	5 cut(s)	51, 138, 174, 774, 1123
Bst2UI	CCWGG	3 cut(s)	198, 279, 1222
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	318, 442, 715, 1188
BstDEI	CTNAG	7 cut(s)	90, 180, 357, 445, 679, 762, 1289
BstDSI	CCRYGG	2 cut(s)	138, 174
BstEII	GGTNACC	1 cut(s)	400
BstF5I	GGATG	4 cut(s)	14, 194, 885, 945
BstKTI	GATC	5 cut(s)	6, 295, 462, 486, 1295
BstMAI	GTCTC	2 cut(s)	167, 1124
BstMBI	GATC	5 cut(s)	3, 292, 459, 483, 1292
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstNI	CCWGG	3 cut(s)	198, 279, 1222
BstNSI	RCATGY	2 cut(s)	320, 937
BstPI	GGTNACC	1 cut(s)	400
BstSCI	CCNGG	3 cut(s)	196, 277, 1220
BstSFI	CTRYAG	2 cut(s)	419, 657
BstV1I	GCAGC	3 cut(s)	405, 569, 670
BstXI	CCANNNNNNTGG	1 cut(s)	956
BsuRI	GGCC	3 cut(s)	554, 717, 821
BtgI	CCRYGG	2 cut(s)	138, 174
BtsCI	GGATG	4 cut(s)	14, 194, 885, 945
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	3 cut(s)	435, 990, 1120
Cac8I	GCNNGC	4 cut(s)	318, 442, 715, 1188
Cfr13I	GGNCC	3 cut(s)	194, 214, 427
Csp6I	GTAC	2 cut(s)	238, 779
CviQI	GTAC	2 cut(s)	238, 779
DdeI	CTNAG	7 cut(s)	90, 180, 357, 445, 679, 762, 1289
DpnI	GATC	5 cut(s)	5, 294, 461, 485, 1294
DpnII	GATC	5 cut(s)	3, 292, 459, 483, 1292
DraIII	CACNNNGTG	2 cut(s)	441, 505
EaeI	YGGCCR	2 cut(s)	552, 715
Eco130I	CCWWGG	5 cut(s)	51, 138, 174, 774, 1123
Eco31I	GGTCTC	2 cut(s)	167, 1124
Eco47I	GGWCC	3 cut(s)	194, 214, 427
Eco57I	CTGAAG	1 cut(s)	1096
Eco91I	GGTNACC	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	194
EcoO65I	GGTNACC	1 cut(s)	400
EcoRII	CCWGG	3 cut(s)	196, 277, 1220
EcoT14I	CCWWGG	5 cut(s)	51, 138, 174, 774, 1123
EcoT22I	ATGCAT	2 cut(s)	267, 322
ErhI	CCWWGG	5 cut(s)	51, 138, 174, 774, 1123
FalI	AAGNNNNNCTT	2 cut(s)	1034, 1066
FauNDI	CATATG	1 cut(s)	1069
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	419, 555, 558, 684
FokI	GGATG	3 cut(s)	201, 872, 932
Fsp4HI	GCNGC	4 cut(s)	419, 555, 558, 684
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	4 cut(s)	419, 555, 558, 684
HaeIII	GGCC	3 cut(s)	554, 717, 821
HapII	CCGG	2 cut(s)	405, 540
HindIII	AAGCTT	2 cut(s)	332, 1043
HinfI	GANTC	4 cut(s)	45, 795, 1095, 1209
HpaII	CCGG	2 cut(s)	405, 540
HphI	GGTGA	4 cut(s)	338, 394, 704, 1266
Hpy166II	GTNNAC	3 cut(s)	240, 394, 499
Hpy188I	TCNGA	4 cut(s)	448, 1031, 1094, 1136
Hpy8I	GTNNAC	3 cut(s)	240, 394, 499
HpyAV	CCTTC	4 cut(s)	418, 527, 762, 780
HpyCH4IV	ACGT	2 cut(s)	286, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	7 cut(s)	90, 180, 357, 445, 679, 762, 1289
HpySE526I	ACGT	2 cut(s)	286, 896
KpnI	GGTACC	1 cut(s)	782
Kzo9I	GATC	5 cut(s)	3, 292, 459, 483, 1292
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	3 cut(s)	405, 569, 670
LweI	GCATC	3 cut(s)	23, 252, 1251
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	2 cut(s)	286, 896
MaeIII	GTNAC	5 cut(s)	130, 296, 400, 575, 638
MalI	GATC	5 cut(s)	5, 294, 461, 485, 1294
MboI	GATC	5 cut(s)	3, 292, 459, 483, 1292
MboII	GAAGA	2 cut(s)	1102, 1237
MfeI	CAATTG	1 cut(s)	1278
MhlI	GDGCHC	1 cut(s)	446
MlsI	TGGCCA	1 cut(s)	717
MluNI	TGGCCA	1 cut(s)	717
MlyI	GAGTC	1 cut(s)	804
MmeI	TCCRAC	3 cut(s)	124, 879, 1072
MnlI	CCTC	9 cut(s)	366, 401, 502, 524, 740, 785, 899, 1130, 1277
Mox20I	TGGCCA	1 cut(s)	717
Mph1103I	ATGCAT	2 cut(s)	267, 322
MscI	TGGCCA	1 cut(s)	717
MseI	TTAA	3 cut(s)	9, 1041, 1333
Msp20I	TGGCCA	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	2 cut(s)	405, 540
MspR9I	CCNGG	3 cut(s)	198, 279, 1222
MunI	CAATTG	1 cut(s)	1278
MvaI	CCWGG	3 cut(s)	198, 279, 1222
MwoI	GCNNNNNNNGC	1 cut(s)	450
NcoI	CCATGG	2 cut(s)	138, 174
NdeI	CATATG	1 cut(s)	1069
NdeII	GATC	5 cut(s)	3, 292, 459, 483, 1292
NlaIV	GGNNCC	4 cut(s)	195, 276, 354, 780
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	2 cut(s)	267, 322
NspI	RCATGY	2 cut(s)	320, 937
PaeI	GCATGC	1 cut(s)	320
PciI	ACATGT	1 cut(s)	933
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PfeI	GAWTC	3 cut(s)	45, 1095, 1209
PflMI	CCANNNNNTGG	2 cut(s)	307, 591
PkrI	GCNGC	4 cut(s)	420, 556, 559, 685
PleI	GAGTC	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	803
PpuMI	RGGWCCY	1 cut(s)	194
PscI	ACATGT	1 cut(s)	933
Psp1406I	AACGTT	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	3 cut(s)	196, 277, 1220
PspEI	GGTNACC	1 cut(s)	400
PspGI	CCWGG	3 cut(s)	196, 277, 1220
PspN4I	GGNNCC	4 cut(s)	195, 276, 354, 780
PspPI	GGNCC	3 cut(s)	194, 214, 427
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	2 cut(s)	239, 780
RsaNI	GTAC	2 cut(s)	238, 779
SaqAI	TTAA	3 cut(s)	9, 1041, 1333
SatI	GCNGC	4 cut(s)	419, 555, 558, 684
Sau3AI	GATC	5 cut(s)	3, 292, 459, 483, 1292
Sau96I	GGNCC	3 cut(s)	194, 214, 427
SchI	GAGTC	1 cut(s)	804
ScrFI	CCNGG	3 cut(s)	198, 279, 1222
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	3 cut(s)	23, 252, 1251
SfcI	CTRYAG	2 cut(s)	419, 657
SinI	GGWCC	3 cut(s)	194, 214, 427
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
SphI	GCATGC	1 cut(s)	320
SsiI	CCGC	1 cut(s)	555
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	3 cut(s)	196, 277, 1220
StyI	CCWWGG	5 cut(s)	51, 138, 174, 774, 1123
TaiI	ACGT	2 cut(s)	289, 899
TaqI	TCGA	2 cut(s)	630, 732
TaqII	GACCGA	1 cut(s)	149
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	3 cut(s)	45, 1095, 1209
Tru1I	TTAA	3 cut(s)	9, 1041, 1333
Tru9I	TTAA	3 cut(s)	9, 1041, 1333
TscAI	CASTG	3 cut(s)	442, 990, 1120
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	418, 557, 683
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	210, 466, 1056
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	3 cut(s)	442, 990, 1120
Van91I	CCANNNNNTGG	2 cut(s)	307, 591
VpaK11BI	GGWCC	3 cut(s)	194, 214, 427
XapI	RAATTY	2 cut(s)	665, 1322
XceI	RCATGY	2 cut(s)	320, 937
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	605
Zsp2I	ATGCAT	2 cut(s)	267, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.