AT1G52370

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002533
Physical Location & Seq
Forward (+)
19506356 .. 19508934
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52370.2

Sequence Viewer

Length: 810 bp
ATGGCGGGTTGGCAGAAGAATTTACAGATTGTTATTCGTCAAGTTGGTAAAAGAGTTAAGGACAGTCACATTTCCACGGCAAATTACTCTTCCACACGGAATTTGGAATCCCCTTTCTCACAAGGTTATTTGCAGAGTCTCTTGAGATCAACCTATTCCTCAAGACCACTGTATTATCATCTACAACAACTGGGAATTTCTACCTCAAGACAATTGCAGGCGGGTGAGGAGCCTGTATCATCACCTTTGTCATCTCCAGCTCTGCTGGGTAGTGGAAAAGAAGAAGAGCAGAAGATTATCCCAAAGCGTCAGAAAGTTCAGGCTGTCCTCAAGTCCATAAAGCAGAGTCCTAAGAAGGTCAACTTGGTTGCAGCACTAGTCCGTGGCATGCGTGTTGAAGATGCTTTGATGCAATTGCAGGTCACGGTCAAACGAGCTTCACAAACTGTGTACCGGGTTATACATGCTGCGCGGGCAAATGCTACTCATAACCATGGACTAGATCCTGACCGTCTCCTTGTTGCGGAAGCGTTTGTTGGGAAGGGACTCTTTGGGAAGAAGGTAGCTTACCATGCAAAAGGAAGAAGCGGGATAATATCAATACCCAGGTGTCGTCTAACAGTCATAGTCAGAGAGACGACTGCAGAGGAAGAAGCTGAGATTGCAAGGCTGAAAGTTCACAATTTTAAGAAGCTAAACAAGCGGCAGAGACAGCTGGTACCACACAAGTTGATCGAGACAAGTCCAATCTGGAACCGCAGAGGTACCAAAGGCAATCACAGGTCATCTGAGTTGGTACCGTCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

269

Amino Acids

30.16

Weight (kDa)

10.6

Isoelectric Point (pI)

63.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 108 - 211 8.8e-29 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 409
Acc65I GGTACC 3 cut(s) 718, 764, 796
AccB1I GGYRCC 3 cut(s) 718, 764, 796
AccII CGCG 1 cut(s) 472
AciI CCGC 7 cut(s) 5, 221, 472, 524, 588, 703, 757
AclWI GGATC 1 cut(s) 497
AcsI RAATTY 3 cut(s) 19, 100, 195
AfaI GTAC 4 cut(s) 452, 720, 766, 798
AfiI CCNNNNNNNGG 1 cut(s) 523
AgsI TTSAA 1 cut(s) 398
AhlI ACTAGT 1 cut(s) 376
AjnI CCWGG 1 cut(s) 605
AjuI GAANNNNNNNTTGG 4 cut(s) 347, 379, 519, 551
AluBI AGCT 6 cut(s) 260, 437, 566, 656, 694, 715
AluI AGCT 6 cut(s) 260, 437, 566, 656, 694, 715
Alw26I GTCTC 5 cut(s) 143, 518, 629, 703, 731
AlwI GGATC 1 cut(s) 497
ApeKI GCWGC 2 cut(s) 371, 467
ApoI RAATTY 3 cut(s) 19, 100, 195
Asp718I GGTACC 3 cut(s) 718, 764, 796
AspLEI GCGC 1 cut(s) 472
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 2 cut(s) 234, 236
BanI GGYRCC 3 cut(s) 718, 764, 796
BarI GAAGNNNNNNTAC 2 cut(s) 551, 583
BbvI GCAGC 2 cut(s) 383, 454
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 607
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 5 cut(s) 143, 518, 629, 703, 731
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 2 cut(s) 377, 500
BfmI CTRYAG 1 cut(s) 642
BfuAI ACCTGC 1 cut(s) 409
BisI GCNGC 3 cut(s) 372, 468, 704
BlsI GCNGC 3 cut(s) 373, 469, 705
Bme1390I CCNGG 2 cut(s) 455, 607
BmiI GGNNCC 5 cut(s) 231, 720, 755, 766, 798
BmrFI CCNGG 2 cut(s) 455, 607
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 391, 399
BmuI ACTGGG 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 4 cut(s) 145, 163, 190, 314
BpuMI CCSGG 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 75, 382, 493, 605
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 4 cut(s) 75, 382, 493, 605
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMII CTCAG 2 cut(s) 648, 780
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 383, 454
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 472
BshNI GGYRCC 3 cut(s) 718, 764, 796
BsiSI CCGG 1 cut(s) 454
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 5 cut(s) 143, 518, 629, 703, 731
BsmBI CGTCTC 2 cut(s) 518, 629
BsmFI GGGAC 1 cut(s) 558
Bsp143I GATC 3 cut(s) 146, 502, 732
Bsp19I CCATGG 1 cut(s) 493
BspACI CCGC 7 cut(s) 5, 221, 472, 524, 588, 703, 757
BspCNI CTCAG 2 cut(s) 649, 781
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 5 cut(s) 231, 720, 755, 766, 798
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 1 cut(s) 497
BspQI GCTCTTC 1 cut(s) 279
BspT107I GGYRCC 3 cut(s) 718, 764, 796
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 4 cut(s) 75, 382, 493, 605
BssMI GATC 3 cut(s) 146, 502, 732
BssT1I CCWWGG 1 cut(s) 493
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 7 cut(s) 65, 171, 427, 448, 512, 622, 801
Bst6I CTCTTC 2 cut(s) 94, 279
BstC8I GCNNGC 3 cut(s) 219, 389, 474
BstDEI CTNAG 3 cut(s) 351, 657, 789
BstDSI CCRYGG 3 cut(s) 75, 382, 493
BstFNI CGCG 1 cut(s) 472
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 3 cut(s) 149, 505, 735
BstMAI GTCTC 5 cut(s) 143, 518, 629, 703, 731
BstMBI GATC 3 cut(s) 146, 502, 732
BstMWI GCNNNNNNNGC 5 cut(s) 473, 572, 662, 700, 712
BstNI CCWGG 1 cut(s) 607
BstNSI RCATGY 2 cut(s) 391, 467
BstSCI CCNGG 2 cut(s) 453, 605
BstSFI CTRYAG 1 cut(s) 642
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 2 cut(s) 383, 454
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BtgI CCRYGG 3 cut(s) 75, 382, 493
BtsIMutI CAGTG 1 cut(s) 167
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 219, 389, 474
CfoI GCGC 1 cut(s) 472
CseI GACGC 1 cut(s) 296
Csp6I GTAC 4 cut(s) 451, 719, 765, 797
CspCI CAANNNNNGTGG 2 cut(s) 711, 746
CviAII CATG 4 cut(s) 388, 464, 494, 572
CviJI RGCY 9 cut(s) 232, 260, 323, 437, 566, 656, 670, 694, 715
CviKI_1 RGCY 9 cut(s) 232, 260, 323, 437, 566, 656, 670, 694, 715
CviQI GTAC 4 cut(s) 451, 719, 765, 797
DdeI CTNAG 3 cut(s) 351, 657, 789
DpnI GATC 3 cut(s) 148, 504, 734
DpnII GATC 3 cut(s) 146, 502, 732
Eam1104I CTCTTC 2 cut(s) 94, 279
EarI CTCTTC 2 cut(s) 94, 279
Eco130I CCWWGG 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 493
Esp3I CGTCTC 2 cut(s) 518, 629
FaeI CATG 4 cut(s) 391, 467, 497, 575
FaiI YATR 8 cut(s) 338, 389, 461, 465, 489, 495, 573, 626
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 533, 565
FaqI GGGAC 1 cut(s) 558
FatI CATG 4 cut(s) 387, 463, 493, 571
FauI CCCGC 3 cut(s) 214, 465, 581
Fnu4HI GCNGC 3 cut(s) 372, 468, 704
Fsp4HI GCNGC 3 cut(s) 372, 468, 704
FspBI CTAG 2 cut(s) 377, 500
GlaI GCGC 1 cut(s) 471
GluI GCNGC 3 cut(s) 372, 468, 704
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 240
HapII CCGG 1 cut(s) 454
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 472
Hin1II CATG 4 cut(s) 391, 467, 497, 575
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 4 cut(s) 107, 136, 346, 546
HpaII CCGG 1 cut(s) 454
HphI GGTGA 2 cut(s) 234, 236
Hpy166II GTNNAC 3 cut(s) 361, 451, 679
Hpy188I TCNGA 3 cut(s) 312, 632, 790
Hpy188III TCNNGA 6 cut(s) 142, 162, 207, 506, 736, 751
Hpy8I GTNNAC 3 cut(s) 361, 451, 679
HpyAV CCTTC 3 cut(s) 349, 535, 553
HpyCH4III ACNGT 7 cut(s) 65, 171, 427, 448, 512, 622, 801
HpyCH4V TGCA 8 cut(s) 133, 217, 371, 412, 418, 575, 644, 665
HpyF10VI GCNNNNNNNGC 5 cut(s) 473, 572, 662, 700, 712
HpyF3I CTNAG 3 cut(s) 351, 657, 789
Hsp92II CATG 4 cut(s) 391, 467, 497, 575
HspAI GCGC 1 cut(s) 470
KpnI GGTACC 3 cut(s) 722, 768, 800
Kzo9I GATC 3 cut(s) 146, 502, 732
LguI GCTCTTC 1 cut(s) 279
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 2 cut(s) 383, 454
LweI GCATC 2 cut(s) 391, 399
MaeI CTAG 2 cut(s) 377, 500
MaeIII GTNAC 2 cut(s) 65, 421
MalI GATC 3 cut(s) 148, 504, 734
MboI GATC 3 cut(s) 146, 502, 732
MboII GAAGA 9 cut(s) 28, 81, 293, 296, 304, 410, 568, 594, 662
MfeI CAATTG 2 cut(s) 212, 413
MflI RGATCY 1 cut(s) 502
MluCI AATT 7 cut(s) 19, 82, 100, 195, 212, 413, 682
MlyI GAGTC 3 cut(s) 145, 355, 540
MnlI CCTC 6 cut(s) 169, 214, 220, 338, 640, 755
MseI TTAA 2 cut(s) 57, 687
MslI CAYNNNNRTG 1 cut(s) 492
MspA1I CMGCKG 1 cut(s) 715
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 2 cut(s) 455, 607
MunI CAATTG 2 cut(s) 212, 413
MvaI CCWGG 1 cut(s) 607
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 5 cut(s) 473, 572, 662, 700, 712
NciI CCSGG 1 cut(s) 455
NcoI CCATGG 1 cut(s) 493
NdeII GATC 3 cut(s) 146, 502, 732
NlaIII CATG 4 cut(s) 391, 467, 497, 575
NlaIV GGNNCC 5 cut(s) 231, 720, 755, 766, 798
NmuCI GTSAC 2 cut(s) 65, 421
NspI RCATGY 2 cut(s) 391, 467
PaeI GCATGC 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 3 cut(s) 373, 469, 705
PleI GAGTC 3 cut(s) 144, 354, 540
PpsI GAGTC 3 cut(s) 144, 354, 540
Psp6I CCWGG 1 cut(s) 605
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 605
PspN4I GGNNCC 5 cut(s) 231, 720, 755, 766, 798
PstI CTGCAG 1 cut(s) 646
PsuI RGATCY 1 cut(s) 502
PvuII CAGCTG 1 cut(s) 715
RsaI GTAC 4 cut(s) 452, 720, 766, 798
RsaNI GTAC 4 cut(s) 451, 719, 765, 797
RseI CAYNNNNRTG 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 57, 687
SatI GCNGC 3 cut(s) 372, 468, 704
Sau3AI GATC 3 cut(s) 146, 502, 732
SchI GAGTC 3 cut(s) 145, 355, 540
ScrFI CCNGG 2 cut(s) 455, 607
SfaNI GCATC 2 cut(s) 391, 399
SfcI CTRYAG 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 4 cut(s) 142, 160, 205, 329
SmoI CTYRAG 4 cut(s) 142, 160, 205, 329
SpeI ACTAGT 1 cut(s) 376
SphI GCATGC 1 cut(s) 391
Sse9I AATT 7 cut(s) 19, 82, 100, 195, 212, 413, 682
SsiI CCGC 7 cut(s) 5, 221, 472, 524, 588, 703, 757
SspMI CTAG 2 cut(s) 377, 500
StyD4I CCNGG 2 cut(s) 453, 605
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 7 cut(s) 65, 171, 427, 448, 512, 622, 801
TaqI TCGA 1 cut(s) 735
TasI AATT 7 cut(s) 19, 82, 100, 195, 212, 413, 682
TauI GCSGC 1 cut(s) 706
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 57, 687
Tru9I TTAA 2 cut(s) 57, 687
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 2 cut(s) 65, 421
TseI GCWGC 2 cut(s) 371, 467
Tsp45I GTSAC 2 cut(s) 65, 421
TspGWI ACGGA 2 cut(s) 112, 371
TspRI CASTG 1 cut(s) 174
XapI RAATTY 3 cut(s) 19, 100, 195
XceI RCATGY 2 cut(s) 391, 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 2 cut(s) 377, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.