Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002533

Physical Location & Seq

Genomic Coordinates Forward (+)

19234473 .. 19236773

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0216400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACTGTTGGAACCAATCCGTCTGGCTCCAAGTCAGGCAAATCGTTTGGTCATGAAAAATTACGGTTTCGGAATGGTAGAGTGAGGCCTGTTTCATTTATTTGTTATAAAGAAGAGAAAGGACTCACATATGAATGCCAAGGACGAAGGGTGTACCAGATTGAGTATGAGTCTAAAAAGATCAGTGATGCAGGAATCCTGAAGCTATTGGATGTGACTTCTTGTCCGGAAAAGAAAATGCACTTTATCTTCTATGAGAAATTTGACCGCTTTCTGTTCGGAAATTGGTTCAAGAATCACCCAAATGGGATGAGAGACCAGCATGGGGACATACAACCTTGGGTTCAAGATTCAATTAGGGATGTCATGGTGACCATAAAGAACATGTTGAATCGTCAGTTACTCCATTCAGGACTAGGAGATTTGAAGAACTATGTTATTGCAGAAGGCAAGATCAAGATAATTAACATCATGAGCAGTTGGGAGGACTTGGTCGACCCTCAAGAATTGAAAAATGGAGAAGACGTTCAAACTTTGGTGGGCAAGAGACGCTTAAACTCTCTCATAAGGAAAGAGATAACAAGTGTAAAGAAACTATGGCAAACTCTTTTGAAATCTGATGATGCCTGGCCTGAGAGAGATTACTTCCTCAGTATCTTTGATCAGAACCTACACCCGTGGGATGTTCACATAGAGAAAATAATTACTCACCCATTCTTGAAGACTTCGGAAGGGAGGGTCAAGTATTTTTCAGAGATATATCGTCAGCATATGACTCATTCAATTCCAAGACCTGATGTATTCTACAAGGCCATAAGAAATCATTTTGGTAAGTATCGTGGCACCATAAACTCTGTGAATATGAGCCGTCAGTTGAAAGCACTCTTCACTTCTGATACATATGGCAAACCCATTACTTATGGCAACACCATATTGGAGCTTTTGCGGTTCTTAAGGAATGCTTACGAGCACCGTGGTGCAGACTTTCCTGTGTGTGACTTGGATAGAAAGATTAGAAAGCATTGGCCGGGCTTTCTCGAGAAACTTCATGAGAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

353

Amino Acids

41.56

Weight (kDa)

9.49

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52370 AT1G52370 AT1G52370 AT1G52370 AT4G28360
fragaria_vesca	FvH4_6g20730 FvH4_6g20730
malus_domestica	MD12G1043300.v1.1 MD12G1043400.v1.1 MD14G1042400.v1.1
prunus_persica	Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1
pyrus_communis	pycom12g03740 pycom14g03610
rosa_chinensis	RchiOBHm_Chr3g0476631 RchiOBHm_Chr7g0223381
rosa_laevigata	RLG00000001980
rosa_multiflora	Rmu_sc0008241.1_g000012 Rmu_sc0009107.1_g000009 Rmu_sc0022781.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235860 Rroxscaffold_6G00405140
rosa_rugosa	Rorug03G0156000 Rorug03G0156000 Rorug03G0156000 Rorug03G0156100 Rorug03G0156200 Rorug07G0216400 Rorug07G0216400
rosa_samantha	Rh3AG206400 Rh3BG238800 Rh3CG232700 Rh3DG232700 Rh7AG360100 Rh7BG350100 Rh7CG378500 Rh7DG355300
rosa_wichuraiana	Rw3G018800 Rw7G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	842
AccI	GTMKAC	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	2 cut(s)	268, 946
AcoI	YGGCCR	1 cut(s)	1025
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	325
AflII	CTTAAG	1 cut(s)	952
AflIII	ACRYGT	1 cut(s)	384
AhdI	GACNNNNNGTC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	626
AleI	CACNNNNGTG	1 cut(s)	975
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	2 cut(s)	205, 940
AluI	AGCT	2 cut(s)	205, 940
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	2 cut(s)	309, 541
Ama87I	CYCGRG	1 cut(s)	1037
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	4 cut(s)	86, 629, 810, 1025
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	1029
AsuHPI	GGTGA	3 cut(s)	290, 382, 701
AvaI	CYCGRG	1 cut(s)	1037
BanI	GGYRCC	1 cut(s)	842
BbsI	GAAGAC	2 cut(s)	528, 728
Bbv12I	GWGCWC	1 cut(s)	972
BceAI	ACGGC	1 cut(s)	852
BciT130I	CCWGG	1 cut(s)	628
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	1029
BcoDI	GTCTC	2 cut(s)	309, 541
BfaI	CTAG	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	952
Bme1390I	CCNGG	2 cut(s)	628, 1029
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	1037
BmiI	GGNNCC	3 cut(s)	13, 28, 844
BmrFI	CCNGG	2 cut(s)	628, 1029
BmsI	GCATC	2 cut(s)	178, 613
BpiI	GAAGAC	2 cut(s)	528, 728
BpuEI	CTTGAG	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	1029
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	4 cut(s)	139, 338, 677, 973
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	4 cut(s)	139, 338, 677, 973
BseGI	GGATG	4 cut(s)	217, 315, 367, 688
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	624, 664
BsgI	GTGCAG	1 cut(s)	999
BshFI	GGCC	4 cut(s)	88, 631, 812, 1027
BshNI	GGYRCC	1 cut(s)	842
BsiHKAI	GWGCWC	1 cut(s)	972
BsiHKCI	CYCGRG	1 cut(s)	1037
BsiSI	CCGG	2 cut(s)	227, 1028
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	309, 541
BsmBI	CGTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	2 cut(s)	140, 964
BsnI	GGCC	4 cut(s)	88, 631, 812, 1027
Bso31I	GGTCTC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	1037
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	180, 453, 661
BspACI	CCGC	2 cut(s)	268, 946
BspANI	GGCC	4 cut(s)	88, 631, 812, 1027
BspCNI	CTCAG	2 cut(s)	625, 663
BspEI	TCCGGA	1 cut(s)	226
BspHI	TCATGA	3 cut(s)	52, 471, 1048
BspLI	GGNNCC	3 cut(s)	13, 28, 844
BspT107I	GGYRCC	1 cut(s)	842
BspTI	CTTAAG	1 cut(s)	952
BspTNI	GGTCTC	1 cut(s)	309
BssECI	CCNNGG	4 cut(s)	139, 338, 677, 973
BssMI	GATC	3 cut(s)	180, 453, 661
BssT1I	CCWWGG	2 cut(s)	139, 338
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	3 cut(s)	7, 66, 974
Bst6I	CTCTTC	2 cut(s)	108, 890
BstAFI	CTTAAG	1 cut(s)	952
BstDEI	CTNAG	2 cut(s)	633, 650
BstDSI	CCRYGG	2 cut(s)	677, 973
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	4 cut(s)	217, 315, 367, 688
BstKTI	GATC	3 cut(s)	183, 456, 664
BstMAI	GTCTC	2 cut(s)	309, 541
BstMBI	GATC	3 cut(s)	180, 453, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	549
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	388
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	626, 1027
BstV2I	GAAGAC	2 cut(s)	528, 728
BsuRI	GGCC	4 cut(s)	88, 631, 812, 1027
BtgI	CCRYGG	2 cut(s)	677, 973
BtsCI	GGATG	4 cut(s)	217, 315, 367, 688
BtsIMutI	CAGTG	1 cut(s)	190
CciI	TCATGA	3 cut(s)	52, 471, 1048
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	6 cut(s)	53, 323, 367, 385, 472, 1049
CviJI	RGCY	9 cut(s)	27, 88, 205, 631, 812, 867, 940, 1027, 1032
CviKI_1	RGCY	9 cut(s)	27, 88, 205, 631, 812, 867, 940, 1027, 1032
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	633, 650
DpnI	GATC	3 cut(s)	182, 455, 663
DpnII	GATC	3 cut(s)	180, 453, 661
DriI	GACNNNNNGTC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	1025
Eam1104I	CTCTTC	2 cut(s)	108, 890
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	2 cut(s)	108, 890
Eco130I	CCWWGG	2 cut(s)	139, 338
Eco147I	AGGCCT	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	1037
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	626
EcoT14I	CCWWGG	2 cut(s)	139, 338
ErhI	CCWWGG	2 cut(s)	139, 338
Esp3I	CGTCTC	1 cut(s)	541
FaeI	CATG	6 cut(s)	56, 326, 370, 388, 475, 1052
FalI	AAGNNNNNCTT	4 cut(s)	536, 568, 946, 978
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	6 cut(s)	52, 322, 366, 384, 471, 1048
FauNDI	CATATG	3 cut(s)	130, 771, 901
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	495
FokI	GGATG	4 cut(s)	224, 322, 374, 695
FspBI	CTAG	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	88, 631, 812, 1027
HapII	CCGG	2 cut(s)	227, 1028
HgaI	GACGC	1 cut(s)	558
Hin1II	CATG	6 cut(s)	56, 326, 370, 388, 475, 1052
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	8 cut(s)	123, 170, 195, 295, 350, 391, 775, 1054
HpaII	CCGG	2 cut(s)	227, 1028
HphI	GGTGA	3 cut(s)	290, 382, 701
Hpy166II	GTNNAC	3 cut(s)	154, 496, 688
Hpy188I	TCNGA	7 cut(s)	72, 281, 619, 666, 730, 754, 895
Hpy8I	GTNNAC	3 cut(s)	154, 496, 688
HpyAV	CCTTC	3 cut(s)	141, 440, 725
HpyCH4III	ACNGT	3 cut(s)	7, 66, 974
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	4 cut(s)	191, 241, 443, 980
HpyF10VI	GCNNNNNNNGC	1 cut(s)	549
HpyF3I	CTNAG	2 cut(s)	633, 650
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	6 cut(s)	56, 326, 370, 388, 475, 1052
Kpn2I	TCCGGA	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	3 cut(s)	180, 453, 661
LmnI	GCTCC	2 cut(s)	32, 937
LweI	GCATC	2 cut(s)	178, 613
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	4 cut(s)	214, 370, 399, 995
MalI	GATC	3 cut(s)	182, 455, 663
MboI	GATC	3 cut(s)	180, 453, 661
MboII	GAAGA	6 cut(s)	125, 241, 439, 533, 733, 877
MhlI	GDGCHC	1 cut(s)	972
MluCI	AATT	8 cut(s)	59, 260, 283, 354, 462, 506, 702, 783
MlyI	GAGTC	3 cut(s)	117, 179, 769
MnlI	CCTC	5 cut(s)	78, 478, 510, 659, 729
MroI	TCCGGA	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	3 cut(s)	465, 554, 953
MslI	CAYNNNNRTG	3 cut(s)	133, 303, 975
MspCI	CTTAAG	1 cut(s)	952
MspI	CCGG	2 cut(s)	227, 1028
MspR9I	CCNGG	2 cut(s)	628, 1029
Mva1269I	GAATGC	2 cut(s)	140, 964
MvaI	CCWGG	1 cut(s)	628
MwoI	GCNNNNNNNGC	1 cut(s)	549
NciI	CCSGG	1 cut(s)	1029
NdeI	CATATG	3 cut(s)	130, 771, 901
NdeII	GATC	3 cut(s)	180, 453, 661
NlaIII	CATG	6 cut(s)	56, 326, 370, 388, 475, 1052
NlaIV	GGNNCC	3 cut(s)	13, 28, 844
NmuCI	GTSAC	3 cut(s)	214, 370, 995
NspI	RCATGY	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	975
PaeR7I	CTCGAG	1 cut(s)	1037
PagI	TCATGA	3 cut(s)	52, 471, 1048
PceI	AGGCCT	1 cut(s)	88
PciI	ACATGT	1 cut(s)	384
PctI	GAATGC	2 cut(s)	140, 964
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	5 cut(s)	195, 295, 350, 391, 1054
PflFI	GACNNNGTC	1 cut(s)	491
PleI	GAGTC	3 cut(s)	117, 178, 769
PpsI	GAGTC	3 cut(s)	117, 178, 769
PscI	ACATGT	1 cut(s)	384
PsiI	TTATAA	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	3 cut(s)	13, 28, 844
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	3 cut(s)	133, 303, 975
SalI	GTCGAC	1 cut(s)	494
SaqAI	TTAA	3 cut(s)	465, 554, 953
Sau3AI	GATC	3 cut(s)	180, 453, 661
SchI	GAGTC	3 cut(s)	117, 179, 769
ScrFI	CCNGG	2 cut(s)	628, 1029
SduI	GDGCHC	1 cut(s)	972
SetI	ASST	6 cut(s)	207, 340, 528, 672, 796, 942
SfaNI	GCATC	2 cut(s)	178, 613
Sfr274I	CTCGAG	1 cut(s)	1037
SlaI	CTCGAG	1 cut(s)	1037
SmiMI	CAYNNNNRTG	3 cut(s)	133, 303, 975
SmlI	CTYRAG	3 cut(s)	501, 952, 1037
SmoI	CTYRAG	3 cut(s)	501, 952, 1037
Sse9I	AATT	8 cut(s)	59, 260, 283, 354, 462, 506, 702, 783
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	268, 946
SspMI	CTAG	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	2 cut(s)	626, 1027
StyI	CCWWGG	2 cut(s)	139, 338
TaaI	ACNGT	3 cut(s)	7, 66, 974
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	2 cut(s)	495, 1038
TasI	AATT	8 cut(s)	59, 260, 283, 354, 462, 506, 702, 783
TfiI	GAWTC	5 cut(s)	195, 295, 350, 391, 1054
Tru1I	TTAA	3 cut(s)	465, 554, 953
Tru9I	TTAA	3 cut(s)	465, 554, 953
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	3 cut(s)	214, 370, 995
Tsp45I	GTSAC	3 cut(s)	214, 370, 995
TspDTI	ATGAA	4 cut(s)	69, 84, 147, 1037
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	952
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	1037
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.