Rh7CG378500

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002533
Physical Location & Seq
Reverse (-)
47653704 .. 47656414
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG378500.1

Sequence Viewer

Length: 792 bp
ATGGCGGGGGGTTGGCAGAGGCATCTCCACTCCTTAATCCGTCGAGTATCCAATTACACCCAATCTGCCTCCTTTTCTTCTTCTTCTTCTTCTCGCTTAGGGGCTGGTTTGCCTTATCTGCAGAGACCATCTTCTCCTACCACTCCAAGGCCTCTTCATCACTACTTTCAACAATTGGGAATTTCGAGTTCGAGGAACTTACTTGCAGAGGAACCGGTTTCATCTCCTTTGACTCCGCTTTTGACATCAACTTCTGCAAAACCTGAAGAGCACAACCAGAAATCACTTGCTAAGCCTTCTACGGTTCAAGCTATTCTAAAGGGCATCAAACAGAGTCCTAAGAAGGTCAATTTGGTTGCTGCACTGGTTCGTGGCATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACAGTAAAGAGAGCTGCAAAAACTGTATATCAGGTTATTCACTCAGCCAGAGCAAATGCAACTCATAATCATTGGCTGGATCCAGACCGTCTCCTTGTTGCTGAGGCATTTGTTGGAAAGGGATACTACAAGAAAAGAATTTCCTACCATGCTAAAGGAAAATGTGGAGTCAAAATGAGACCAGAATGCCGACTGACAGTGGTAGTACGGGAGATTACCCCTGACGAGGAGGCCGAGATAGCCAAACTGAAAGTTAAGAATTTTGTTAAGCTCACCAAGCGGGAAAGAAGGCTTGTTCCTCATCAGCTGATTGAGACAACTTCAATTTGGGGCCGCAAAGGCAAGGGTCGCAATCATGAACCAAATGGTATCCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

263

Amino Acids

29.32

Weight (kDa)

10.46

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 104 - 207 4.1e-30 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 236, 691, 745
AclWI GGATC 2 cut(s) 485, 498
AcsI RAATTY 3 cut(s) 180, 549, 670
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 618
AfiI CCNNNNNNNGG 2 cut(s) 147, 637
AgeI ACCGGT 1 cut(s) 214
AgsI TTSAA 4 cut(s) 170, 308, 386, 735
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 4 cut(s) 311, 425, 682, 718
AluI AGCT 4 cut(s) 311, 425, 682, 718
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 4 cut(s) 118, 506, 583, 719
AlwI GGATC 2 cut(s) 485, 498
AoxI GGCC 3 cut(s) 149, 642, 742
ApeKI GCWGC 2 cut(s) 359, 425
ApoI RAATTY 3 cut(s) 180, 549, 670
ArsI GACNNNNNNTTYG 2 cut(s) 223, 255
AsiGI ACCGGT 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 742
AsuHPI GGTGA 1 cut(s) 676
BamHI GGATCC 1 cut(s) 490
Bbv12I GWGCWC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 346, 412
BccI CCATC 1 cut(s) 136
BciVI GTATCC 3 cut(s) 58, 527, 791
BcoDI GTCTC 4 cut(s) 118, 506, 583, 719
BfmI CTRYAG 1 cut(s) 119
BfuI GTATCC 3 cut(s) 58, 527, 791
BglI GCCNNNNNGGC 1 cut(s) 750
BisI GCNGC 3 cut(s) 360, 426, 745
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 3 cut(s) 361, 427, 746
BmgT120I GGNCC 1 cut(s) 742
BmiI GGNNCC 3 cut(s) 213, 492, 743
BmsI GCATC 3 cut(s) 31, 333, 379
Bpu10I CCTNAGC 2 cut(s) 97, 513
Bpu1102I GCTNAGC 1 cut(s) 291
BsaI GGTCTC 2 cut(s) 118, 583
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 637
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 147, 637
BseMII CTCAG 2 cut(s) 468, 504
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 653
BseXI GCAGC 2 cut(s) 346, 412
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 3 cut(s) 151, 644, 744
BshTI ACCGGT 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 147, 637
BsmAI GTCTC 4 cut(s) 118, 506, 583, 719
BsmBI CGTCTC 1 cut(s) 506
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 3 cut(s) 151, 644, 744
Bso31I GGTCTC 2 cut(s) 118, 583
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 490
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 4 cut(s) 5, 236, 691, 745
BspANI GGCC 3 cut(s) 151, 644, 744
BspCNI CTCAG 2 cut(s) 467, 505
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 3 cut(s) 213, 492, 743
BspMAI CTGCAG 1 cut(s) 123
BspPI GGATC 2 cut(s) 485, 498
BspQI GCTCTTC 1 cut(s) 261
BspTNI GGTCTC 2 cut(s) 118, 583
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 369
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 1 cut(s) 490
BssT1I CCWWGG 1 cut(s) 146
Bst4CI ACNGT 5 cut(s) 304, 415, 436, 500, 610
Bst6I CTCTTC 2 cut(s) 159, 261
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 5 cut(s) 97, 291, 339, 454, 513
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 4 cut(s) 118, 506, 583, 719
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 5 cut(s) 118, 650, 688, 750, 759
BstNSI RCATGY 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 346, 412
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuI GTATCC 3 cut(s) 58, 527, 791
BsuRI GGCC 3 cut(s) 151, 644, 744
BtsIMutI CAGTG 2 cut(s) 362, 615
Cac8I GCNNGC 1 cut(s) 377
CciI TCATGA 1 cut(s) 766
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 742
Csp6I GTAC 1 cut(s) 617
CspAI ACCGGT 1 cut(s) 214
CviAII CATG 4 cut(s) 376, 560, 767, 789
CviQI GTAC 1 cut(s) 617
DdeI CTNAG 5 cut(s) 97, 291, 339, 454, 513
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 159, 261
EarI CTCTTC 2 cut(s) 159, 261
Eco130I CCWWGG 1 cut(s) 146
Eco147I AGGCCT 1 cut(s) 151
Eco31I GGTCTC 2 cut(s) 118, 583
Eco57I CTGAAG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 4 cut(s) 379, 563, 770, 792
FaiI YATR 6 cut(s) 377, 439, 477, 561, 768, 790
FatI CATG 4 cut(s) 375, 559, 766, 788
FauI CCCGC 1 cut(s) 684
Fnu4HI GCNGC 3 cut(s) 360, 426, 745
Fsp4HI GCNGC 3 cut(s) 360, 426, 745
GluI GCNGC 3 cut(s) 360, 426, 745
HaeIII GGCC 3 cut(s) 151, 644, 744
HapII CCGG 1 cut(s) 215
Hin1II CATG 4 cut(s) 379, 563, 770, 792
HinfI GANTC 3 cut(s) 232, 334, 579
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 676
Hpy188III TCNNGA 2 cut(s) 494, 767
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 3 cut(s) 306, 337, 693
HpyCH4III ACNGT 5 cut(s) 304, 415, 436, 500, 610
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 650, 688, 750, 759
HpyF3I CTNAG 5 cut(s) 97, 291, 339, 454, 513
Hsp92II CATG 4 cut(s) 379, 563, 770, 792
Kzo9I GATC 1 cut(s) 490
LguI GCTCTTC 1 cut(s) 261
Lsp1109I GCAGC 2 cut(s) 346, 412
LweI GCATC 3 cut(s) 31, 333, 379
MaeIII GTNAC 1 cut(s) 409
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 9 cut(s) 69, 72, 75, 78, 81, 123, 146, 278, 398
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 7 cut(s) 52, 173, 180, 349, 549, 670, 735
MlyI GAGTC 3 cut(s) 226, 343, 588
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 9 cut(s) 12, 79, 162, 186, 202, 508, 631, 634, 720
Mph1103I ATGCAT 1 cut(s) 394
MseI TTAA 3 cut(s) 35, 666, 678
MspA1I CMGCKG 1 cut(s) 718
MspI CCGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 602
MwoI GCNNNNNNNGC 5 cut(s) 118, 650, 688, 750, 759
NdeII GATC 1 cut(s) 490
NlaIII CATG 4 cut(s) 379, 563, 770, 792
NlaIV GGNNCC 3 cut(s) 213, 492, 743
NmeAIII GCCGAG 1 cut(s) 670
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 1 cut(s) 379
PaeI GCATGC 1 cut(s) 379
PagI TCATGA 1 cut(s) 766
PceI AGGCCT 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 376, 642
PctI GAATGC 1 cut(s) 602
PinAI ACCGGT 1 cut(s) 214
PkrI GCNGC 3 cut(s) 361, 427, 746
PleI GAGTC 3 cut(s) 226, 342, 587
PpsI GAGTC 3 cut(s) 226, 342, 587
PspN4I GGNNCC 3 cut(s) 213, 492, 743
PspPI GGNCC 1 cut(s) 742
PstI CTGCAG 1 cut(s) 123
PsuI RGATCY 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 718
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 35, 666, 678
SatI GCNGC 3 cut(s) 360, 426, 745
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 1 cut(s) 742
SchI GAGTC 3 cut(s) 226, 343, 588
SduI GDGCHC 1 cut(s) 273
SetI ASST 7 cut(s) 265, 313, 348, 427, 447, 684, 720
SfaNI GCATC 3 cut(s) 31, 333, 379
SfcI CTRYAG 1 cut(s) 119
SphI GCATGC 1 cut(s) 379
Sse9I AATT 7 cut(s) 52, 173, 180, 349, 549, 670, 735
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 4 cut(s) 5, 236, 691, 745
StuI AGGCCT 1 cut(s) 151
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 5 cut(s) 304, 415, 436, 500, 610
TaqI TCGA 3 cut(s) 43, 185, 191
TasI AATT 7 cut(s) 52, 173, 180, 349, 549, 670, 735
TauI GCSGC 1 cut(s) 747
Tru1I TTAA 3 cut(s) 35, 666, 678
Tru9I TTAA 3 cut(s) 35, 666, 678
TscAI CASTG 2 cut(s) 369, 615
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 359, 425
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 3 cut(s) 146, 210, 783
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 369, 615
XapI RAATTY 3 cut(s) 180, 549, 670
XceI RCATGY 1 cut(s) 379
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.