RchiOBHm_Chr3g0476631

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002533
Physical Location & Seq
Reverse (-)
22647507 .. 22651054
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44202

Sequence Viewer

Length: 816 bp
ATGGCGGGTTGGCAGAGGCATCTCCACTCCTTAATCCGTCAAGTTGGGAGAACCCTCGAATCCAATTACACCCAATCTGCCTCCTTTTCTTCTTCTTCTTCTTCTCACTTAGAGGCTGGTTTGCCTTATTTGCAGAGACTCTGCAGCAGACCGTCTTCTCCTACCGTTCCAAGGCCTCTTCATCGCTACTTTCAACAATTGGGGATTTCGAGTTCGAGGAACTTACTTGCAGAAGAACCGGTTTCATCTCCGTTGACTCCTCTTTTGACATCAACTTCTGCAAAAGCTGAAGAGCACAACCAGAAATCGCTTACTAAGCCTTCTACAGTTCAAGCTATCCTAAAGGGCATCAAACAGAGTCCTAAGAAGGTCAATTTGGTTGCTGCACTGGTTCGTGGCATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACGGTAAAGAGAGCCGCAAAAACTGTATATCAGGTTATTCACTCAGCCAGAGCAAACGCAACTCATAATCATGGGCTGGATCCAGACCGTCTCCTTGTTGCTGAGGCATTTGTTGGAAAGGGATACTACAAGAAAAGAATTTCCTACCATGCTAAAGGAAAATGTGGAGTCAAAATGAGACCAGAATGCCGATTGACAGTGGTGGTACGGGAGATTACCCCTGACGAGGAGGCTGAGATAGCCAAACTGAAAGTTAAGAATTTTGTTAAGCTCACCAAGCGGGAAAGAAGGCTTGTTCCTCATCAGCTGATTGAGACAACATCAATTTGGGGCCGCAAAGGCAAGGGTCGCAATCATGAACCAAATGGTATCCCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

271

Amino Acids

30.2

Weight (kDa)

10.32

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 112 - 215 1.6e-30 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 450, 715, 769
AclWI GGATC 2 cut(s) 509, 522
AcsI RAATTY 2 cut(s) 573, 694
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 2 cut(s) 171, 661
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 194, 332, 410
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AloI GAACNNNNNNTCC 2 cut(s) 196, 228
AluBI AGCT 4 cut(s) 287, 335, 706, 742
AluI AGCT 4 cut(s) 287, 335, 706, 742
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 4 cut(s) 130, 530, 607, 743
AlwI GGATC 2 cut(s) 509, 522
AoxI GGCC 2 cut(s) 173, 766
ApeKI GCWGC 2 cut(s) 144, 383
ApoI RAATTY 2 cut(s) 573, 694
ArsI GACNNNNNNTTYG 2 cut(s) 247, 279
AsiGI ACCGGT 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 766
AsuHPI GGTGA 1 cut(s) 700
BamHI GGATCC 1 cut(s) 514
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 156, 370
BciVI GTATCC 2 cut(s) 551, 815
BcoDI GTCTC 4 cut(s) 130, 530, 607, 743
BfmI CTRYAG 2 cut(s) 142, 324
BfuI GTATCC 2 cut(s) 551, 815
BglI GCCNNNNNGGC 1 cut(s) 774
BisI GCNGC 4 cut(s) 145, 384, 450, 769
BlsI GCNGC 4 cut(s) 146, 385, 451, 770
BmgT120I GGNCC 1 cut(s) 766
BmiI GGNNCC 2 cut(s) 516, 767
BmsI GCATC 3 cut(s) 28, 357, 403
BpiI GAAGAC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 661
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 171, 661
BseMII CTCAG 3 cut(s) 492, 528, 660
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 2 cut(s) 249, 677
BseXI GCAGC 2 cut(s) 156, 370
BseYI CCCAGC 1 cut(s) 808
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 2 cut(s) 175, 768
BshTI ACCGGT 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 171, 661
BsmAI GTCTC 4 cut(s) 130, 530, 607, 743
BsmBI CGTCTC 1 cut(s) 530
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 2 cut(s) 175, 768
Bso31I GGTCTC 1 cut(s) 607
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 514
BspACI CCGC 4 cut(s) 5, 450, 715, 769
BspANI GGCC 2 cut(s) 175, 768
BspCNI CTCAG 3 cut(s) 491, 529, 661
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 2 cut(s) 516, 767
BspMAI CTGCAG 1 cut(s) 146
BspPI GGATC 2 cut(s) 509, 522
BspQI GCTCTTC 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 1 cut(s) 393
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 514
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 7 cut(s) 153, 166, 328, 439, 460, 524, 634
Bst6I CTCTTC 2 cut(s) 183, 285
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 6 cut(s) 109, 315, 363, 478, 537, 669
BstKTI GATC 1 cut(s) 517
BstMAI GTCTC 4 cut(s) 130, 530, 607, 743
BstMBI GATC 1 cut(s) 514
BstMWI GCNNNNNNNGC 6 cut(s) 130, 316, 674, 712, 774, 783
BstNSI RCATGY 1 cut(s) 403
BstSFI CTRYAG 2 cut(s) 142, 324
BstV1I GCAGC 2 cut(s) 156, 370
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuI GTATCC 2 cut(s) 551, 815
BsuRI GGCC 2 cut(s) 175, 768
BtgZI GCGATG 1 cut(s) 167
BtsIMutI CAGTG 2 cut(s) 386, 639
Cac8I GCNNGC 1 cut(s) 401
CciI TCATGA 1 cut(s) 790
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 766
Csp6I GTAC 1 cut(s) 641
CspAI ACCGGT 1 cut(s) 238
CviAII CATG 5 cut(s) 400, 506, 584, 791, 813
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 6 cut(s) 109, 315, 363, 478, 537, 669
DpnI GATC 1 cut(s) 516
DpnII GATC 1 cut(s) 514
Eam1104I CTCTTC 2 cut(s) 183, 285
EarI CTCTTC 2 cut(s) 183, 285
Eco130I CCWWGG 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 530
FaeI CATG 5 cut(s) 403, 509, 587, 794, 816
FaiI YATR 7 cut(s) 401, 463, 501, 507, 585, 792, 814
FatI CATG 5 cut(s) 399, 505, 583, 790, 812
FauI CCCGC 1 cut(s) 708
Fnu4HI GCNGC 4 cut(s) 145, 384, 450, 769
Fsp4HI GCNGC 4 cut(s) 145, 384, 450, 769
GluI GCNGC 4 cut(s) 145, 384, 450, 769
GsaI CCCAGC 1 cut(s) 812
HaeIII GGCC 2 cut(s) 175, 768
HapII CCGG 1 cut(s) 239
Hin1II CATG 5 cut(s) 403, 509, 587, 794, 816
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 5 cut(s) 59, 138, 256, 358, 603
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 1 cut(s) 255
Hpy188III TCNNGA 2 cut(s) 518, 791
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 3 cut(s) 330, 361, 717
HpyCH4III ACNGT 7 cut(s) 153, 166, 328, 439, 460, 524, 634
HpyCH4V TGCA 8 cut(s) 133, 144, 230, 281, 386, 416, 424, 430
HpyF10VI GCNNNNNNNGC 6 cut(s) 130, 316, 674, 712, 774, 783
HpyF3I CTNAG 6 cut(s) 109, 315, 363, 478, 537, 669
Hsp92II CATG 5 cut(s) 403, 509, 587, 794, 816
Kzo9I GATC 1 cut(s) 514
LguI GCTCTTC 1 cut(s) 285
Lsp1109I GCAGC 2 cut(s) 156, 370
LweI GCATC 3 cut(s) 28, 357, 403
MaeIII GTNAC 1 cut(s) 433
MalI GATC 1 cut(s) 516
MboI GATC 1 cut(s) 514
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 6 cut(s) 64, 197, 373, 573, 694, 759
MlyI GAGTC 4 cut(s) 132, 250, 367, 612
MmeI TCCRAC 1 cut(s) 529
Mph1103I ATGCAT 1 cut(s) 418
MseI TTAA 3 cut(s) 32, 690, 702
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 742
MspI CCGG 1 cut(s) 239
MunI CAATTG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 626
MwoI GCNNNNNNNGC 6 cut(s) 130, 316, 674, 712, 774, 783
NdeII GATC 1 cut(s) 514
NlaIII CATG 5 cut(s) 403, 509, 587, 794, 816
NlaIV GGNNCC 2 cut(s) 516, 767
NmuCI GTSAC 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 403
PaeI GCATGC 1 cut(s) 403
PagI TCATGA 1 cut(s) 790
PceI AGGCCT 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 400
PctI GAATGC 1 cut(s) 626
PfeI GAWTC 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 4 cut(s) 146, 385, 451, 770
PleI GAGTC 4 cut(s) 132, 250, 366, 611
PpsI GAGTC 4 cut(s) 132, 250, 366, 611
PspFI CCCAGC 1 cut(s) 808
PspN4I GGNNCC 2 cut(s) 516, 767
PspPI GGNCC 1 cut(s) 766
PstI CTGCAG 1 cut(s) 146
PsuI RGATCY 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 742
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
RseI CAYNNNNRTG 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 32, 690, 702
SatI GCNGC 4 cut(s) 145, 384, 450, 769
Sau3AI GATC 1 cut(s) 514
Sau96I GGNCC 1 cut(s) 766
SchI GAGTC 4 cut(s) 132, 250, 367, 612
SduI GDGCHC 1 cut(s) 297
SetI ASST 6 cut(s) 289, 337, 372, 471, 708, 744
SfaNI GCATC 3 cut(s) 28, 357, 403
SfcI CTRYAG 2 cut(s) 142, 324
SmiMI CAYNNNNRTG 1 cut(s) 504
SphI GCATGC 1 cut(s) 403
Sse9I AATT 6 cut(s) 64, 197, 373, 573, 694, 759
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 4 cut(s) 5, 450, 715, 769
StuI AGGCCT 1 cut(s) 175
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 7 cut(s) 153, 166, 328, 439, 460, 524, 634
TaqI TCGA 3 cut(s) 57, 209, 215
TasI AATT 6 cut(s) 64, 197, 373, 573, 694, 759
TauI GCSGC 2 cut(s) 452, 771
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 3 cut(s) 32, 690, 702
Tru9I TTAA 3 cut(s) 32, 690, 702
TscAI CASTG 2 cut(s) 393, 639
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 2 cut(s) 144, 383
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 3 cut(s) 170, 234, 807
TspGWI ACGGA 2 cut(s) 26, 240
TspRI CASTG 2 cut(s) 393, 639
XapI RAATTY 2 cut(s) 573, 694
XceI RCATGY 1 cut(s) 403
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.