RLG00000001980

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002533
Physical Location & Seq
Forward (+)
23883371 .. 23888730
5360 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001980

Sequence Viewer

Length: 933 bp
ATGACGGTTTTGCCCTTGATTTTTTCCCTTCAAAATTGCGCTCCCCATCTTTTGTTCTGCTATTTCCAATCAAAGTCCGTTTCAGGGAGAGAGTTCCAGCAGACAAAGAGTCATGATAGCTCATACTCAGGAGCCGTGATCAGTCAGTCTGCACTGCTAAAGCATAGCTTTCAGAGGCTTAAGGCGGAGTTCATAGTTTGTGGCCGTTGCGAAAACTCGGCAGGTGAAGAAGCCATGGTGGGTTGGCAGAGGCATCTCCACTCCTTAATCCGTCAAGTTGGGAAAACCCTCGAATCCAATTACACCCAATCTGCCTCCTTTTCTTCTTCTTCTTCTTCTCGCTTAGGGGAGGAACCGGTTTCATCTCCTTTGACTCCGCTTTTGACATCAACTTCTGCAAAAGCTGAAGAGCACAACCAGAAATCACTTACTAAGCCTTCTACGGTTCAAGCTATTCTAAAGGGCATCAAACAGAGTCCTAAGAAGGTCAATTTGGTTGCTGCACTGGTTCGTGGCATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACGGTCAAGAGAGCTGCAAAAACTGTATATCAGGTTATTCACTCAGCCAGAGCAAATGCAACTCATAATCATGGGCTGGATCCAGACCGTCTCCTTGTTGCTGAGGCGTTTGTTGGAAAGGGATACTACAAGAAAAGAATTTCCTACCATGCTAAAGGAAAATGTGGTGTCAAAATGAGACCAGAATGCCGACTGACGGTGGTAGTACGAGAGATTACCCCTGATGAGGAGGCAGAGATAGCCAAACTGAAAGTTAAGAATTTTGTTAAGCTCACCAAGCGGGAAAGAAGGCTTGTTCCTCATCAGCTGATTGAGACAACTTCAATTTGGGGCCGCAAAGGCAGGGGTCGCAATCATGAACCAAATGGTATCCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

311

Amino Acids

34.45

Weight (kDa)

9.94

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 151 - 254 2.1e-30 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 212
AciI CCGC 4 cut(s) 185, 377, 832, 886
AclWI GGATC 2 cut(s) 626, 639
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 2 cut(s) 690, 811
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 759
AfiI CCNNNNNNNGG 3 cut(s) 84, 748, 778
AflII CTTAAG 1 cut(s) 179
AgeI ACCGGT 1 cut(s) 355
AgsI TTSAA 4 cut(s) 32, 449, 527, 876
AhdI GACNNNNNGTC 1 cut(s) 108
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 7 cut(s) 120, 168, 404, 452, 566, 823, 859
AluI AGCT 7 cut(s) 120, 168, 404, 452, 566, 823, 859
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 3 cut(s) 647, 724, 860
AlwI GGATC 2 cut(s) 626, 639
AoxI GGCC 2 cut(s) 202, 883
ApeKI GCWGC 2 cut(s) 500, 566
ApoI RAATTY 2 cut(s) 690, 811
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AsiGI ACCGGT 1 cut(s) 355
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 883
AsuHPI GGTGA 2 cut(s) 236, 817
BamHI GGATCC 1 cut(s) 631
Bbv12I GWGCWC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 487, 553
BccI CCATC 1 cut(s) 54
BceAI ACGGC 2 cut(s) 119, 189
BciVI GTATCC 2 cut(s) 668, 932
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 647, 724, 860
BfrI CTTAAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 2 cut(s) 668, 932
BglI GCCNNNNNGGC 1 cut(s) 891
BisI GCNGC 3 cut(s) 501, 567, 886
BlsI GCNGC 3 cut(s) 502, 568, 887
BmeRI GACNNNNNGTC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 883
BmiI GGNNCC 4 cut(s) 133, 354, 633, 884
BmsI GCATC 3 cut(s) 262, 474, 520
Bpu10I CCTNAGC 2 cut(s) 343, 654
BsaI GGTCTC 1 cut(s) 724
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 748, 778
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 3 cut(s) 84, 748, 778
BseMII CTCAG 3 cut(s) 141, 609, 645
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 794
BseXI GCAGC 2 cut(s) 487, 553
BsgI GTGCAG 2 cut(s) 135, 486
BshFI GGCC 2 cut(s) 204, 885
BshTI ACCGGT 1 cut(s) 355
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 3 cut(s) 84, 748, 778
BsmAI GTCTC 3 cut(s) 647, 724, 860
BsmBI CGTCTC 1 cut(s) 647
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 2 cut(s) 204, 885
Bso31I GGTCTC 1 cut(s) 724
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 2 cut(s) 138, 631
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 4 cut(s) 185, 377, 832, 886
BspANI GGCC 2 cut(s) 204, 885
BspCNI CTCAG 3 cut(s) 140, 608, 646
BspHI TCATGA 2 cut(s) 112, 907
BspLI GGNNCC 4 cut(s) 133, 354, 633, 884
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 626, 639
BspQI GCTCTTC 1 cut(s) 402
BspTI CTTAAG 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 724
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 138, 631
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 6 cut(s) 7, 445, 556, 577, 641, 751
Bst6I CTCTTC 1 cut(s) 402
BstAFI CTTAAG 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 6 cut(s) 127, 343, 432, 480, 595, 654
BstDSI CCRYGG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 2 cut(s) 141, 634
BstMAI GTCTC 3 cut(s) 647, 724, 860
BstMBI GATC 2 cut(s) 138, 631
BstMWI GCNNNNNNNGC 4 cut(s) 791, 829, 891, 900
BstNSI RCATGY 1 cut(s) 520
BstV1I GCAGC 2 cut(s) 487, 553
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuI GTATCC 2 cut(s) 668, 932
BsuRI GGCC 2 cut(s) 204, 885
BtgI CCRYGG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 152, 503
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 518
CciI TCATGA 2 cut(s) 112, 907
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 883
Csp6I GTAC 1 cut(s) 758
CspAI ACCGGT 1 cut(s) 355
CviAII CATG 7 cut(s) 113, 235, 517, 623, 701, 908, 930
CviQI GTAC 1 cut(s) 758
DdeI CTNAG 6 cut(s) 127, 343, 432, 480, 595, 654
DpnI GATC 2 cut(s) 140, 633
DpnII GATC 2 cut(s) 138, 631
DriI GACNNNNNGTC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 402
Eam1105I GACNNNNNGTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 724
Eco57I CTGAAG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 535
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 7 cut(s) 116, 238, 520, 626, 704, 911, 933
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 7 cut(s) 112, 234, 516, 622, 700, 907, 929
FauI CCCGC 1 cut(s) 825
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 501, 567, 886
Fsp4HI GCNGC 3 cut(s) 501, 567, 886
GlaI GCGC 1 cut(s) 40
GluI GCNGC 3 cut(s) 501, 567, 886
HaeIII GGCC 2 cut(s) 204, 885
HapII CCGG 1 cut(s) 356
HhaI GCGC 1 cut(s) 41
Hin1II CATG 7 cut(s) 116, 238, 520, 626, 704, 911, 933
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 4 cut(s) 109, 293, 373, 475
HpaII CCGG 1 cut(s) 356
HphI GGTGA 2 cut(s) 236, 817
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 5 cut(s) 113, 129, 559, 635, 908
HpyAV CCTTC 4 cut(s) 38, 447, 478, 834
HpyCH4III ACNGT 6 cut(s) 7, 445, 556, 577, 641, 751
HpyCH4V TGCA 9 cut(s) 152, 398, 503, 533, 541, 547, 569, 611, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 791, 829, 891, 900
HpyF3I CTNAG 6 cut(s) 127, 343, 432, 480, 595, 654
Hsp92II CATG 7 cut(s) 116, 238, 520, 626, 704, 911, 933
HspAI GCGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 631
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 46, 131
Lsp1109I GCAGC 2 cut(s) 487, 553
LweI GCATC 3 cut(s) 262, 474, 520
MaeIII GTNAC 1 cut(s) 550
MalI GATC 2 cut(s) 140, 633
MboI GATC 2 cut(s) 138, 631
MboII GAAGA 8 cut(s) 239, 315, 318, 321, 324, 327, 419, 539
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 6 cut(s) 34, 298, 490, 690, 811, 876
MlyI GAGTC 3 cut(s) 118, 367, 484
MmeI TCCRAC 1 cut(s) 646
MnlI CCTC 9 cut(s) 168, 243, 299, 325, 343, 649, 772, 775, 861
Mph1103I ATGCAT 1 cut(s) 535
MseI TTAA 4 cut(s) 180, 266, 807, 819
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 859
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 743
MwoI GCNNNNNNNGC 4 cut(s) 791, 829, 891, 900
NcoI CCATGG 1 cut(s) 234
NdeII GATC 2 cut(s) 138, 631
NlaIII CATG 7 cut(s) 116, 238, 520, 626, 704, 911, 933
NlaIV GGNNCC 4 cut(s) 133, 354, 633, 884
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 535
NspI RCATGY 1 cut(s) 520
PaeI GCATGC 1 cut(s) 520
PagI TCATGA 2 cut(s) 112, 907
PaqCI CACCTGC 1 cut(s) 212
PciSI GCTCTTC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 517
PctI GAATGC 1 cut(s) 743
PfeI GAWTC 1 cut(s) 293
PinAI ACCGGT 1 cut(s) 355
PkrI GCNGC 3 cut(s) 502, 568, 887
PleI GAGTC 3 cut(s) 117, 367, 483
PpsI GAGTC 3 cut(s) 117, 367, 483
PspN4I GGNNCC 4 cut(s) 133, 354, 633, 884
PspPI GGNCC 1 cut(s) 883
PsuI RGATCY 1 cut(s) 631
PvuII CAGCTG 1 cut(s) 859
RsaI GTAC 1 cut(s) 759
RsaNI GTAC 1 cut(s) 758
RseI CAYNNNNRTG 1 cut(s) 621
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 4 cut(s) 180, 266, 807, 819
SatI GCNGC 3 cut(s) 501, 567, 886
Sau3AI GATC 2 cut(s) 138, 631
Sau96I GGNCC 1 cut(s) 883
SchI GAGTC 3 cut(s) 118, 367, 484
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 3 cut(s) 262, 474, 520
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SphI GCATGC 1 cut(s) 520
Sse9I AATT 6 cut(s) 34, 298, 490, 690, 811, 876
SsiI CCGC 4 cut(s) 185, 377, 832, 886
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 6 cut(s) 7, 445, 556, 577, 641, 751
TaqI TCGA 1 cut(s) 291
TasI AATT 6 cut(s) 34, 298, 490, 690, 811, 876
TauI GCSGC 1 cut(s) 888
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 4 cut(s) 180, 266, 807, 819
Tru9I TTAA 4 cut(s) 180, 266, 807, 819
TscAI CASTG 2 cut(s) 159, 510
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 2 cut(s) 500, 566
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 3 cut(s) 181, 351, 924
TspGWI ACGGA 2 cut(s) 67, 260
TspRI CASTG 2 cut(s) 159, 510
Vha464I CTTAAG 1 cut(s) 179
XapI RAATTY 2 cut(s) 690, 811
XceI RCATGY 1 cut(s) 520
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.