Rh7DG355300

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002533
Physical Location & Seq
Reverse (-)
47359639 .. 47362739
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG355300.1

Sequence Viewer

Length: 795 bp
ATGGCGGGGGGTTGGCAGAGGCATCTCCACTCCTTAATCCGTCGAGTATCCAATTACACCCAATCTGCCTCCTTTTCTTCTTCTTCTTCTTCTCGCTTAGGGGCTGGTTTGCCTTATCTGCAGAGACCATCTTCTCCTACCACTCCAAGGCCTCTTCATCACTACTTTCAACAATTGGGAATTTCGAGTTCGAGGAACAACTTACTTGCAGAGGAACCGGTTTCATCTCCTTTGACTCCGCTTTTGACATCAACTTCTGCAAAACCTGAAGAGCACAACCAGAAATCACTTACTAAGCCTTCTACGGTTCAAGCTATTCTAAAGGGCATCAAACAGAGTCCTAAGAAGGTCAATTTGGTTGCTGCACTGGTTCGTGGCATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACAGTAAAGAGAGCTGCAAAAACTGTATATCAGGTTATTCACTCAGCCAGAGCAAATGCAACTCATAATCATGGGCTGGATCCAGACCGTCTCCTTGTTGCTGAGGCATTTGTTGGAAAGGGATACTACAAGAAAAGAATTTCCTACCATGCTAAAGGAAAATGTGGAGTCAAAATGAGACCAGAATGCCGACTGACAGTGGTAGTACGGGAGATTACCCCTGACGAGGAGGCCGAGATAGCCAAACTGAAAGTTAAGAATTTTGTTAAGCTCACCAAGCGGGAAAGAAGGCTTGTTCCTCATCAGCTGATTGAGACAACTTCAATTTGGGGCCGCAAAGGCAAGGGTCGCAATCATGAACCAAATGGTATCCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

264

Amino Acids

29.34

Weight (kDa)

10.46

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 105 - 208 1.5e-30 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 239, 694, 748
AclWI GGATC 2 cut(s) 488, 501
AcsI RAATTY 3 cut(s) 180, 552, 673
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 1 cut(s) 621
AfiI CCNNNNNNNGG 2 cut(s) 147, 640
AgeI ACCGGT 1 cut(s) 217
AgsI TTSAA 4 cut(s) 170, 311, 389, 738
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 4 cut(s) 314, 428, 685, 721
AluI AGCT 4 cut(s) 314, 428, 685, 721
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 4 cut(s) 118, 509, 586, 722
AlwI GGATC 2 cut(s) 488, 501
AoxI GGCC 3 cut(s) 149, 645, 745
ApeKI GCWGC 2 cut(s) 362, 428
ApoI RAATTY 3 cut(s) 180, 552, 673
ArsI GACNNNNNNTTYG 2 cut(s) 226, 258
AsiGI ACCGGT 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 745
AsuHPI GGTGA 1 cut(s) 679
BamHI GGATCC 1 cut(s) 493
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 349, 415
BccI CCATC 1 cut(s) 136
BciVI GTATCC 3 cut(s) 58, 530, 794
BcoDI GTCTC 4 cut(s) 118, 509, 586, 722
BfmI CTRYAG 1 cut(s) 119
BfuI GTATCC 3 cut(s) 58, 530, 794
BglI GCCNNNNNGGC 1 cut(s) 753
BisI GCNGC 3 cut(s) 363, 429, 748
BlsI GCNGC 3 cut(s) 364, 430, 749
BmgT120I GGNCC 1 cut(s) 745
BmiI GGNNCC 3 cut(s) 216, 495, 746
BmsI GCATC 3 cut(s) 31, 336, 382
Bpu10I CCTNAGC 2 cut(s) 97, 516
BsaI GGTCTC 2 cut(s) 118, 586
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 640
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 147, 640
BseMII CTCAG 2 cut(s) 471, 507
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 656
BseXI GCAGC 2 cut(s) 349, 415
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 3 cut(s) 151, 647, 747
BshTI ACCGGT 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 147, 640
BsmAI GTCTC 4 cut(s) 118, 509, 586, 722
BsmBI CGTCTC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 3 cut(s) 151, 647, 747
Bso31I GGTCTC 2 cut(s) 118, 586
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 493
BspACI CCGC 4 cut(s) 5, 239, 694, 748
BspANI GGCC 3 cut(s) 151, 647, 747
BspCNI CTCAG 2 cut(s) 470, 508
BspHI TCATGA 1 cut(s) 769
BspLI GGNNCC 3 cut(s) 216, 495, 746
BspMAI CTGCAG 1 cut(s) 123
BspPI GGATC 2 cut(s) 488, 501
BspQI GCTCTTC 1 cut(s) 264
BspTNI GGTCTC 2 cut(s) 118, 586
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 1 cut(s) 493
BssT1I CCWWGG 1 cut(s) 146
Bst4CI ACNGT 5 cut(s) 307, 418, 439, 503, 613
Bst6I CTCTTC 2 cut(s) 159, 264
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 5 cut(s) 97, 294, 342, 457, 516
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 4 cut(s) 118, 509, 586, 722
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 5 cut(s) 118, 653, 691, 753, 762
BstNSI RCATGY 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 349, 415
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuI GTATCC 3 cut(s) 58, 530, 794
BsuRI GGCC 3 cut(s) 151, 647, 747
BtsIMutI CAGTG 2 cut(s) 365, 618
Cac8I GCNNGC 1 cut(s) 380
CciI TCATGA 1 cut(s) 769
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 745
Csp6I GTAC 1 cut(s) 620
CspAI ACCGGT 1 cut(s) 217
CviAII CATG 5 cut(s) 379, 485, 563, 770, 792
CviQI GTAC 1 cut(s) 620
DdeI CTNAG 5 cut(s) 97, 294, 342, 457, 516
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
Eam1104I CTCTTC 2 cut(s) 159, 264
EarI CTCTTC 2 cut(s) 159, 264
Eco130I CCWWGG 1 cut(s) 146
Eco147I AGGCCT 1 cut(s) 151
Eco31I GGTCTC 2 cut(s) 118, 586
Eco57I CTGAAG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 5 cut(s) 382, 488, 566, 773, 795
FaiI YATR 7 cut(s) 380, 442, 480, 486, 564, 771, 793
FatI CATG 5 cut(s) 378, 484, 562, 769, 791
FauI CCCGC 1 cut(s) 687
Fnu4HI GCNGC 3 cut(s) 363, 429, 748
Fsp4HI GCNGC 3 cut(s) 363, 429, 748
GluI GCNGC 3 cut(s) 363, 429, 748
HaeIII GGCC 3 cut(s) 151, 647, 747
HapII CCGG 1 cut(s) 218
Hin1II CATG 5 cut(s) 382, 488, 566, 773, 795
HinfI GANTC 3 cut(s) 235, 337, 582
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 679
Hpy188III TCNNGA 2 cut(s) 497, 770
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 3 cut(s) 309, 340, 696
HpyCH4III ACNGT 5 cut(s) 307, 418, 439, 503, 613
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 653, 691, 753, 762
HpyF3I CTNAG 5 cut(s) 97, 294, 342, 457, 516
Hsp92II CATG 5 cut(s) 382, 488, 566, 773, 795
Kzo9I GATC 1 cut(s) 493
LguI GCTCTTC 1 cut(s) 264
Lsp1109I GCAGC 2 cut(s) 349, 415
LweI GCATC 3 cut(s) 31, 336, 382
MaeIII GTNAC 1 cut(s) 412
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 9 cut(s) 69, 72, 75, 78, 81, 123, 146, 281, 401
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 7 cut(s) 52, 173, 180, 352, 552, 673, 738
MlyI GAGTC 3 cut(s) 229, 346, 591
MmeI TCCRAC 1 cut(s) 508
MnlI CCTC 9 cut(s) 12, 79, 162, 186, 205, 511, 634, 637, 723
Mph1103I ATGCAT 1 cut(s) 397
MseI TTAA 3 cut(s) 35, 669, 681
MslI CAYNNNNRTG 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 721
MspI CCGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 605
MwoI GCNNNNNNNGC 5 cut(s) 118, 653, 691, 753, 762
NdeII GATC 1 cut(s) 493
NlaIII CATG 5 cut(s) 382, 488, 566, 773, 795
NlaIV GGNNCC 3 cut(s) 216, 495, 746
NmeAIII GCCGAG 1 cut(s) 673
NmuCI GTSAC 1 cut(s) 412
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 1 cut(s) 382
PaeI GCATGC 1 cut(s) 382
PagI TCATGA 1 cut(s) 769
PceI AGGCCT 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 264
PcsI WCGNNNNNNNCGW 2 cut(s) 379, 645
PctI GAATGC 1 cut(s) 605
PinAI ACCGGT 1 cut(s) 217
PkrI GCNGC 3 cut(s) 364, 430, 749
PleI GAGTC 3 cut(s) 229, 345, 590
PpsI GAGTC 3 cut(s) 229, 345, 590
PspN4I GGNNCC 3 cut(s) 216, 495, 746
PspPI GGNCC 1 cut(s) 745
PstI CTGCAG 1 cut(s) 123
PsuI RGATCY 1 cut(s) 493
PvuII CAGCTG 1 cut(s) 721
RsaI GTAC 1 cut(s) 621
RsaNI GTAC 1 cut(s) 620
RseI CAYNNNNRTG 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 3 cut(s) 35, 669, 681
SatI GCNGC 3 cut(s) 363, 429, 748
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 1 cut(s) 745
SchI GAGTC 3 cut(s) 229, 346, 591
SduI GDGCHC 1 cut(s) 276
SetI ASST 7 cut(s) 268, 316, 351, 430, 450, 687, 723
SfaNI GCATC 3 cut(s) 31, 336, 382
SfcI CTRYAG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 483
SphI GCATGC 1 cut(s) 382
Sse9I AATT 7 cut(s) 52, 173, 180, 352, 552, 673, 738
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 4 cut(s) 5, 239, 694, 748
StuI AGGCCT 1 cut(s) 151
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 5 cut(s) 307, 418, 439, 503, 613
TaqI TCGA 3 cut(s) 43, 185, 191
TasI AATT 7 cut(s) 52, 173, 180, 352, 552, 673, 738
TauI GCSGC 1 cut(s) 750
Tru1I TTAA 3 cut(s) 35, 669, 681
Tru9I TTAA 3 cut(s) 35, 669, 681
TscAI CASTG 2 cut(s) 372, 618
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 362, 428
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 3 cut(s) 146, 213, 786
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 372, 618
XapI RAATTY 3 cut(s) 180, 552, 673
XceI RCATGY 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.