Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022781.1

Orthogroup ID

OG0002533

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2402

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 929 bp

gtcctgcactggtaaagcgtagagctctcccgactcggcaaacctgcaagagtgcaaggctagaaccagcaacccatctccggtgtccacctccgcctccaggtgaagaagccatggcgggttggcagaggcatctccactccttactccgtcaagttgggagaaccctcgaatccaattacacccaatctgcctccttttcttcttcgtcttcttcttgcttagaggctggtttgccttatttgcagagactctgcagcagaccgtcttctcctaccattccaaggcctcttcatcgctactttcaacaattggggatttcgagttcgaggaacttacttgcagaagaaccggtttcatctccgttgactcctcttttgacatcaacttctgcaaaagctgaagagcacaaccagaaatcgcttactaagccttctacagctcaagctatactaaagggcatcaaacagagtcctaagaaggtcaatttagttgctgcactggttcgtggcatgcgtgttgaagatgcattgttgcagttgcaagtgacggtaaagagagccgcaaaaactgtatatcaggttattcactcagccagagcaaacgcaactcataatcatgggctggatccagaccgtctccttgttgctgaggcatttgttggaaagggatactacaagaaaagaatttcctaccatgctaaaggaaaatgtggagtcaaaatgagaccagaatgccgactgacagtggtagtacgggagattacccctgacgaggaggccgagatagccaaactgaaagttaagaattttgttaagctcaccaagcgggaaagaaggcttgttcctcatcagctgattgagacaacttcaatttggggccgcaaaggcaagggtcgcaatcatgaaccaaatggtatccctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

308

Amino Acids

34.18

Weight (kDa)

10.31

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52370 AT1G52370 AT1G52370 AT1G52370 AT4G28360
fragaria_vesca	FvH4_6g20730 FvH4_6g20730
malus_domestica	MD12G1043300.v1.1 MD12G1043400.v1.1 MD14G1042400.v1.1
prunus_persica	Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1
pyrus_communis	pycom12g03740 pycom14g03610
rosa_chinensis	RchiOBHm_Chr3g0476631 RchiOBHm_Chr7g0223381
rosa_laevigata	RLG00000001980
rosa_multiflora	Rmu_sc0008241.1_g000012 Rmu_sc0009107.1_g000009 Rmu_sc0022781.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235860 Rroxscaffold_6G00405140
rosa_rugosa	Rorug03G0156000 Rorug03G0156000 Rorug03G0156000 Rorug03G0156100 Rorug03G0156200 Rorug07G0216400 Rorug07G0216400
rosa_samantha	Rh3AG206400 Rh3BG238800 Rh3CG232700 Rh3DG232700 Rh7AG360100 Rh7BG350100 Rh7CG378500 Rh7DG355300
rosa_wichuraiana	Rw3G018800 Rw7G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AciI	CCGC	5 cut(s)	94, 118, 563, 828, 882
AclWI	GGATC	2 cut(s)	622, 635
AcsI	RAATTY	2 cut(s)	686, 807
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	755
AfiI	CCNNNNNNNGG	4 cut(s)	80, 100, 284, 774
AgeI	ACCGGT	1 cut(s)	351
AgsI	TTSAA	3 cut(s)	307, 523, 872
AjnI	CCWGG	1 cut(s)	99
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	6 cut(s)	25, 400, 442, 448, 819, 855
AluI	AGCT	6 cut(s)	25, 400, 442, 448, 819, 855
Alw21I	GWGCWC	2 cut(s)	27, 410
Alw26I	GTCTC	4 cut(s)	243, 643, 720, 856
AlwI	GGATC	2 cut(s)	622, 635
AoxI	GGCC	3 cut(s)	286, 779, 879
ApeKI	GCWGC	2 cut(s)	257, 496
ApoI	RAATTY	2 cut(s)	686, 807
ArsI	GACNNNNNNTTYG	2 cut(s)	360, 392
AsiGI	ACCGGT	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	879
AsuHPI	GGTGA	2 cut(s)	115, 813
BamHI	GGATCC	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	2 cut(s)	203, 260
Bbv12I	GWGCWC	2 cut(s)	27, 410
BbvCI	CCTCAGC	1 cut(s)	650
BbvI	GCAGC	2 cut(s)	269, 483
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	101
BciVI	GTATCC	2 cut(s)	664, 928
BcoDI	GTCTC	4 cut(s)	243, 643, 720, 856
BfaI	CTAG	1 cut(s)	61
BfmI	CTRYAG	2 cut(s)	255, 437
BfuAI	ACCTGC	1 cut(s)	52
BfuI	GTATCC	2 cut(s)	664, 928
BglI	GCCNNNNNGGC	1 cut(s)	887
BisI	GCNGC	4 cut(s)	258, 497, 563, 882
BlsI	GCNGC	4 cut(s)	259, 498, 564, 883
Bme1390I	CCNGG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	879
BmiI	GGNNCC	2 cut(s)	629, 880
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	3 cut(s)	141, 470, 516
BpiI	GAAGAC	2 cut(s)	203, 260
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	113, 283
BsaWI	WCCGGW	2 cut(s)	80, 351
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 100, 284, 774
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	14, 506
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	113, 283
BseLI	CCNNNNNNNGG	4 cut(s)	80, 100, 284, 774
BseMII	CTCAG	2 cut(s)	605, 641
BseNI	ACTGG	2 cut(s)	14, 506
BseRI	GAGGAG	2 cut(s)	362, 790
BseXI	GCAGC	2 cut(s)	269, 483
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	3 cut(s)	288, 781, 881
BshTI	ACCGGT	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	27, 410
BsiSI	CCGG	2 cut(s)	81, 352
BslI	CCNNNNNNNGG	4 cut(s)	80, 100, 284, 774
BsmAI	GTCTC	4 cut(s)	243, 643, 720, 856
BsmBI	CGTCTC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	3 cut(s)	288, 781, 881
Bso31I	GGTCTC	1 cut(s)	720
Bsp1286I	GDGCHC	2 cut(s)	27, 410
Bsp143I	GATC	1 cut(s)	627
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	5 cut(s)	94, 118, 563, 828, 882
BspANI	GGCC	3 cut(s)	288, 781, 881
BspCNI	CTCAG	2 cut(s)	604, 642
BspHI	TCATGA	1 cut(s)	903
BspLI	GGNNCC	2 cut(s)	629, 880
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	622, 635
BspQI	GCTCTTC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	14, 506
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	113, 283
BssMI	GATC	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	113, 283
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	5 cut(s)	266, 552, 573, 637, 747
Bst6I	CTCTTC	2 cut(s)	296, 398
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	5 cut(s)	222, 428, 476, 591, 650
BstDSI	CCRYGG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	630
BstMAI	GTCTC	4 cut(s)	243, 643, 720, 856
BstMBI	GATC	1 cut(s)	627
BstMWI	GCNNNNNNNGC	6 cut(s)	243, 429, 787, 825, 887, 896
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	2 cut(s)	255, 437
BstV1I	GCAGC	2 cut(s)	269, 483
BstV2I	GAAGAC	2 cut(s)	203, 260
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
BsuI	GTATCC	2 cut(s)	664, 928
BsuRI	GGCC	3 cut(s)	288, 781, 881
BtgI	CCRYGG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	280
BtsIMutI	CAGTG	3 cut(s)	7, 499, 752
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	514
CciI	TCATGA	1 cut(s)	903
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	879
Csp6I	GTAC	1 cut(s)	754
CspAI	ACCGGT	1 cut(s)	351
CviAII	CATG	6 cut(s)	114, 513, 619, 697, 904, 926
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	5 cut(s)	222, 428, 476, 591, 650
DpnI	GATC	1 cut(s)	629
DpnII	GATC	1 cut(s)	627
Eam1104I	CTCTTC	2 cut(s)	296, 398
EarI	CTCTTC	2 cut(s)	296, 398
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	113, 283
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	720
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	2 cut(s)	113, 283
EcoT22I	ATGCAT	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	113, 283
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	6 cut(s)	117, 516, 622, 700, 907, 929
FaiI	YATR	9 cut(s)	115, 451, 514, 576, 614, 620, 698, 905, 927
FatI	CATG	6 cut(s)	113, 512, 618, 696, 903, 925
FauI	CCCGC	2 cut(s)	111, 821
Fnu4HI	GCNGC	4 cut(s)	258, 497, 563, 882
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	4 cut(s)	258, 497, 563, 882
FspBI	CTAG	1 cut(s)	61
GluI	GCNGC	4 cut(s)	258, 497, 563, 882
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	288, 781, 881
HapII	CCGG	2 cut(s)	81, 352
Hin1II	CATG	6 cut(s)	117, 516, 622, 700, 907, 929
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HinfI	GANTC	6 cut(s)	33, 172, 251, 369, 471, 716
HpaII	CCGG	2 cut(s)	81, 352
HphI	GGTGA	2 cut(s)	115, 813
Hpy166II	GTNNAC	2 cut(s)	88, 368
Hpy188III	TCNNGA	3 cut(s)	30, 631, 904
Hpy8I	GTNNAC	2 cut(s)	88, 368
HpyAV	CCTTC	3 cut(s)	443, 474, 830
HpyCH4III	ACNGT	5 cut(s)	266, 552, 573, 637, 747
HpyF10VI	GCNNNNNNNGC	6 cut(s)	243, 429, 787, 825, 887, 896
HpyF3I	CTNAG	5 cut(s)	222, 428, 476, 591, 650
Hsp92II	CATG	6 cut(s)	117, 516, 622, 700, 907, 929
Kzo9I	GATC	1 cut(s)	627
LguI	GCTCTTC	1 cut(s)	398
Lsp1109I	GCAGC	2 cut(s)	269, 483
LweI	GCATC	3 cut(s)	141, 470, 516
MaeI	CTAG	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	1 cut(s)	629
MboI	GATC	1 cut(s)	627
MfeI	CAATTG	1 cut(s)	310
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	2 cut(s)	27, 410
MluCI	AATT	6 cut(s)	177, 310, 486, 686, 807, 872
MlyI	GAGTC	5 cut(s)	27, 245, 363, 480, 725
MmeI	TCCRAC	1 cut(s)	642
Mph1103I	ATGCAT	1 cut(s)	531
MseI	TTAA	2 cut(s)	803, 815
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	855
MspI	CCGG	2 cut(s)	81, 352
MspR9I	CCNGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	6 cut(s)	243, 429, 787, 825, 887, 896
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	627
NlaIII	CATG	6 cut(s)	117, 516, 622, 700, 907, 929
NlaIV	GGNNCC	2 cut(s)	629, 880
NmeAIII	GCCGAG	2 cut(s)	15, 807
NmuCI	GTSAC	1 cut(s)	546
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	1 cut(s)	516
PaeI	GCATGC	1 cut(s)	516
PagI	TCATGA	1 cut(s)	903
PceI	AGGCCT	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	513, 779
PctI	GAATGC	1 cut(s)	739
PfeI	GAWTC	1 cut(s)	172
PinAI	ACCGGT	1 cut(s)	351
PkrI	GCNGC	4 cut(s)	259, 498, 564, 883
PleI	GAGTC	5 cut(s)	27, 245, 363, 479, 724
PpsI	GAGTC	5 cut(s)	27, 245, 363, 479, 724
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	629, 880
PspPI	GGNCC	1 cut(s)	879
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	627
PvuII	CAGCTG	1 cut(s)	855
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	803, 815
SatI	GCNGC	4 cut(s)	258, 497, 563, 882
Sau3AI	GATC	1 cut(s)	627
Sau96I	GGNCC	1 cut(s)	879
SchI	GAGTC	5 cut(s)	27, 245, 363, 480, 725
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	27, 410
SfaNI	GCATC	3 cut(s)	141, 470, 516
SfcI	CTRYAG	2 cut(s)	255, 437
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	1 cut(s)	516
Sse9I	AATT	6 cut(s)	177, 310, 486, 686, 807, 872
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	5 cut(s)	94, 118, 563, 828, 882
SspMI	CTAG	1 cut(s)	61
SstI	GAGCTC	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	2 cut(s)	113, 283
TaaI	ACNGT	5 cut(s)	266, 552, 573, 637, 747
TaqI	TCGA	3 cut(s)	170, 322, 328
TasI	AATT	6 cut(s)	177, 310, 486, 686, 807, 872
TauI	GCSGC	2 cut(s)	565, 884
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	803, 815
Tru9I	TTAA	2 cut(s)	803, 815
TscAI	CASTG	3 cut(s)	14, 506, 752
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	2 cut(s)	257, 496
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	3 cut(s)	283, 347, 920
TspGWI	ACGGA	2 cut(s)	139, 353
TspRI	CASTG	3 cut(s)	14, 506, 752
XapI	RAATTY	2 cut(s)	686, 807
XceI	RCATGY	1 cut(s)	516
XspI	CTAG	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.