Rroxscaffold_3G00235860

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002533
Physical Location & Seq
Forward (+)
23053071 .. 23055743
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235860.1

Sequence Viewer

Length: 804 bp
ATGGCGGGTTGGCAGAGGCATCTCCACTGCTTAATCCGTCAAGTATCCAATTACACCCAATCTGCCTCCTTTTCTTCTTCTTCTTCTTCTCGCTTACAGGCTGGTTTGCCTTATTTGCAGAGACTCTGCAGCAGACCATCTTCTCCTACCATTCCAAGGCCTCTTCATTACTACTTTCAACAATTGGGAATTTCGAGTTCGAGGAACAACTTACTTGCAGAGGAACCGGTTTCATCTCCTTTGACTCCGCTTTCGACATCAACTTCTGCAAATGCTCAAGAGCACAACCAGAAATCACTTACTAAGCCTTCTACGGTTCAAGCTATTCTAAAGGGCATCAAACAGAGTCCTAAGAAGGTCAATTTGGTTGCTGCACTGGTTCGTGGCATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACAGTAAAGAGAGCTGCAAAAACTGTATATCAGGTTATTCACTCAGCCAGAGCAAATGCAACTCATAATCATGGGCTGGTTCCAGACCGTCTCCTTGTTGCTGAGGCATTTGTTGGAAAGGGATACTACAAGAAAAGAATTTCCTACCATGCTAAAGGAAAATGTGGAGTCAAAATGAGACCAGAATGCCGACTGACAGTGGTAGTATGGGAGATTACCCCTGACGAGGAGGCCGAGATAGCCAAACTGAAAGTTAAGAATTTTGTTAAGCTCACCAAGCGGGAAAGAAGGCTTGTTCCTCATCAGCTAATTGAGACAACTTCAATTTGGGGCCGCAAAGGCAAGGGTCGCATTCATGAACCAAATGGTATCCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

267

Amino Acids

29.78

Weight (kDa)

10.33

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 108 - 210 5.1e-29 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 248, 703, 757
AcsI RAATTY 3 cut(s) 189, 561, 682
AfiI CCNNNNNNNGG 2 cut(s) 156, 649
AgeI ACCGGT 1 cut(s) 226
AgsI TTSAA 4 cut(s) 179, 320, 398, 747
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 4 cut(s) 323, 437, 694, 730
AluI AGCT 4 cut(s) 323, 437, 694, 730
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 4 cut(s) 115, 518, 595, 731
AoxI GGCC 3 cut(s) 158, 654, 754
ApeKI GCWGC 3 cut(s) 129, 371, 437
ApoI RAATTY 3 cut(s) 189, 561, 682
ArsI GACNNNNNNTTYG 2 cut(s) 235, 267
AsiGI ACCGGT 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 754
AsuHPI GGTGA 1 cut(s) 688
Bbv12I GWGCWC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 3 cut(s) 141, 358, 424
BccI CCATC 1 cut(s) 145
BciVI GTATCC 3 cut(s) 55, 539, 803
BcoDI GTCTC 4 cut(s) 115, 518, 595, 731
BfmI CTRYAG 1 cut(s) 127
BfuI GTATCC 3 cut(s) 55, 539, 803
BglI GCCNNNNNGGC 1 cut(s) 762
BisI GCNGC 4 cut(s) 130, 372, 438, 757
BlsI GCNGC 4 cut(s) 131, 373, 439, 758
BmgT120I GGNCC 1 cut(s) 754
BmiI GGNNCC 3 cut(s) 225, 504, 755
BmsI GCATC 3 cut(s) 28, 345, 391
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 649
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 156, 649
BseMII CTCAG 2 cut(s) 480, 516
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 3 cut(s) 141, 358, 424
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 160, 656, 756
BshTI ACCGGT 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 156, 649
BsmAI GTCTC 4 cut(s) 115, 518, 595, 731
BsmBI CGTCTC 1 cut(s) 518
BsmI GAATGC 2 cut(s) 614, 774
BsnI GGCC 3 cut(s) 160, 656, 756
Bso31I GGTCTC 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 285
BspACI CCGC 4 cut(s) 5, 248, 703, 757
BspANI GGCC 3 cut(s) 160, 656, 756
BspCNI CTCAG 2 cut(s) 479, 517
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 3 cut(s) 225, 504, 755
BspMAI CTGCAG 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 595
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 155
Bst4CI ACNGT 5 cut(s) 316, 427, 448, 512, 622
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 389
BstDEI CTNAG 4 cut(s) 303, 351, 466, 525
BstMAI GTCTC 4 cut(s) 115, 518, 595, 731
BstMWI GCNNNNNNNGC 5 cut(s) 115, 662, 700, 762, 771
BstNSI RCATGY 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 3 cut(s) 141, 358, 424
BsuI GTATCC 3 cut(s) 55, 539, 803
BsuRI GGCC 3 cut(s) 160, 656, 756
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 25, 374, 627
Cac8I GCNNGC 1 cut(s) 389
CciI TCATGA 1 cut(s) 778
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 754
CspAI ACCGGT 1 cut(s) 226
CviAII CATG 5 cut(s) 388, 494, 572, 779, 801
DdeI CTNAG 4 cut(s) 303, 351, 466, 525
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 155
Eco147I AGGCCT 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 5 cut(s) 391, 497, 575, 782, 804
FaiI YATR 8 cut(s) 389, 451, 489, 495, 573, 631, 780, 802
FatI CATG 5 cut(s) 387, 493, 571, 778, 800
FauI CCCGC 1 cut(s) 696
Fnu4HI GCNGC 4 cut(s) 130, 372, 438, 757
Fsp4HI GCNGC 4 cut(s) 130, 372, 438, 757
GluI GCNGC 4 cut(s) 130, 372, 438, 757
HaeIII GGCC 3 cut(s) 160, 656, 756
HapII CCGG 1 cut(s) 227
Hin1II CATG 5 cut(s) 391, 497, 575, 782, 804
HinfI GANTC 4 cut(s) 123, 244, 346, 591
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 688
Hpy188III TCNNGA 3 cut(s) 278, 506, 779
HpyAV CCTTC 3 cut(s) 318, 349, 705
HpyCH4III ACNGT 5 cut(s) 316, 427, 448, 512, 622
HpyF10VI GCNNNNNNNGC 5 cut(s) 115, 662, 700, 762, 771
HpyF3I CTNAG 4 cut(s) 303, 351, 466, 525
Hsp92II CATG 5 cut(s) 391, 497, 575, 782, 804
Lsp1109I GCAGC 3 cut(s) 141, 358, 424
LweI GCATC 3 cut(s) 28, 345, 391
MaeIII GTNAC 1 cut(s) 421
MboII GAAGA 8 cut(s) 66, 69, 72, 75, 78, 132, 155, 410
MfeI CAATTG 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 8 cut(s) 49, 182, 189, 361, 561, 682, 732, 747
MlyI GAGTC 4 cut(s) 117, 238, 355, 600
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 9 cut(s) 9, 76, 171, 195, 214, 520, 643, 646, 732
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 3 cut(s) 32, 678, 690
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 1 cut(s) 227
MunI CAATTG 1 cut(s) 182
Mva1269I GAATGC 2 cut(s) 614, 774
MwoI GCNNNNNNNGC 5 cut(s) 115, 662, 700, 762, 771
NlaIII CATG 5 cut(s) 391, 497, 575, 782, 804
NlaIV GGNNCC 3 cut(s) 225, 504, 755
NmeAIII GCCGAG 1 cut(s) 682
NmuCI GTSAC 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 391
PaeI GCATGC 1 cut(s) 391
PagI TCATGA 1 cut(s) 778
PceI AGGCCT 1 cut(s) 160
PcsI WCGNNNNNNNCGW 2 cut(s) 388, 654
PctI GAATGC 2 cut(s) 614, 774
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 4 cut(s) 131, 373, 439, 758
PleI GAGTC 4 cut(s) 117, 238, 354, 599
PpsI GAGTC 4 cut(s) 117, 238, 354, 599
PspN4I GGNNCC 3 cut(s) 225, 504, 755
PspPI GGNCC 1 cut(s) 754
PstI CTGCAG 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 3 cut(s) 32, 678, 690
SatI GCNGC 4 cut(s) 130, 372, 438, 757
Sau96I GGNCC 1 cut(s) 754
SchI GAGTC 4 cut(s) 117, 238, 355, 600
SduI GDGCHC 1 cut(s) 285
SetI ASST 6 cut(s) 325, 360, 439, 459, 696, 732
SfaNI GCATC 3 cut(s) 28, 345, 391
SfcI CTRYAG 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
SphI GCATGC 1 cut(s) 391
Sse9I AATT 8 cut(s) 49, 182, 189, 361, 561, 682, 732, 747
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 4 cut(s) 5, 248, 703, 757
StuI AGGCCT 1 cut(s) 160
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 5 cut(s) 316, 427, 448, 512, 622
TaqI TCGA 3 cut(s) 194, 200, 254
TasI AATT 8 cut(s) 49, 182, 189, 361, 561, 682, 732, 747
TauI GCSGC 1 cut(s) 759
Tru1I TTAA 3 cut(s) 32, 678, 690
Tru9I TTAA 3 cut(s) 32, 678, 690
TscAI CASTG 3 cut(s) 32, 381, 627
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 3 cut(s) 129, 371, 437
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 4 cut(s) 155, 222, 767, 795
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 3 cut(s) 32, 381, 627
XapI RAATTY 3 cut(s) 189, 561, 682
XceI RCATGY 1 cut(s) 391
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.