FvH4_6g20730

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002533
Physical Location & Seq
Reverse (-)
14292906 .. 14295875
2970 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20730.t1

Sequence Viewer

Length: 819 bp
ATGGTGGGTTGGCAGAGGCATCTCCACTCCTTAATCCGTCAAGTTGGGAAAACCCTCGAACGAAATCACACCCAATCCGCCGCCTTTTCTTCTTCTTCTTCGTCTTCTCGCTTAGAGAATGGGTTGCCTTATCTGCAGAGACTCTGCAGCAGGCAATCTTCTCCAACCATTGCAAGGCCTCTTCATCAGTACTTTCAACAATTGGGAATTTCGAGTTCAAGGAGCTTACTAGCAGAAGAGCCGGTTTCGTCGCCGTTGAGACCTCTTTTGACATCTAGTACTGCAAAAACTGAAGAGCACAACCAGAAATCACTTACTAAACCTGCTACGGTTCAAGCTATTCTAAAGGGCATCAAACAGAGTCCTAAGAAGGTCAATTTGGTTGCTGCACTGGTGCGTGGAATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACAGTGAAGAGAGCTGCAAAAACTGTGTATCAGGTTATTCATTCAGCCCGAGCGAATGCAACTCATAATCATGGGCTCGATCCAGACCGTCTCCTTGTTGCTGAGGCATTTGTTGGAAAGGGATACTACAAGAAACGAATCAACCCCCATGCTAAAGGAAAATCTGGAATTATAATGAGACCAGAATGCCGGCTGACAGTGGTAGTACGGGAGATTACCCCTGACGAGGAGGCAGAGATTGCCAAACTGAAAGTTAAGAATTTTGTGAAGCTCACCAAGCGGGAAAGAAGGCTTGTTCCTCATCAGTTGATTGAGACAACTTCAATTTGGGGTCGCAAAGGCAAGGGTCACAATCATGAATCGAATCGTATGGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

273

Amino Acids

30.41

Weight (kDa)

10.57

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 113 - 216 1.1e-31 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
Acc36I ACCTGC 1 cut(s) 331
AciI CCGC 3 cut(s) 78, 81, 718
AclWI GGATC 1 cut(s) 512
AcsI RAATTY 2 cut(s) 207, 697
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 3 cut(s) 191, 280, 645
AfiI CCNNNNNNNGG 2 cut(s) 174, 664
AgsI TTSAA 5 cut(s) 197, 219, 335, 413, 762
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 4 cut(s) 225, 338, 452, 709
AluI AGCT 4 cut(s) 225, 338, 452, 709
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 5 cut(s) 133, 253, 533, 610, 746
AlwI GGATC 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 486
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 4 cut(s) 147, 386, 452, 812
ApoI RAATTY 2 cut(s) 207, 697
AsuHPI GGTGA 1 cut(s) 703
AvaI CYCGRG 1 cut(s) 486
BanII GRGCYC 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 4 cut(s) 159, 373, 439, 799
BceAI ACGGC 1 cut(s) 238
BciVI GTATCC 1 cut(s) 554
BcoDI GTCTC 5 cut(s) 133, 253, 533, 610, 746
BfaI CTAG 2 cut(s) 230, 276
BfmI CTRYAG 2 cut(s) 134, 145
BfuAI ACCTGC 1 cut(s) 331
BfuI GTATCC 1 cut(s) 554
BisI GCNGC 5 cut(s) 81, 148, 387, 453, 813
BlsI GCNGC 5 cut(s) 82, 149, 388, 454, 814
BmcAI AGTACT 2 cut(s) 191, 280
BmeT110I CYCGRG 1 cut(s) 486
BmsI GCATC 3 cut(s) 28, 360, 406
BpiI GAAGAC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 540
BsaI GGTCTC 2 cut(s) 253, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 664
Bse118I RCCGGY 2 cut(s) 241, 627
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 174, 664
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 680
BseXI GCAGC 4 cut(s) 159, 373, 439, 799
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 2 cut(s) 242, 628
BslI CCNNNNNNNGG 2 cut(s) 174, 664
BsmAI GTCTC 5 cut(s) 133, 253, 533, 610, 746
BsmBI CGTCTC 1 cut(s) 533
BsmI GAATGC 3 cut(s) 408, 499, 629
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 2 cut(s) 253, 610
BsoBI CYCGRG 1 cut(s) 486
Bsp1286I GDGCHC 2 cut(s) 300, 516
Bsp143I GATC 1 cut(s) 517
BspACI CCGC 3 cut(s) 78, 81, 718
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 532
BspHI TCATGA 1 cut(s) 793
BspMAI CTGCAG 2 cut(s) 138, 149
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 1 cut(s) 512
BspQI GCTCTTC 2 cut(s) 231, 288
BspTNI GGTCTC 2 cut(s) 253, 610
BsrDI GCAATG 1 cut(s) 168
BsrFI RCCGGY 2 cut(s) 241, 627
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 2 cut(s) 241, 627
BssMI GATC 1 cut(s) 517
Bst4CI ACNGT 5 cut(s) 331, 442, 463, 527, 637
Bst6I CTCTTC 4 cut(s) 186, 231, 288, 440
BstAPI GCANNNNNTGC 1 cut(s) 677
BstC8I GCNNGC 2 cut(s) 152, 629
BstDEI CTNAG 3 cut(s) 112, 366, 540
BstKTI GATC 1 cut(s) 520
BstMAI GTCTC 5 cut(s) 133, 253, 533, 610, 746
BstMBI GATC 1 cut(s) 517
BstMWI GCNNNNNNNGC 4 cut(s) 133, 403, 677, 715
BstSFI CTRYAG 2 cut(s) 134, 145
BstV1I GCAGC 4 cut(s) 159, 373, 439, 799
BstV2I GAAGAC 1 cut(s) 96
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 1 cut(s) 178
BtsIMutI CAGTG 3 cut(s) 389, 447, 642
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 152, 629
CciI TCATGA 1 cut(s) 793
Cfr10I RCCGGY 2 cut(s) 241, 627
Csp6I GTAC 3 cut(s) 190, 279, 644
CviAII CATG 3 cut(s) 509, 587, 794
CviQI GTAC 3 cut(s) 190, 279, 644
DdeI CTNAG 3 cut(s) 112, 366, 540
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
Eam1104I CTCTTC 4 cut(s) 186, 231, 288, 440
EarI CTCTTC 4 cut(s) 186, 231, 288, 440
EciI GGCGGA 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 516
Eco31I GGTCTC 2 cut(s) 253, 610
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 486
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 533
FaeI CATG 3 cut(s) 512, 590, 797
FaiI YATR 7 cut(s) 504, 510, 588, 611, 795, 809, 817
FatI CATG 3 cut(s) 508, 586, 793
FauI CCCGC 1 cut(s) 711
Fnu4HI GCNGC 5 cut(s) 81, 148, 387, 453, 813
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 5 cut(s) 81, 148, 387, 453, 813
FspBI CTAG 2 cut(s) 230, 276
GluI GCNGC 5 cut(s) 81, 148, 387, 453, 813
HaeIII GGCC 1 cut(s) 178
HapII CCGG 2 cut(s) 242, 628
Hin1II CATG 3 cut(s) 512, 590, 797
HinfI GANTC 5 cut(s) 141, 361, 576, 797, 802
HpaII CCGG 2 cut(s) 242, 628
HphI GGTGA 1 cut(s) 703
Hpy188III TCNNGA 3 cut(s) 521, 603, 794
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 364, 720
HpyCH4III ACNGT 5 cut(s) 331, 442, 463, 527, 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 403, 677, 715
HpyF3I CTNAG 3 cut(s) 112, 366, 540
Hsp92II CATG 3 cut(s) 512, 590, 797
KroI GCCGGC 1 cut(s) 627
KroNI GCCGGC 1 cut(s) 629
Kzo9I GATC 1 cut(s) 517
LguI GCTCTTC 2 cut(s) 231, 288
LmnI GCTCC 1 cut(s) 222
Lsp1109I GCAGC 4 cut(s) 159, 373, 439, 799
LweI GCATC 3 cut(s) 28, 360, 406
MaeI CTAG 2 cut(s) 230, 276
MaeIII GTNAC 2 cut(s) 436, 785
MalI GATC 1 cut(s) 519
MboI GATC 1 cut(s) 517
MfeI CAATTG 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 300, 516
MluCI AATT 6 cut(s) 200, 207, 376, 606, 697, 762
MlyI GAGTC 2 cut(s) 135, 370
MmeI TCCRAC 2 cut(s) 188, 532
MnlI CCTC 8 cut(s) 9, 65, 189, 273, 535, 658, 661, 747
Mph1103I ATGCAT 1 cut(s) 421
MroNI GCCGGC 1 cut(s) 627
MseI TTAA 2 cut(s) 32, 693
MslI CAYNNNNRTG 2 cut(s) 507, 792
MspI CCGG 2 cut(s) 242, 628
MunI CAATTG 1 cut(s) 200
Mva1269I GAATGC 3 cut(s) 408, 499, 629
MwoI GCNNNNNNNGC 4 cut(s) 133, 403, 677, 715
NaeI GCCGGC 1 cut(s) 629
NdeII GATC 1 cut(s) 517
NgoMIV GCCGGC 1 cut(s) 627
NlaIII CATG 3 cut(s) 512, 590, 797
NmuCI GTSAC 2 cut(s) 436, 785
NsiI ATGCAT 1 cut(s) 421
PagI TCATGA 1 cut(s) 793
PceI AGGCCT 1 cut(s) 178
PciSI GCTCTTC 2 cut(s) 231, 288
PctI GAATGC 3 cut(s) 408, 499, 629
PdiI GCCGGC 1 cut(s) 629
PfeI GAWTC 3 cut(s) 576, 797, 802
PkrI GCNGC 5 cut(s) 82, 149, 388, 454, 814
PleI GAGTC 2 cut(s) 135, 369
PpsI GAGTC 2 cut(s) 135, 369
PsiI TTATAA 1 cut(s) 611
PstI CTGCAG 2 cut(s) 138, 149
RsaI GTAC 3 cut(s) 191, 280, 645
RsaNI GTAC 3 cut(s) 190, 279, 644
RseI CAYNNNNRTG 2 cut(s) 507, 792
SapI GCTCTTC 2 cut(s) 231, 288
SaqAI TTAA 2 cut(s) 32, 693
SatI GCNGC 5 cut(s) 81, 148, 387, 453, 813
Sau3AI GATC 1 cut(s) 517
ScaI AGTACT 2 cut(s) 191, 280
SchI GAGTC 2 cut(s) 135, 370
SduI GDGCHC 2 cut(s) 300, 516
SetI ASST 8 cut(s) 227, 265, 325, 340, 375, 454, 474, 711
SfaNI GCATC 3 cut(s) 28, 360, 406
SfcI CTRYAG 2 cut(s) 134, 145
SmiMI CAYNNNNRTG 2 cut(s) 507, 792
Sse9I AATT 6 cut(s) 200, 207, 376, 606, 697, 762
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 3 cut(s) 78, 81, 718
SspMI CTAG 2 cut(s) 230, 276
StuI AGGCCT 1 cut(s) 178
TaaI ACNGT 5 cut(s) 331, 442, 463, 527, 637
TaqI TCGA 4 cut(s) 57, 212, 516, 800
TasI AATT 6 cut(s) 200, 207, 376, 606, 697, 762
TatI WGTACW 2 cut(s) 189, 278
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 3 cut(s) 576, 797, 802
Tru1I TTAA 2 cut(s) 32, 693
Tru9I TTAA 2 cut(s) 32, 693
TscAI CASTG 3 cut(s) 396, 447, 642
TseFI GTSAC 2 cut(s) 436, 785
TseI GCWGC 4 cut(s) 147, 386, 452, 812
Tsp45I GTSAC 2 cut(s) 436, 785
TspDTI ATGAA 3 cut(s) 173, 467, 810
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 3 cut(s) 396, 447, 642
XapI RAATTY 2 cut(s) 207, 697
XspI CTAG 2 cut(s) 230, 276
ZrmI AGTACT 2 cut(s) 191, 280
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.