Rw7G030600

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002533
Physical Location & Seq
Reverse (-)
43435185 .. 43437153
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030600.1

Sequence Viewer

Length: 786 bp
ATGGCGGGGGGTTGGCAGAGGCATCTCCACTCCTTAATCCGTCGAGTATCCAATTACACCCAATCTGCCTCCTTTTCTTCTTCTCGCTTAGGGGCTGGTTTGCCTTATCTGCAGAGACCATCTTCTCCTACCACTCCAAGGCCTCTTCATCACTACTTTCAACAATTGGGAATTTCGAGTTCGAGGAACAACTTACTTGCAGAGGAACCGGTTTCATCTCCTTTGACTCCGCTTTTGACATCAACTTCTGCAAAACCTGAAGAGCACAACCAGAAATCACTTACTAAGCCTTCTACGGTTCAAGCTATTCTAAAGGGCATCAAACAGAGTCCTAAGAAGGTCAATTTGGTTGCTGCACTGGTTCGTGGCATGCGTGCTGAAGATGCATTGTTGCAGTTGCAAGTGACAGTAAAGAGAGCTGCAAAAACTGTATATCAGGTTATTCACTCAGCCAGAGCAAATGCAACTCATAATCATGGGCTGGATCCAGACCGTCTCCTTGTTGCTGAGGCATTTGTTGGAAAGGGATACTACAAGAAAAGAATTTCCTACCATGCTAAAGGAAAATGTGGAGTCAAAATGAGACCAGAATGCCGACTGACAGTGGTAGTACGGGAGATTACCCCTGACGAGGAGGCCGAGATAGCCAAACTGAAAGTTAAGAATTTTGTTAAGCTCACCAAGCGGGAAAGAAGGCTTGTTCCTCATCAGCTGATTGAGACAACTTCAATTTGGGGCCGCAAAGGCAAGGGTCGCAATCATGAACCAAATGGTATCCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

261

Amino Acids

29.05

Weight (kDa)

10.46

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 102 - 205 4.3e-30 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 230, 685, 739
AclWI GGATC 2 cut(s) 479, 492
AcsI RAATTY 3 cut(s) 171, 543, 664
AcuI CTGAAG 2 cut(s) 279, 399
AfaI GTAC 1 cut(s) 612
AfiI CCNNNNNNNGG 2 cut(s) 138, 631
AgeI ACCGGT 1 cut(s) 208
AgsI TTSAA 3 cut(s) 161, 302, 729
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 4 cut(s) 305, 419, 676, 712
AluI AGCT 4 cut(s) 305, 419, 676, 712
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 4 cut(s) 109, 500, 577, 713
AlwI GGATC 2 cut(s) 479, 492
AoxI GGCC 3 cut(s) 140, 636, 736
ApeKI GCWGC 2 cut(s) 353, 419
ApoI RAATTY 3 cut(s) 171, 543, 664
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
AsiGI ACCGGT 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 736
AsuHPI GGTGA 1 cut(s) 670
BamHI GGATCC 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 267
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 340, 406
BccI CCATC 1 cut(s) 127
BciVI GTATCC 3 cut(s) 58, 521, 785
BcoDI GTCTC 4 cut(s) 109, 500, 577, 713
BfmI CTRYAG 1 cut(s) 110
BfuI GTATCC 3 cut(s) 58, 521, 785
BglI GCCNNNNNGGC 1 cut(s) 744
BisI GCNGC 3 cut(s) 354, 420, 739
BlsI GCNGC 3 cut(s) 355, 421, 740
BmgT120I GGNCC 1 cut(s) 736
BmiI GGNNCC 3 cut(s) 207, 486, 737
BmsI GCATC 3 cut(s) 31, 327, 373
Bpu10I CCTNAGC 2 cut(s) 88, 507
BsaI GGTCTC 2 cut(s) 109, 577
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 631
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 138, 631
BseMII CTCAG 2 cut(s) 462, 498
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 1 cut(s) 647
BseXI GCAGC 2 cut(s) 340, 406
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 3 cut(s) 142, 638, 738
BshTI ACCGGT 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 138, 631
BsmAI GTCTC 4 cut(s) 109, 500, 577, 713
BsmBI CGTCTC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 596
BsnI GGCC 3 cut(s) 142, 638, 738
Bso31I GGTCTC 2 cut(s) 109, 577
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 484
BspACI CCGC 4 cut(s) 5, 230, 685, 739
BspANI GGCC 3 cut(s) 142, 638, 738
BspCNI CTCAG 2 cut(s) 461, 499
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 3 cut(s) 207, 486, 737
BspMAI CTGCAG 1 cut(s) 114
BspPI GGATC 2 cut(s) 479, 492
BspQI GCTCTTC 1 cut(s) 255
BspTNI GGTCTC 2 cut(s) 109, 577
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 484
BssT1I CCWWGG 1 cut(s) 137
Bst4CI ACNGT 5 cut(s) 298, 409, 430, 494, 604
Bst6I CTCTTC 2 cut(s) 150, 255
BstC8I GCNNGC 2 cut(s) 371, 375
BstDEI CTNAG 5 cut(s) 88, 285, 333, 448, 507
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 4 cut(s) 109, 500, 577, 713
BstMBI GATC 1 cut(s) 484
BstMWI GCNNNNNNNGC 6 cut(s) 109, 383, 644, 682, 744, 753
BstNSI RCATGY 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 340, 406
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuI GTATCC 3 cut(s) 58, 521, 785
BsuRI GGCC 3 cut(s) 142, 638, 738
BtsIMutI CAGTG 2 cut(s) 356, 609
Cac8I GCNNGC 2 cut(s) 371, 375
CciI TCATGA 1 cut(s) 760
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 736
Csp6I GTAC 1 cut(s) 611
CspAI ACCGGT 1 cut(s) 208
CviAII CATG 5 cut(s) 370, 476, 554, 761, 783
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 5 cut(s) 88, 285, 333, 448, 507
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
Eam1104I CTCTTC 2 cut(s) 150, 255
EarI CTCTTC 2 cut(s) 150, 255
Eco130I CCWWGG 1 cut(s) 137
Eco147I AGGCCT 1 cut(s) 142
Eco31I GGTCTC 2 cut(s) 109, 577
Eco57I CTGAAG 2 cut(s) 279, 399
EcoT14I CCWWGG 1 cut(s) 137
EcoT22I ATGCAT 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 137
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 5 cut(s) 373, 479, 557, 764, 786
FaiI YATR 7 cut(s) 371, 433, 471, 477, 555, 762, 784
FatI CATG 5 cut(s) 369, 475, 553, 760, 782
FauI CCCGC 1 cut(s) 678
Fnu4HI GCNGC 3 cut(s) 354, 420, 739
Fsp4HI GCNGC 3 cut(s) 354, 420, 739
GluI GCNGC 3 cut(s) 354, 420, 739
HaeIII GGCC 3 cut(s) 142, 638, 738
HapII CCGG 1 cut(s) 209
Hin1II CATG 5 cut(s) 373, 479, 557, 764, 786
HinfI GANTC 3 cut(s) 226, 328, 573
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 670
Hpy188III TCNNGA 2 cut(s) 488, 761
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 3 cut(s) 300, 331, 687
HpyCH4III ACNGT 5 cut(s) 298, 409, 430, 494, 604
HpyF10VI GCNNNNNNNGC 6 cut(s) 109, 383, 644, 682, 744, 753
HpyF3I CTNAG 5 cut(s) 88, 285, 333, 448, 507
Hsp92II CATG 5 cut(s) 373, 479, 557, 764, 786
Kzo9I GATC 1 cut(s) 484
LguI GCTCTTC 1 cut(s) 255
Lsp1109I GCAGC 2 cut(s) 340, 406
LweI GCATC 3 cut(s) 31, 327, 373
MaeIII GTNAC 1 cut(s) 403
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 6 cut(s) 69, 72, 114, 137, 272, 392
MfeI CAATTG 1 cut(s) 164
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 7 cut(s) 52, 164, 171, 343, 543, 664, 729
MlyI GAGTC 3 cut(s) 220, 337, 582
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 9 cut(s) 12, 79, 153, 177, 196, 502, 625, 628, 714
Mph1103I ATGCAT 1 cut(s) 388
MseI TTAA 3 cut(s) 35, 660, 672
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 712
MspI CCGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 596
MwoI GCNNNNNNNGC 6 cut(s) 109, 383, 644, 682, 744, 753
NdeII GATC 1 cut(s) 484
NlaIII CATG 5 cut(s) 373, 479, 557, 764, 786
NlaIV GGNNCC 3 cut(s) 207, 486, 737
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 1 cut(s) 373
PaeI GCATGC 1 cut(s) 373
PagI TCATGA 1 cut(s) 760
PceI AGGCCT 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 2 cut(s) 370, 636
PctI GAATGC 1 cut(s) 596
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 3 cut(s) 355, 421, 740
PleI GAGTC 3 cut(s) 220, 336, 581
PpsI GAGTC 3 cut(s) 220, 336, 581
PspN4I GGNNCC 3 cut(s) 207, 486, 737
PspPI GGNCC 1 cut(s) 736
PstI CTGCAG 1 cut(s) 114
PsuI RGATCY 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 712
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
RseI CAYNNNNRTG 1 cut(s) 474
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 35, 660, 672
SatI GCNGC 3 cut(s) 354, 420, 739
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 1 cut(s) 736
SchI GAGTC 3 cut(s) 220, 337, 582
SduI GDGCHC 1 cut(s) 267
SetI ASST 7 cut(s) 259, 307, 342, 421, 441, 678, 714
SfaNI GCATC 3 cut(s) 31, 327, 373
SfcI CTRYAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 474
SphI GCATGC 1 cut(s) 373
Sse9I AATT 7 cut(s) 52, 164, 171, 343, 543, 664, 729
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 4 cut(s) 5, 230, 685, 739
StuI AGGCCT 1 cut(s) 142
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 5 cut(s) 298, 409, 430, 494, 604
TaqI TCGA 3 cut(s) 43, 176, 182
TasI AATT 7 cut(s) 52, 164, 171, 343, 543, 664, 729
TauI GCSGC 1 cut(s) 741
Tru1I TTAA 3 cut(s) 35, 660, 672
Tru9I TTAA 3 cut(s) 35, 660, 672
TscAI CASTG 2 cut(s) 363, 609
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 2 cut(s) 353, 419
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 3 cut(s) 137, 204, 777
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 363, 609
XapI RAATTY 3 cut(s) 171, 543, 664
XceI RCATGY 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.