Rw3G018800

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002533
Physical Location & Seq
Reverse (-)
21079236 .. 21081254
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018800.1

Sequence Viewer

Length: 813 bp
ATGGCGGGTTGGCAGAGGCATCTCCACTCCTTAATCCGTCAAGTTGGGAGAACCCTCGAATCCAATTACACCCAATCTGCCTCCTTTTCTTCTTCTTCTTCTCGCTTAGAGGCTGGTTTGCCTTATTTGCAGAGACTCTGCAGCAGGCCGTCTTCTCCTACCATTCCAAGGCCTCTTCATCGCTACTTTCAACAATTGGGGATTTCGAGTTCGAGGAACTTACTTGCAGAAGAACCGGTTTCATCTCCGTTGACTCCTCTTTTGACATCAACTTCTGCAAAAGCTGAAGAGCACAACCAGAAATCGCTTACTAAGCCTTCTACAGTTGAAGCTATCCTAAAGGGCATCAAACAGAGTCCTAAGAAGGTCAATTTAGTTGCTGCACTGGTTCGTGGCATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACGGTAAAGAGAGCCGCAAAAACTGTATATCAGGTTATTCACTCAGCCAGAGCAAACGCAACTCATAATCATGGGCTGGATCCAGACCGTCTCCTTGTTGCTGAGGCATTTGTTGGAAAGGGATACTACAAGAAAAGAATTTCCTACCATGCTAAAGGAAAATGTGGAGTCAAAATGAGACCAGAATGCCGACTGACAGTGGTAGTACGGGAGATTACCCCTGACGAGGAGGCCGAGATAGCCAAACTGAAAGTTAAGAATTTTGTTAAGCTCACCAAGCGGGAAAGAAGGCTTGTTCCTCATCAGCTGATTGAGACAACTTCAATTTGGGGCCGCAAAGGCAAGGGTTGCAATCATGAACCAAATGGTATCCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

270

Amino Acids

30.09

Weight (kDa)

10.21

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 111 - 214 1.5e-30 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 447, 712, 766
AclWI GGATC 2 cut(s) 506, 519
AcsI RAATTY 2 cut(s) 570, 691
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 639
AfiI CCNNNNNNNGG 2 cut(s) 168, 658
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 4 cut(s) 191, 329, 407, 756
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 4 cut(s) 284, 332, 703, 739
AluI AGCT 4 cut(s) 284, 332, 703, 739
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 4 cut(s) 127, 527, 604, 740
AlwI GGATC 2 cut(s) 506, 519
AoxI GGCC 4 cut(s) 146, 170, 663, 763
ApeKI GCWGC 2 cut(s) 141, 380
ApoI RAATTY 2 cut(s) 570, 691
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
AsiGI ACCGGT 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 763
AsuHPI GGTGA 1 cut(s) 697
BamHI GGATCC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 294
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 153, 367
BceAI ACGGC 1 cut(s) 133
BciVI GTATCC 2 cut(s) 548, 812
BcoDI GTCTC 4 cut(s) 127, 527, 604, 740
BfmI CTRYAG 2 cut(s) 139, 321
BfuI GTATCC 2 cut(s) 548, 812
BglI GCCNNNNNGGC 1 cut(s) 771
BisI GCNGC 4 cut(s) 142, 381, 447, 766
BlsI GCNGC 4 cut(s) 143, 382, 448, 767
BmgT120I GGNCC 1 cut(s) 763
BmiI GGNNCC 2 cut(s) 513, 764
BmsI GCATC 3 cut(s) 28, 354, 400
BpiI GAAGAC 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 534
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 658
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 168, 658
BseMII CTCAG 2 cut(s) 489, 525
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 246, 674
BseXI GCAGC 2 cut(s) 153, 367
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 4 cut(s) 148, 172, 665, 765
BshTI ACCGGT 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 168, 658
BsmAI GTCTC 4 cut(s) 127, 527, 604, 740
BsmBI CGTCTC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 623
BsnI GGCC 4 cut(s) 148, 172, 665, 765
Bso31I GGTCTC 1 cut(s) 604
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 511
BspACI CCGC 4 cut(s) 5, 447, 712, 766
BspANI GGCC 4 cut(s) 148, 172, 665, 765
BspCNI CTCAG 2 cut(s) 488, 526
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 2 cut(s) 513, 764
BspMAI CTGCAG 1 cut(s) 143
BspPI GGATC 2 cut(s) 506, 519
BspQI GCTCTTC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 604
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 1 cut(s) 511
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 5 cut(s) 325, 436, 457, 521, 631
Bst6I CTCTTC 2 cut(s) 180, 282
BstAPI GCANNNNNTGC 1 cut(s) 780
BstC8I GCNNGC 2 cut(s) 146, 398
BstDEI CTNAG 5 cut(s) 106, 312, 360, 475, 534
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 4 cut(s) 127, 527, 604, 740
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 6 cut(s) 127, 313, 671, 709, 771, 780
BstNSI RCATGY 1 cut(s) 400
BstSFI CTRYAG 2 cut(s) 139, 321
BstV1I GCAGC 2 cut(s) 153, 367
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuI GTATCC 2 cut(s) 548, 812
BsuRI GGCC 4 cut(s) 148, 172, 665, 765
BtgZI GCGATG 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 383, 636
Cac8I GCNNGC 2 cut(s) 146, 398
CciI TCATGA 1 cut(s) 787
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 763
Csp6I GTAC 1 cut(s) 638
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 5 cut(s) 397, 503, 581, 788, 810
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 5 cut(s) 106, 312, 360, 475, 534
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
Eam1104I CTCTTC 2 cut(s) 180, 282
EarI CTCTTC 2 cut(s) 180, 282
Eco130I CCWWGG 1 cut(s) 167
Eco147I AGGCCT 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 5 cut(s) 400, 506, 584, 791, 813
FaiI YATR 7 cut(s) 398, 460, 498, 504, 582, 789, 811
FatI CATG 5 cut(s) 396, 502, 580, 787, 809
FauI CCCGC 1 cut(s) 705
Fnu4HI GCNGC 4 cut(s) 142, 381, 447, 766
Fsp4HI GCNGC 4 cut(s) 142, 381, 447, 766
GluI GCNGC 4 cut(s) 142, 381, 447, 766
HaeIII GGCC 4 cut(s) 148, 172, 665, 765
HapII CCGG 1 cut(s) 236
Hin1II CATG 5 cut(s) 400, 506, 584, 791, 813
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 5 cut(s) 59, 135, 253, 355, 600
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 697
Hpy166II GTNNAC 1 cut(s) 252
Hpy188III TCNNGA 2 cut(s) 515, 788
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 3 cut(s) 327, 358, 714
HpyCH4III ACNGT 5 cut(s) 325, 436, 457, 521, 631
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 313, 671, 709, 771, 780
HpyF3I CTNAG 5 cut(s) 106, 312, 360, 475, 534
Hsp92II CATG 5 cut(s) 400, 506, 584, 791, 813
Kzo9I GATC 1 cut(s) 511
LguI GCTCTTC 1 cut(s) 282
Lsp1109I GCAGC 2 cut(s) 153, 367
LweI GCATC 3 cut(s) 28, 354, 400
MaeIII GTNAC 1 cut(s) 430
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 9 cut(s) 81, 84, 87, 90, 144, 167, 242, 299, 419
MfeI CAATTG 1 cut(s) 194
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 6 cut(s) 64, 194, 370, 570, 691, 756
MlyI GAGTC 4 cut(s) 129, 247, 364, 609
MmeI TCCRAC 1 cut(s) 526
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 3 cut(s) 32, 687, 699
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 739
MspI CCGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 623
MwoI GCNNNNNNNGC 6 cut(s) 127, 313, 671, 709, 771, 780
NdeII GATC 1 cut(s) 511
NlaIII CATG 5 cut(s) 400, 506, 584, 791, 813
NlaIV GGNNCC 2 cut(s) 513, 764
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 1 cut(s) 400
PaeI GCATGC 1 cut(s) 400
PagI TCATGA 1 cut(s) 787
PceI AGGCCT 1 cut(s) 172
PciSI GCTCTTC 1 cut(s) 282
PcsI WCGNNNNNNNCGW 2 cut(s) 397, 663
PctI GAATGC 1 cut(s) 623
PfeI GAWTC 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 235
PkrI GCNGC 4 cut(s) 143, 382, 448, 767
PleI GAGTC 4 cut(s) 129, 247, 363, 608
PpsI GAGTC 4 cut(s) 129, 247, 363, 608
PspN4I GGNNCC 2 cut(s) 513, 764
PspPI GGNCC 1 cut(s) 763
PstI CTGCAG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 739
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
RseI CAYNNNNRTG 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 3 cut(s) 32, 687, 699
SatI GCNGC 4 cut(s) 142, 381, 447, 766
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 1 cut(s) 763
SchI GAGTC 4 cut(s) 129, 247, 364, 609
SduI GDGCHC 1 cut(s) 294
SetI ASST 6 cut(s) 286, 334, 369, 468, 705, 741
SfaNI GCATC 3 cut(s) 28, 354, 400
SfcI CTRYAG 2 cut(s) 139, 321
SmiMI CAYNNNNRTG 1 cut(s) 501
SphI GCATGC 1 cut(s) 400
Sse9I AATT 6 cut(s) 64, 194, 370, 570, 691, 756
SseBI AGGCCT 1 cut(s) 172
SsiI CCGC 4 cut(s) 5, 447, 712, 766
StuI AGGCCT 1 cut(s) 172
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 5 cut(s) 325, 436, 457, 521, 631
TaqI TCGA 3 cut(s) 57, 206, 212
TasI AATT 6 cut(s) 64, 194, 370, 570, 691, 756
TauI GCSGC 2 cut(s) 449, 768
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 3 cut(s) 32, 687, 699
Tru9I TTAA 3 cut(s) 32, 687, 699
TscAI CASTG 2 cut(s) 390, 636
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 2 cut(s) 141, 380
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 3 cut(s) 167, 231, 804
TspGWI ACGGA 2 cut(s) 26, 237
TspRI CASTG 2 cut(s) 390, 636
XapI RAATTY 2 cut(s) 570, 691
XceI RCATGY 1 cut(s) 400
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.