Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009107.1

Orthogroup ID

OG0002533

Physical Location & Seq

Genomic Coordinates Reverse (-)

30618 .. 32990

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009107.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggaggaccagtctgcactgctaaagcgtaagcctctgttcatagtttgtggccgttgcgaaaactcggcaggtgaagaagccatggcggggggttggcagaggcatctccactccttaatccgtcgagtatccaattacacccaatctgcctccttttcttcttcttcttcttcttcttcttctcgcttaggggctggtttgccttatctgcagagaccatcttctcctacctctccaaggcctcttcatcactactttcaacaattgggaatttcgagttcgaggaacttacttgcagaggaaccggtttcatctcctttgactccgcttttgacatcaacttctgcaaaacctgaagagcacaaccagaaatcacttactaagccttctacggttcaagctattctaaagggcatcaaacagagtcctaagaaggtcaatttggttgctgcactggttcgtggcatgcttgttgaagatgcattgttgcagttgcaagtgacagtaaagagagctgcaaaaactgtatatcaggttattcactcagccagagcaaatgcaactcataatcatgggctggatccagaccgtcttcttgttgctgaggcatttgttggaaagggatactacaagaaaagaatttcctaccatgctaaaggaaaatgtggagtcaaaatgagaccagaatgccgactgacagtggtagtacgggagattacccctgacgaggaggccgagatagccaaactgaaagttaagaattttgttaagctcaccaagcgggaaagaaggcttgttcctcatcagctgattgagacaacttcaatttggggccgcaaaggcaagggtcgcaatcatgaaccaaatggtatccctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

294

Amino Acids

32.51

Weight (kDa)

10.14

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52370 AT1G52370 AT1G52370 AT1G52370 AT4G28360
fragaria_vesca	FvH4_6g20730 FvH4_6g20730
malus_domestica	MD12G1043300.v1.1 MD12G1043400.v1.1 MD14G1042400.v1.1
prunus_persica	Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1
pyrus_communis	pycom12g03740 pycom14g03610
rosa_chinensis	RchiOBHm_Chr3g0476631 RchiOBHm_Chr7g0223381
rosa_laevigata	RLG00000001980
rosa_multiflora	Rmu_sc0008241.1_g000012 Rmu_sc0009107.1_g000009 Rmu_sc0022781.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235860 Rroxscaffold_6G00405140
rosa_rugosa	Rorug03G0156000 Rorug03G0156000 Rorug03G0156000 Rorug03G0156100 Rorug03G0156200 Rorug07G0216400 Rorug07G0216400
rosa_samantha	Rh3AG206400 Rh3BG238800 Rh3CG232700 Rh3DG232700 Rh7AG360100 Rh7BG350100 Rh7CG378500 Rh7DG355300
rosa_wichuraiana	Rw3G018800 Rw7G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	62
AciI	CCGC	4 cut(s)	89, 329, 784, 838
AclWI	GGATC	2 cut(s)	578, 591
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	3 cut(s)	273, 642, 763
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	711
AfiI	CCNNNNNNNGG	3 cut(s)	90, 240, 730
AgeI	ACCGGT	1 cut(s)	307
AgsI	TTSAA	4 cut(s)	263, 401, 479, 828
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	404, 518, 775, 811
AluI	AGCT	4 cut(s)	404, 518, 775, 811
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	3 cut(s)	211, 676, 812
AlwI	GGATC	2 cut(s)	578, 591
AoxI	GGCC	4 cut(s)	52, 242, 735, 835
ApeKI	GCWGC	2 cut(s)	452, 518
ApoI	RAATTY	3 cut(s)	273, 642, 763
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
AsiGI	ACCGGT	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	7, 835
AsuHPI	GGTGA	2 cut(s)	86, 769
AvaII	GGWCC	1 cut(s)	7
BamHI	GGATCC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	439, 505
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	39
BciVI	GTATCC	3 cut(s)	142, 620, 884
BcoDI	GTCTC	3 cut(s)	211, 676, 812
BfmI	CTRYAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	62
BfuI	GTATCC	3 cut(s)	142, 620, 884
BglI	GCCNNNNNGGC	1 cut(s)	843
BisI	GCNGC	3 cut(s)	453, 519, 838
BlsI	GCNGC	3 cut(s)	454, 520, 839
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	7, 835
BmiI	GGNNCC	3 cut(s)	306, 585, 836
BmsI	GCATC	3 cut(s)	115, 426, 472
BpiI	GAAGAC	1 cut(s)	587
Bpu10I	CCTNAGC	2 cut(s)	190, 606
BsaI	GGTCTC	2 cut(s)	211, 676
BsaJI	CCNNGG	2 cut(s)	84, 239
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 240, 730
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	10, 462
BseDI	CCNNGG	2 cut(s)	84, 239
BseLI	CCNNNNNNNGG	3 cut(s)	90, 240, 730
BseMII	CTCAG	2 cut(s)	561, 597
BseNI	ACTGG	2 cut(s)	10, 462
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	2 cut(s)	439, 505
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	4 cut(s)	54, 244, 737, 837
BshTI	ACCGGT	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	3 cut(s)	90, 240, 730
BsmAI	GTCTC	3 cut(s)	211, 676, 812
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	4 cut(s)	54, 244, 737, 837
Bso31I	GGTCTC	2 cut(s)	211, 676
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	583
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	4 cut(s)	89, 329, 784, 838
BspANI	GGCC	4 cut(s)	54, 244, 737, 837
BspCNI	CTCAG	2 cut(s)	560, 598
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	3 cut(s)	306, 585, 836
BspMAI	CTGCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	578, 591
BspQI	GCTCTTC	1 cut(s)	354
BspTNI	GGTCTC	2 cut(s)	211, 676
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	10, 462
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	84, 239
BssMI	GATC	1 cut(s)	583
BssT1I	CCWWGG	2 cut(s)	84, 239
Bst4CI	ACNGT	5 cut(s)	397, 508, 529, 593, 703
Bst6I	CTCTTC	2 cut(s)	252, 354
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	5 cut(s)	190, 384, 432, 547, 606
BstDSI	CCRYGG	1 cut(s)	84
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	586
BstMAI	GTCTC	3 cut(s)	211, 676, 812
BstMBI	GATC	1 cut(s)	583
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 743, 781, 843, 852
BstNSI	RCATGY	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	439, 505
BstV2I	GAAGAC	1 cut(s)	587
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuI	GTATCC	3 cut(s)	142, 620, 884
BsuRI	GGCC	4 cut(s)	54, 244, 737, 837
BtgI	CCRYGG	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	3 cut(s)	17, 455, 708
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	470
CciI	TCATGA	1 cut(s)	859
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	7, 835
Csp6I	GTAC	1 cut(s)	710
CspAI	ACCGGT	1 cut(s)	307
CviAII	CATG	6 cut(s)	85, 469, 575, 653, 860, 882
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	5 cut(s)	190, 384, 432, 547, 606
DpnI	GATC	1 cut(s)	585
DpnII	GATC	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	252, 354
EarI	CTCTTC	2 cut(s)	252, 354
Eco130I	CCWWGG	2 cut(s)	84, 239
Eco147I	AGGCCT	1 cut(s)	244
Eco31I	GGTCTC	2 cut(s)	211, 676
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	84, 239
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	84, 239
FaeI	CATG	6 cut(s)	88, 472, 578, 656, 863, 885
FaiI	YATR	9 cut(s)	44, 86, 470, 532, 570, 576, 654, 861, 883
FatI	CATG	6 cut(s)	84, 468, 574, 652, 859, 881
FauI	CCCGC	2 cut(s)	82, 777
Fnu4HI	GCNGC	3 cut(s)	453, 519, 838
Fsp4HI	GCNGC	3 cut(s)	453, 519, 838
GluI	GCNGC	3 cut(s)	453, 519, 838
HaeIII	GGCC	4 cut(s)	54, 244, 737, 837
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	6 cut(s)	88, 472, 578, 656, 863, 885
HinfI	GANTC	3 cut(s)	325, 427, 672
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	2 cut(s)	86, 769
Hpy188III	TCNNGA	2 cut(s)	587, 860
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	3 cut(s)	399, 430, 786
HpyCH4III	ACNGT	5 cut(s)	397, 508, 529, 593, 703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 743, 781, 843, 852
HpyF3I	CTNAG	5 cut(s)	190, 384, 432, 547, 606
Hsp92II	CATG	6 cut(s)	88, 472, 578, 656, 863, 885
Kzo9I	GATC	1 cut(s)	583
LguI	GCTCTTC	1 cut(s)	354
Lsp1109I	GCAGC	2 cut(s)	439, 505
LweI	GCATC	3 cut(s)	115, 426, 472
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	1 cut(s)	585
MboI	GATC	1 cut(s)	583
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	7 cut(s)	136, 266, 273, 442, 642, 763, 828
MlyI	GAGTC	3 cut(s)	319, 436, 681
MmeI	TCCRAC	1 cut(s)	598
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	3 cut(s)	119, 759, 771
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	811
MspI	CCGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	695
MwoI	GCNNNNNNNGC	5 cut(s)	211, 743, 781, 843, 852
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	583
NlaIII	CATG	6 cut(s)	88, 472, 578, 656, 863, 885
NlaIV	GGNNCC	3 cut(s)	306, 585, 836
NmeAIII	GCCGAG	2 cut(s)	47, 763
NmuCI	GTSAC	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	472
PaeI	GCATGC	1 cut(s)	472
PagI	TCATGA	1 cut(s)	859
PaqCI	CACCTGC	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PctI	GAATGC	1 cut(s)	695
PinAI	ACCGGT	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	454, 520, 839
PleI	GAGTC	3 cut(s)	319, 435, 680
PpsI	GAGTC	3 cut(s)	319, 435, 680
PspN4I	GGNNCC	3 cut(s)	306, 585, 836
PspPI	GGNCC	2 cut(s)	7, 835
PstI	CTGCAG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	811
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
RseI	CAYNNNNRTG	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	119, 759, 771
SatI	GCNGC	3 cut(s)	453, 519, 838
Sau3AI	GATC	1 cut(s)	583
Sau96I	GGNCC	2 cut(s)	7, 835
SchI	GAGTC	3 cut(s)	319, 436, 681
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	9 cut(s)	76, 236, 358, 406, 441, 520, 540, 777, 813
SfaNI	GCATC	3 cut(s)	115, 426, 472
SfcI	CTRYAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	573
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	7 cut(s)	136, 266, 273, 442, 642, 763, 828
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	4 cut(s)	89, 329, 784, 838
StuI	AGGCCT	1 cut(s)	244
StyI	CCWWGG	2 cut(s)	84, 239
TaaI	ACNGT	5 cut(s)	397, 508, 529, 593, 703
TaqI	TCGA	3 cut(s)	127, 278, 284
TasI	AATT	7 cut(s)	136, 266, 273, 442, 642, 763, 828
TauI	GCSGC	1 cut(s)	840
Tru1I	TTAA	3 cut(s)	119, 759, 771
Tru9I	TTAA	3 cut(s)	119, 759, 771
TscAI	CASTG	3 cut(s)	24, 462, 708
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	2 cut(s)	452, 518
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	4 cut(s)	31, 239, 303, 876
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	3 cut(s)	24, 462, 708
VpaK11BI	GGWCC	1 cut(s)	7
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	3 cut(s)	273, 642, 763
XceI	RCATGY	1 cut(s)	472
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.