Prupe.7G091500_v2.0.a1

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0002533
Physical Location & Seq
Forward (+)
12451225 .. 12453928
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G091500.1

Sequence Viewer

Length: 828 bp
ATGGTGGGTTGGCAGAGGCATCTTCAGTCAGCAATCCGTCAAATTGGGAAAAGGGTGGAATGTAGTTACAACCCTTCTGCTAACTTTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTCGGTTAGAGGGTGTCTTGCCTTATTTTCAAACACTTTGCAAACCATCTTCTCCAACCATTTCAAGGCCCTTTCATCAATATTTTCAGCACTTGGGAATTTCGAGTTCAAGGACTTTACTAGCTGAGGAAACACCTTCTCCATCTCCATTGACTCCTCTTCTGACATCGAACACTGGAAAAGATGAAGAGCACAAGCAAAAATCACTGACTAAACCTGATAAAGTTCAAGCAATCTTAAAGGGCATCAAACAGAGTCCTAAGAAGGTTAACTTGGTTGCTGCACTGGTACGTGGTATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACAGTAAAGCGAGCTTCCAAAACTGTGTACCAGGTCATTCACTCAGCCCGAGCAAATGCTACTCATAATCACGGGTTGGATCCAGACCGTCTCCTTGTTGCTGAGGCATTTGTTGGAAAGGGATACTTCAAAAAGAGACTGTCCTACCATGCTAAAGGCAAATGTGGAGTTAAAGTGAGACCAGAATGCCGACTGACAGTGGTCGTAAGGGAGATCACCCCTGACGAGGAGGCAGAGATAGCCAAACTGAAAGTTAAGAATTTCGTGAAGCTCACAAAGCGCGAAAGAAGGCTTGTTCCTCACAAGCTTATTGAGACAACTCCTATTTGGAACCGCAAAGGCAAAGCGCGTGAGCGTGAACGAAATGGTGCCGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

276

Amino Acids

30.77

Weight (kDa)

10.23

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 815
AccII CGCG 2 cut(s) 729, 796
AciI CCGC 2 cut(s) 781, 819
AclWI GGATC 2 cut(s) 521, 534
AcsI RAATTY 2 cut(s) 213, 706
AcuI CTGAAG 1 cut(s) 8
AfaI GTAC 2 cut(s) 405, 476
AfiI CCNNNNNNNGG 2 cut(s) 180, 673
AgsI TTSAA 6 cut(s) 146, 180, 225, 344, 422, 577
AjnI CCWGG 1 cut(s) 477
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 4 cut(s) 239, 461, 718, 754
AluI AGCT 4 cut(s) 239, 461, 718, 754
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 4 cut(s) 542, 577, 619, 755
AlwI GGATC 2 cut(s) 521, 534
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 395, 821
ApoI RAATTY 2 cut(s) 213, 706
AspLEI GCGC 2 cut(s) 729, 796
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 655
AvaI CYCGRG 1 cut(s) 495
BamHI GGATCC 1 cut(s) 526
BanI GGYRCC 1 cut(s) 815
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 309
BbvCI CCTCAGC 2 cut(s) 240, 549
BbvI GCAGC 2 cut(s) 382, 808
BccI CCATC 2 cut(s) 169, 265
BciT130I CCWGG 1 cut(s) 479
BciVI GTATCC 1 cut(s) 563
BcoDI GTCTC 4 cut(s) 542, 577, 619, 755
BfaI CTAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 563
BisI GCNGC 3 cut(s) 396, 819, 822
BlsI GCNGC 3 cut(s) 397, 820, 823
Bme1390I CCNGG 1 cut(s) 479
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 3 cut(s) 528, 779, 817
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 3 cut(s) 28, 369, 415
BoxI GACNNNNGTC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 99
Bpu10I CCTNAGC 2 cut(s) 240, 549
BsaAI YACGTR 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 619
BsaXI ACNNNNNCTCC 4 cut(s) 238, 268, 606, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 673
Bse1I ACTGG 2 cut(s) 295, 405
BseBI CCWGG 1 cut(s) 479
BseLI CCNNNNNNNGG 2 cut(s) 180, 673
BseMII CTCAG 3 cut(s) 231, 504, 540
BseNI ACTGG 2 cut(s) 295, 405
BseRI GAGGAG 2 cut(s) 261, 689
BseXI GCAGC 2 cut(s) 382, 808
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 2 cut(s) 729, 796
BshFI GGCC 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 815
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 180, 673
BsmAI GTCTC 4 cut(s) 542, 577, 619, 755
BsmBI CGTCTC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 1 cut(s) 184
Bso31I GGTCTC 1 cut(s) 619
BsoBI CYCGRG 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 2 cut(s) 526, 660
BspACI CCGC 2 cut(s) 781, 819
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 3 cut(s) 232, 503, 541
BspFNI CGCG 2 cut(s) 729, 796
BspLI GGNNCC 3 cut(s) 528, 779, 817
BspPI GGATC 2 cut(s) 521, 534
BspQI GCTCTTC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 815
BspTNI GGTCTC 1 cut(s) 619
BsrI ACTGG 2 cut(s) 295, 405
BssMI GATC 2 cut(s) 526, 660
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 5 cut(s) 451, 472, 536, 588, 646
Bst6I CTCTTC 2 cut(s) 279, 297
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 4 cut(s) 240, 375, 490, 549
BstFNI CGCG 2 cut(s) 729, 796
BstHHI GCGC 2 cut(s) 729, 796
BstKTI GATC 2 cut(s) 529, 663
BstMAI GTCTC 4 cut(s) 542, 577, 619, 755
BstMBI GATC 2 cut(s) 526, 660
BstMWI GCNNNNNNNGC 2 cut(s) 686, 724
BstNI CCWGG 1 cut(s) 479
BstPAI GACNNNNGTC 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 477
BstUI CGCG 2 cut(s) 729, 796
BstV1I GCAGC 2 cut(s) 382, 808
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 1 cut(s) 184
BtsIMutI CAGTG 4 cut(s) 288, 320, 398, 651
Cac8I GCNNGC 1 cut(s) 459
CfoI GCGC 2 cut(s) 729, 796
Cfr13I GGNCC 1 cut(s) 183
CsiI ACCWGGT 1 cut(s) 477
Csp6I GTAC 2 cut(s) 404, 475
CviAII CATG 2 cut(s) 596, 825
CviJI RGCY 8 cut(s) 184, 239, 461, 494, 689, 718, 739, 754
CviKI_1 RGCY 8 cut(s) 184, 239, 461, 494, 689, 718, 739, 754
CviQI GTAC 2 cut(s) 404, 475
DdeI CTNAG 4 cut(s) 240, 375, 490, 549
DpnI GATC 2 cut(s) 528, 662
DpnII GATC 2 cut(s) 526, 660
Eam1104I CTCTTC 2 cut(s) 279, 297
EarI CTCTTC 2 cut(s) 279, 297
Eco31I GGTCTC 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 2 cut(s) 599, 828
FaiI YATR 4 cut(s) 413, 513, 597, 826
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 557, 589
FatI CATG 2 cut(s) 595, 824
Fnu4HI GCNGC 3 cut(s) 396, 819, 822
Fsp4HI GCNGC 3 cut(s) 396, 819, 822
FspBI CTAG 1 cut(s) 236
GlaI GCGC 2 cut(s) 728, 795
GluI GCNGC 3 cut(s) 396, 819, 822
HaeIII GGCC 1 cut(s) 184
HhaI GCGC 2 cut(s) 729, 796
Hin1II CATG 2 cut(s) 599, 828
Hin6I GCGC 2 cut(s) 727, 794
HinP1I GCGC 2 cut(s) 727, 794
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 2 cut(s) 268, 370
HpaI GTTAAC 1 cut(s) 385
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 3 cut(s) 385, 475, 806
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 2 cut(s) 530, 712
Hpy8I GTNNAC 3 cut(s) 385, 475, 806
HpyAV CCTTC 4 cut(s) 84, 261, 373, 729
HpyCH4III ACNGT 5 cut(s) 451, 472, 536, 588, 646
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 6 cut(s) 156, 398, 428, 436, 442, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 724
HpyF3I CTNAG 4 cut(s) 240, 375, 490, 549
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 2 cut(s) 599, 828
HspAI GCGC 2 cut(s) 727, 794
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 526, 660
LguI GCTCTTC 1 cut(s) 297
LpnPI CCDG 8 cut(s) 276, 345, 386, 464, 491, 543, 642, 681
Lsp1109I GCAGC 2 cut(s) 382, 808
LweI GCATC 3 cut(s) 28, 369, 415
MabI ACCWGGT 1 cut(s) 477
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 65, 445
MalI GATC 2 cut(s) 528, 662
MboI GATC 2 cut(s) 526, 660
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 3 cut(s) 42, 213, 706
MlyI GAGTC 2 cut(s) 262, 379
MmeI TCCRAC 3 cut(s) 194, 504, 541
MnlI CCTC 8 cut(s) 9, 118, 235, 282, 544, 667, 670, 756
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 4 cut(s) 353, 384, 618, 702
MspA1I CMGCKG 1 cut(s) 821
MspR9I CCNGG 1 cut(s) 479
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 2 cut(s) 729, 796
MwoI GCNNNNNNNGC 2 cut(s) 686, 724
NdeII GATC 2 cut(s) 526, 660
NlaIII CATG 2 cut(s) 599, 828
NlaIV GGNNCC 3 cut(s) 528, 779, 817
NmuCI GTSAC 1 cut(s) 445
NsiI ATGCAT 1 cut(s) 430
PciSI GCTCTTC 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PctI GAATGC 1 cut(s) 638
PkrI GCNGC 3 cut(s) 397, 820, 823
PleI GAGTC 2 cut(s) 262, 378
PpsI GAGTC 2 cut(s) 262, 378
Ppu21I YACGTR 1 cut(s) 407
PshAI GACNNNNGTC 1 cut(s) 647
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 3 cut(s) 528, 779, 817
PspPI GGNCC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 2 cut(s) 405, 476
RsaNI GTAC 2 cut(s) 404, 475
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 4 cut(s) 353, 384, 618, 702
SatI GCNGC 3 cut(s) 396, 819, 822
Sau3AI GATC 2 cut(s) 526, 660
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 2 cut(s) 262, 379
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 309
SetI ASST 9 cut(s) 241, 253, 334, 384, 409, 463, 483, 720, 756
SexAI ACCWGGT 1 cut(s) 477
SfaNI GCATC 3 cut(s) 28, 369, 415
Sse9I AATT 3 cut(s) 42, 213, 706
SsiI CCGC 2 cut(s) 781, 819
SspI AATATT 1 cut(s) 197
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 477
TaaI ACNGT 5 cut(s) 451, 472, 536, 588, 646
TaiI ACGT 1 cut(s) 409
TaqI TCGA 2 cut(s) 218, 284
TasI AATT 3 cut(s) 42, 213, 706
TauI GCSGC 1 cut(s) 821
Tru1I TTAA 4 cut(s) 353, 384, 618, 702
Tru9I TTAA 4 cut(s) 353, 384, 618, 702
TscAI CASTG 4 cut(s) 295, 327, 405, 651
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 2 cut(s) 395, 821
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 179, 315
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 4 cut(s) 295, 327, 405, 651
XapI RAATTY 2 cut(s) 213, 706
XspI CTAG 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.