Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008241.1

Orthogroup ID

OG0002533

Physical Location & Seq

Genomic Coordinates Reverse (-)

70984 .. 73186

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008241.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ctggtaaagcgtagagctctcccgactcggcaaacctgcaagagtgcaaggctagaaccagcaacccatctccggtgtccacctccgcctccaggcgaagaagccatggcgggttggcagaggcatctccactccttaatccgtcaagttgggagaaccctcgaatccaattacacccaatctgcctccttttcttcttcttctcgcttagaggctggtttgccttatttgcagagactctgcagcagaccgtcttctcctaccattccaaggcctcttcatcgctgctttcaacaattggggatttcgagttcgaggaacttacttgcagaagaaccggtttcatctccgttgactcctcttttgacatcaacttctgcaaaagctgaagagcacaaccagaaatcgcttactaagccttctacagctcaagctatactaaagggcatcaaacagagtcctaagaaggtcaatttagttgctgcactggttcgtggcatgcgtgttgaagatgcattgttgcagttgcaagtgacggtaaagagagccgcaaaaactgtatatcaggttattcactcagccagagcaaacgcaactcataatcatgggctggattcagaccgtctccttgttgctgaggcatttgttggaaagggatactacaagaaaagaatttcctaccatgctaaaggaaaatgtggagtcaaaatgagaccagaatgccgactgacagtggtagtacgggagattacccctgacgaggaggccgagatagccaaactgaaagttaagaattttgttaagctcaccaagcgggaaagaaggcttgttcctcatcagctgattgagacaacttcaatttggggccgcaaaggcaagggtcgcaatcatgaaccaaatggtatccctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

304

Amino Acids

33.82

Weight (kDa)

10.41

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52370 AT1G52370 AT1G52370 AT1G52370 AT4G28360
fragaria_vesca	FvH4_6g20730 FvH4_6g20730
malus_domestica	MD12G1043300.v1.1 MD12G1043400.v1.1 MD14G1042400.v1.1
prunus_persica	Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1
pyrus_communis	pycom12g03740 pycom14g03610
rosa_chinensis	RchiOBHm_Chr3g0476631 RchiOBHm_Chr7g0223381
rosa_laevigata	RLG00000001980
rosa_multiflora	Rmu_sc0008241.1_g000012 Rmu_sc0009107.1_g000009 Rmu_sc0022781.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235860 Rroxscaffold_6G00405140
rosa_rugosa	Rorug03G0156000 Rorug03G0156000 Rorug03G0156000 Rorug03G0156100 Rorug03G0156200 Rorug07G0216400 Rorug07G0216400
rosa_samantha	Rh3AG206400 Rh3BG238800 Rh3CG232700 Rh3DG232700 Rh7AG360100 Rh7BG350100 Rh7CG378500 Rh7DG355300
rosa_wichuraiana	Rw3G018800 Rw7G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AciI	CCGC	5 cut(s)	86, 110, 549, 814, 868
AcsI	RAATTY	2 cut(s)	672, 793
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	4 cut(s)	72, 92, 270, 760
AgeI	ACCGGT	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	293, 509, 858
AjnI	CCWGG	1 cut(s)	91
AloI	GAACNNNNNNTCC	2 cut(s)	295, 327
AluBI	AGCT	6 cut(s)	17, 386, 428, 434, 805, 841
AluI	AGCT	6 cut(s)	17, 386, 428, 434, 805, 841
Alw21I	GWGCWC	2 cut(s)	19, 396
Alw26I	GTCTC	4 cut(s)	229, 629, 706, 842
AoxI	GGCC	3 cut(s)	272, 765, 865
ApeKI	GCWGC	3 cut(s)	243, 285, 482
ApoI	RAATTY	2 cut(s)	672, 793
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AsiGI	ACCGGT	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	865
AsuHPI	GGTGA	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	19, 396
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	3 cut(s)	255, 272, 469
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	93
BciVI	GTATCC	2 cut(s)	650, 914
BcoDI	GTCTC	4 cut(s)	229, 629, 706, 842
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	2 cut(s)	241, 423
BfuAI	ACCTGC	1 cut(s)	44
BfuI	GTATCC	2 cut(s)	650, 914
BglI	GCCNNNNNGGC	1 cut(s)	873
BisI	GCNGC	5 cut(s)	244, 286, 483, 549, 868
BlsI	GCNGC	5 cut(s)	245, 287, 484, 550, 869
Bme1390I	CCNGG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	865
BmiI	GGNNCC	1 cut(s)	866
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	133, 456, 502
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	706
BsaJI	CCNNGG	2 cut(s)	105, 269
BsaWI	WCCGGW	2 cut(s)	72, 337
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 92, 270, 760
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	105, 269
BseLI	CCNNNNNNNGG	4 cut(s)	72, 92, 270, 760
BseMII	CTCAG	2 cut(s)	591, 627
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	2 cut(s)	348, 776
BseXI	GCAGC	3 cut(s)	255, 272, 469
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	274, 767, 867
BshTI	ACCGGT	1 cut(s)	337
BsiHKAI	GWGCWC	2 cut(s)	19, 396
BsiSI	CCGG	2 cut(s)	73, 338
BslI	CCNNNNNNNGG	4 cut(s)	72, 92, 270, 760
BsmAI	GTCTC	4 cut(s)	229, 629, 706, 842
BsmBI	CGTCTC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	3 cut(s)	274, 767, 867
Bso31I	GGTCTC	1 cut(s)	706
Bsp1286I	GDGCHC	2 cut(s)	19, 396
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	5 cut(s)	86, 110, 549, 814, 868
BspANI	GGCC	3 cut(s)	274, 767, 867
BspCNI	CTCAG	2 cut(s)	590, 628
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	1 cut(s)	866
BspMAI	CTGCAG	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	44
BspQI	GCTCTTC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	105, 269
BssT1I	CCWWGG	2 cut(s)	105, 269
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	5 cut(s)	252, 538, 559, 623, 733
Bst6I	CTCTTC	2 cut(s)	282, 384
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	5 cut(s)	208, 414, 462, 577, 636
BstDSI	CCRYGG	1 cut(s)	105
BstMAI	GTCTC	4 cut(s)	229, 629, 706, 842
BstMWI	GCNNNNNNNGC	6 cut(s)	229, 415, 773, 811, 873, 882
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	2 cut(s)	241, 423
BstV1I	GCAGC	3 cut(s)	255, 272, 469
BstV2I	GAAGAC	1 cut(s)	246
BsuI	GTATCC	2 cut(s)	650, 914
BsuRI	GGCC	3 cut(s)	274, 767, 867
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	485, 738
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	500
CciI	TCATGA	1 cut(s)	889
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	865
Csp6I	GTAC	1 cut(s)	740
CspAI	ACCGGT	1 cut(s)	337
CviAII	CATG	6 cut(s)	106, 499, 605, 683, 890, 912
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	5 cut(s)	208, 414, 462, 577, 636
Eam1104I	CTCTTC	2 cut(s)	282, 384
EarI	CTCTTC	2 cut(s)	282, 384
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	105, 269
Eco147I	AGGCCT	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	706
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	105, 269
EcoT22I	ATGCAT	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	2 cut(s)	105, 269
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	6 cut(s)	109, 502, 608, 686, 893, 915
FaiI	YATR	9 cut(s)	107, 437, 500, 562, 600, 606, 684, 891, 913
FatI	CATG	6 cut(s)	105, 498, 604, 682, 889, 911
FauI	CCCGC	2 cut(s)	103, 807
Fnu4HI	GCNGC	5 cut(s)	244, 286, 483, 549, 868
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	5 cut(s)	244, 286, 483, 549, 868
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	5 cut(s)	244, 286, 483, 549, 868
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	274, 767, 867
HapII	CCGG	2 cut(s)	73, 338
Hin1II	CATG	6 cut(s)	109, 502, 608, 686, 893, 915
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	7 cut(s)	25, 164, 237, 355, 457, 614, 702
HpaII	CCGG	2 cut(s)	73, 338
HphI	GGTGA	1 cut(s)	799
Hpy166II	GTNNAC	2 cut(s)	80, 354
Hpy188I	TCNGA	1 cut(s)	619
Hpy188III	TCNNGA	2 cut(s)	22, 890
Hpy8I	GTNNAC	2 cut(s)	80, 354
HpyAV	CCTTC	3 cut(s)	429, 460, 816
HpyCH4III	ACNGT	5 cut(s)	252, 538, 559, 623, 733
HpyF10VI	GCNNNNNNNGC	6 cut(s)	229, 415, 773, 811, 873, 882
HpyF3I	CTNAG	5 cut(s)	208, 414, 462, 577, 636
Hsp92II	CATG	6 cut(s)	109, 502, 608, 686, 893, 915
LguI	GCTCTTC	1 cut(s)	384
Lsp1109I	GCAGC	3 cut(s)	255, 272, 469
LweI	GCATC	3 cut(s)	133, 456, 502
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	532
MboII	GAAGA	9 cut(s)	110, 186, 189, 192, 246, 269, 344, 401, 521
MfeI	CAATTG	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	19, 396
MluCI	AATT	6 cut(s)	169, 296, 472, 672, 793, 858
MlyI	GAGTC	5 cut(s)	19, 231, 349, 466, 711
MmeI	TCCRAC	1 cut(s)	628
Mph1103I	ATGCAT	1 cut(s)	517
MseI	TTAA	3 cut(s)	137, 789, 801
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	841
MspI	CCGG	2 cut(s)	73, 338
MspR9I	CCNGG	1 cut(s)	93
MunI	CAATTG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	6 cut(s)	229, 415, 773, 811, 873, 882
NcoI	CCATGG	1 cut(s)	105
NlaIII	CATG	6 cut(s)	109, 502, 608, 686, 893, 915
NlaIV	GGNNCC	1 cut(s)	866
NmeAIII	GCCGAG	2 cut(s)	7, 793
NmuCI	GTSAC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	502
PaeI	GCATGC	1 cut(s)	502
PagI	TCATGA	1 cut(s)	889
PceI	AGGCCT	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	2 cut(s)	499, 765
PctI	GAATGC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	164, 614
PinAI	ACCGGT	1 cut(s)	337
PkrI	GCNGC	5 cut(s)	245, 287, 484, 550, 869
PleI	GAGTC	5 cut(s)	19, 231, 349, 465, 710
PpsI	GAGTC	5 cut(s)	19, 231, 349, 465, 710
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	866
PspPI	GGNCC	1 cut(s)	865
PstI	CTGCAG	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	841
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	137, 789, 801
SatI	GCNGC	5 cut(s)	244, 286, 483, 549, 868
Sau96I	GGNCC	1 cut(s)	865
SchI	GAGTC	5 cut(s)	19, 231, 349, 466, 711
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	2 cut(s)	19, 396
SfaNI	GCATC	3 cut(s)	133, 456, 502
SfcI	CTRYAG	2 cut(s)	241, 423
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	6 cut(s)	169, 296, 472, 672, 793, 858
SseBI	AGGCCT	1 cut(s)	274
SsiI	CCGC	5 cut(s)	86, 110, 549, 814, 868
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	2 cut(s)	105, 269
TaaI	ACNGT	5 cut(s)	252, 538, 559, 623, 733
TaqI	TCGA	3 cut(s)	162, 308, 314
TasI	AATT	6 cut(s)	169, 296, 472, 672, 793, 858
TauI	GCSGC	2 cut(s)	551, 870
TfiI	GAWTC	2 cut(s)	164, 614
Tru1I	TTAA	3 cut(s)	137, 789, 801
Tru9I	TTAA	3 cut(s)	137, 789, 801
TscAI	CASTG	2 cut(s)	492, 738
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	3 cut(s)	243, 285, 482
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	3 cut(s)	269, 333, 906
TspGWI	ACGGA	2 cut(s)	131, 339
TspRI	CASTG	2 cut(s)	492, 738
XapI	RAATTY	2 cut(s)	672, 793
XceI	RCATGY	1 cut(s)	502
XspI	CTAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.