Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002533

Physical Location & Seq

Genomic Coordinates Reverse (-)

3653111 .. 3655301

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCGGCTTGGCAGAGGCATCTGCAATCAGCTATCCGTCAAATTGGAAAAAGGGTTGAATTTAGTTACAACCCTCGAGCCAATTTCTGTTCTTCTTCCTCTTCTCGTTTAGAGGGTCTCTTGCCTTATTTCCAAACTCTTTGCAAACCATCTTCTCCAACCATTTCAAGGCCCCTTCATCAATATTTTCAGCACTTGGGAATTTCTAGTTCGAGAAACTTGAGAGCTGAGGAAACACCTCTTCCATCTCCATTGACTCCTGTTTTGGCATCAAATACTGCGATGAATGAGGAGCACAAGCAGAAATCGCTCACTAAACCTGCTAAAGTTCAAGCCATCTTAAAGGGAATAAAGCAGAGCCCTAAGAAGGTCAACTTGGTTGCTGCACTGGTACGTGGTATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACAGTAAAGCGAGCTTCAAAAACTGTGTACCAGGTCATTCATTCAGCCCGAGCAAATGCAACTCATAATCATGGGTTGGATCCAGACCGTCTCCTTGTTGCCGAGGCTTTTGTTGGAAAGGGATTCTTCAAAAAGAGGCTATCCTACCATGCTAAAGGCAAATGTGGAGTGAAAGTGAGACCAGAATGCCGCCTTACGGTTGTAGTGAGGGAGATTACCCCTGACGAGGAGGCAGAGATAGCCAAACTGAAGGTTAAGAATTTCATTAAGATGACTAAGCGCGAAAGAAAGCTTGTTCCTCACCAACTTATTGAGACAACTCCAATTTGGGGCCGCAAAGGCAGAAGTCGTGATCGTGAACGAAATGGTGAGGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

272

Amino Acids

30.56

Weight (kDa)

10.41

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52370 AT1G52370 AT1G52370 AT1G52370 AT4G28360
fragaria_vesca	FvH4_6g20730 FvH4_6g20730
malus_domestica	MD12G1043300.v1.1 MD12G1043400.v1.1 MD14G1042400.v1.1
prunus_persica	Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1
pyrus_communis	pycom12g03740 pycom14g03610
rosa_chinensis	RchiOBHm_Chr3g0476631 RchiOBHm_Chr7g0223381
rosa_laevigata	RLG00000001980
rosa_multiflora	Rmu_sc0008241.1_g000012 Rmu_sc0009107.1_g000009 Rmu_sc0022781.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235860 Rroxscaffold_6G00405140
rosa_rugosa	Rorug03G0156000 Rorug03G0156000 Rorug03G0156000 Rorug03G0156100 Rorug03G0156200 Rorug07G0216400 Rorug07G0216400
rosa_samantha	Rh3AG206400 Rh3BG238800 Rh3CG232700 Rh3DG232700 Rh7AG360100 Rh7BG350100 Rh7CG378500 Rh7DG355300
rosa_wichuraiana	Rw3G018800 Rw7G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AccII	CGCG	1 cut(s)	717
AciI	CCGC	3 cut(s)	5, 625, 769
AclWI	GGATC	2 cut(s)	509, 522
AcsI	RAATTY	3 cut(s)	59, 201, 694
AcuI	CTGAAG	1 cut(s)	704
AfaI	GTAC	2 cut(s)	393, 464
AfiI	CCNNNNNNNGG	5 cut(s)	168, 367, 631, 661, 764
AgsI	TTSAA	6 cut(s)	59, 168, 332, 410, 453, 565
AjnI	CCWGG	1 cut(s)	465
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	4 cut(s)	32, 227, 449, 727
AluI	AGCT	4 cut(s)	32, 227, 449, 727
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	4 cut(s)	122, 530, 607, 743
AlwI	GGATC	2 cut(s)	509, 522
Ama87I	CYCGRG	2 cut(s)	75, 483
AoxI	GGCC	2 cut(s)	170, 766
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	3 cut(s)	59, 201, 694
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	2 cut(s)	171, 766
AsuHPI	GGTGA	2 cut(s)	728, 815
AvaI	CYCGRG	2 cut(s)	75, 483
BamHI	GGATCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	157, 253, 344
BciT130I	CCWGG	1 cut(s)	467
BcoDI	GTCTC	4 cut(s)	122, 530, 607, 743
BfaI	CTAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	774
BisI	GCNGC	4 cut(s)	6, 384, 625, 769
BlsI	GCNGC	4 cut(s)	7, 385, 626, 770
Bme1390I	CCNGG	1 cut(s)	467
BmeT110I	CYCGRG	2 cut(s)	75, 483
BmgT120I	GGNCC	2 cut(s)	171, 766
BmiI	GGNNCC	3 cut(s)	173, 516, 767
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	3 cut(s)	28, 278, 403
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	395
BsaI	GGTCTC	2 cut(s)	122, 607
BsaJI	CCNNGG	1 cut(s)	537
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 367, 631, 661, 764
Bse1I	ACTGG	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	537
BseLI	CCNNNNNNNGG	5 cut(s)	168, 367, 631, 661, 764
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	305, 677
BseXI	GCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	172, 768
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	2 cut(s)	75, 483
BslI	CCNNNNNNNGG	5 cut(s)	168, 367, 631, 661, 764
BsmAI	GTCTC	4 cut(s)	122, 530, 607, 743
BsmBI	CGTCTC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	172, 768
Bso31I	GGTCTC	2 cut(s)	122, 607
BsoBI	CYCGRG	2 cut(s)	75, 483
Bsp1286I	GDGCHC	2 cut(s)	297, 362
Bsp143I	GATC	2 cut(s)	514, 787
BspACI	CCGC	3 cut(s)	5, 625, 769
BspANI	GGCC	2 cut(s)	172, 768
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	717
BspHI	TCATGA	1 cut(s)	812
BspLI	GGNNCC	3 cut(s)	173, 516, 767
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	509, 522
BspTNI	GGTCTC	2 cut(s)	122, 607
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	2 cut(s)	514, 787
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	4 cut(s)	439, 460, 524, 634
Bst6I	CTCTTC	2 cut(s)	106, 246
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	228, 363, 711
BstFNI	CGCG	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	2 cut(s)	517, 790
BstMAI	GTCTC	4 cut(s)	122, 530, 607, 743
BstMBI	GATC	2 cut(s)	514, 787
BstMWI	GCNNNNNNNGC	3 cut(s)	307, 674, 774
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	717
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	172, 768
BtgZI	GCGATG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	386
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	447
CciI	TCATGA	1 cut(s)	812
CfoI	GCGC	1 cut(s)	717
Cfr13I	GGNCC	2 cut(s)	171, 766
CsiI	ACCWGGT	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	392, 463
CviAII	CATG	3 cut(s)	506, 584, 813
CviQI	GTAC	2 cut(s)	392, 463
DdeI	CTNAG	3 cut(s)	228, 363, 711
DpnI	GATC	2 cut(s)	516, 789
DpnII	GATC	2 cut(s)	514, 787
Eam1104I	CTCTTC	2 cut(s)	106, 246
EarI	CTCTTC	2 cut(s)	106, 246
Eco24I	GRGCYC	1 cut(s)	362
Eco31I	GGTCTC	2 cut(s)	122, 607
Eco57I	CTGAAG	1 cut(s)	704
Eco88I	CYCGRG	2 cut(s)	75, 483
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	362
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	3 cut(s)	509, 587, 816
FaiI	YATR	5 cut(s)	401, 501, 507, 585, 814
FalI	AAGNNNNNCTT	4 cut(s)	359, 391, 545, 577
FatI	CATG	3 cut(s)	505, 583, 812
Fnu4HI	GCNGC	4 cut(s)	6, 384, 625, 769
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	4 cut(s)	6, 384, 625, 769
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	4 cut(s)	6, 384, 625, 769
HaeIII	GGCC	2 cut(s)	172, 768
HhaI	GCGC	1 cut(s)	717
Hin1II	CATG	3 cut(s)	509, 587, 816
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	2 cut(s)	256, 558
HphI	GGTGA	2 cut(s)	728, 815
Hpy166II	GTNNAC	3 cut(s)	373, 463, 794
Hpy188III	TCNNGA	5 cut(s)	213, 518, 785, 791, 813
Hpy8I	GTNNAC	3 cut(s)	373, 463, 794
HpyAV	CCTTC	3 cut(s)	185, 361, 679
HpyCH4III	ACNGT	4 cut(s)	439, 460, 524, 634
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	7 cut(s)	25, 144, 386, 416, 424, 430, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	307, 674, 774
HpyF3I	CTNAG	3 cut(s)	228, 363, 711
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	509, 587, 816
HspAI	GCGC	1 cut(s)	715
Kzo9I	GATC	2 cut(s)	514, 787
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	8 cut(s)	273, 333, 374, 452, 479, 531, 630, 669
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	3 cut(s)	28, 278, 403
MabI	ACCWGGT	1 cut(s)	465
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	65, 433
MalI	GATC	2 cut(s)	516, 789
MboI	GATC	2 cut(s)	514, 787
MboII	GAAGA	7 cut(s)	84, 87, 93, 144, 233, 422, 553
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	297, 362
MluCI	AATT	6 cut(s)	42, 59, 82, 201, 694, 759
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	3 cut(s)	182, 492, 529
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	3 cut(s)	341, 690, 702
MslI	CAYNNNNRTG	2 cut(s)	504, 704
MspR9I	CCNGG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	717
MwoI	GCNNNNNNNGC	3 cut(s)	307, 674, 774
NdeII	GATC	2 cut(s)	514, 787
NlaIII	CATG	3 cut(s)	509, 587, 816
NlaIV	GGNNCC	3 cut(s)	173, 516, 767
NmeAIII	GCCGAG	1 cut(s)	562
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	418
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	812
PcsI	WCGNNNNNNNCGW	1 cut(s)	400
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	1 cut(s)	558
PkrI	GCNGC	4 cut(s)	7, 385, 626, 770
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	3 cut(s)	173, 516, 767
PspPI	GGNCC	2 cut(s)	171, 766
PspXI	VCTCGAGB	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	2 cut(s)	393, 464
RsaNI	GTAC	2 cut(s)	392, 463
RseI	CAYNNNNRTG	2 cut(s)	504, 704
SaqAI	TTAA	3 cut(s)	341, 690, 702
SatI	GCNGC	4 cut(s)	6, 384, 625, 769
Sau3AI	GATC	2 cut(s)	514, 787
Sau96I	GGNCC	2 cut(s)	171, 766
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	297, 362
SexAI	ACCWGGT	1 cut(s)	465
SfaNI	GCATC	3 cut(s)	28, 278, 403
Sfr274I	CTCGAG	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	504, 704
SmlI	CTYRAG	2 cut(s)	75, 220
SmoI	CTYRAG	2 cut(s)	75, 220
Sse9I	AATT	6 cut(s)	42, 59, 82, 201, 694, 759
SsiI	CCGC	3 cut(s)	5, 625, 769
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	439, 460, 524, 634
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	76, 212
TasI	AATT	6 cut(s)	42, 59, 82, 201, 694, 759
TauI	GCSGC	3 cut(s)	8, 627, 771
TfiI	GAWTC	1 cut(s)	558
Tru1I	TTAA	3 cut(s)	341, 690, 702
Tru9I	TTAA	3 cut(s)	341, 690, 702
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	5 cut(s)	167, 299, 464, 688, 801
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	393
XapI	RAATTY	3 cut(s)	59, 201, 694
XhoI	CTCGAG	1 cut(s)	75
XspI	CTAG	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.