Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002533

Physical Location & Seq

Genomic Coordinates Reverse (-)

3038911 .. 3041268

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCGGCTTGGCAGAGGCATCTGCAATCAGCAATCCGGAAAATGGGCAAAAGGGTTGAATGTAGTTACAACCCTTCAGCCAATTTCTCTTCTTCTTCTTCCTCTTCTCGCTTGGAGGGTCTCTTGCCTTATTTCCAAACTCTTTGCAAGCCATCTTCTCCAACCATTTCAAGACCCCTTCATCAATATTTTCAGCACTTGGGAATTTCGAGTTCAAGGAATTTGAGAGCTGAGGAAGCGCCTCTTCCCTCTCCATTGACTCCTGTTTTGGCATCAAATACTGCGACAAACGAAGAGCACAAGCAGAAATCGCTCACTAAACCTGATAAAGTTCAAGCTATCTTAAAGGGCATCAAACAGAGTCCTAAAAAGGTCAACTTGGTTGCTGCACTGGTACGCGGTATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACAGTAAAGCGAGCTTCAAAAACTGTGTATCAGGTCATTCATTCAGCCCGAGCAAATGCAACTCATAATCATGGGTTAGATCCAGACCGTCTCCTTGTTGCTGAGGCTTTTGTTGGAAAGGGATTCTTCAAAAAGAGACTGTCCTACCATGCTAAAGGCAAATGTGGAGTTAAAGTGAGACCAGAATGCCGCCTTACGGTCGTAGTAAGGGAGATTACCCCTGACGAGGAGGCGGAGATAGCCAAACTGAAGGTTAAGAATTTCATTAAGATGACTAAGCGCGAAAGAAAGCTTGTTCCTCACCAGCTTATTGAGACAACTCCAATTTGGGGCCGCAAAGGCAGAAATTGCGATCGTGAACGAAATGGTGAGGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

273

Amino Acids

30.49

Weight (kDa)

10.2

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52370 AT1G52370 AT1G52370 AT1G52370 AT4G28360
fragaria_vesca	FvH4_6g20730 FvH4_6g20730
malus_domestica	MD12G1043300.v1.1 MD12G1043400.v1.1 MD14G1042400.v1.1
prunus_persica	Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1 Prupe.7G091500_v2.0.a1
pyrus_communis	pycom12g03740 pycom14g03610
rosa_chinensis	RchiOBHm_Chr3g0476631 RchiOBHm_Chr7g0223381
rosa_laevigata	RLG00000001980
rosa_multiflora	Rmu_sc0008241.1_g000012 Rmu_sc0009107.1_g000009 Rmu_sc0022781.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235860 Rroxscaffold_6G00405140
rosa_rugosa	Rorug03G0156000 Rorug03G0156000 Rorug03G0156000 Rorug03G0156100 Rorug03G0156200 Rorug07G0216400 Rorug07G0216400
rosa_samantha	Rh3AG206400 Rh3BG238800 Rh3CG232700 Rh3DG232700 Rh7AG360100 Rh7BG350100 Rh7CG378500 Rh7DG355300
rosa_wichuraiana	Rw3G018800 Rw7G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	399, 720
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	5 cut(s)	5, 399, 628, 671, 772
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	3 cut(s)	204, 220, 697
AcuI	CTGAAG	2 cut(s)	60, 707
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	4 cut(s)	43, 634, 664, 767
AgsI	TTSAA	7 cut(s)	59, 171, 216, 335, 413, 456, 568
AluBI	AGCT	5 cut(s)	230, 338, 452, 730, 745
AluI	AGCT	5 cut(s)	230, 338, 452, 730, 745
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	5 cut(s)	125, 533, 568, 610, 746
AlwI	GGATC	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	486
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	1 cut(s)	769
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	3 cut(s)	204, 220, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspLEI	GCGC	2 cut(s)	241, 720
AspS9I	GGNCC	1 cut(s)	769
AsuHPI	GGTGA	2 cut(s)	731, 818
AvaI	CYCGRG	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	300
BbvCI	CCTCAGC	2 cut(s)	231, 540
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	160
BcoDI	GTCTC	5 cut(s)	125, 533, 568, 610, 746
BfoI	RGCGCY	1 cut(s)	242
BglI	GCCNNNNNGGC	1 cut(s)	777
BisI	GCNGC	4 cut(s)	6, 387, 628, 772
BlsI	GCNGC	4 cut(s)	7, 388, 629, 773
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	1 cut(s)	770
BmsI	GCATC	4 cut(s)	28, 281, 360, 406
Bpu10I	CCTNAGC	2 cut(s)	231, 540
BsaI	GGTCTC	2 cut(s)	125, 610
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 634, 664, 767
Bse1I	ACTGG	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	36
BseLI	CCNNNNNNNGG	4 cut(s)	43, 634, 664, 767
BseMII	CTCAG	2 cut(s)	222, 531
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	680
BseXI	GCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	2 cut(s)	399, 720
Bsh1285I	CGRYCG	2 cut(s)	639, 793
BshFI	GGCC	1 cut(s)	771
BsiEI	CGRYCG	2 cut(s)	639, 793
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	37
BslI	CCNNNNNNNGG	4 cut(s)	43, 634, 664, 767
BsmAI	GTCTC	5 cut(s)	125, 533, 568, 610, 746
BsmBI	CGTCTC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	1 cut(s)	771
Bso31I	GGTCTC	2 cut(s)	125, 610
BsoBI	CYCGRG	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	517, 790
BspACI	CCGC	5 cut(s)	5, 399, 628, 671, 772
BspANI	GGCC	1 cut(s)	771
BspCNI	CTCAG	2 cut(s)	223, 532
BspEI	TCCGGA	1 cut(s)	36
BspFNI	CGCG	2 cut(s)	399, 720
BspHI	TCATGA	1 cut(s)	815
BspLI	GGNNCC	1 cut(s)	770
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	2 cut(s)	125, 610
BsrI	ACTGG	1 cut(s)	396
BssMI	GATC	2 cut(s)	517, 790
Bst4CI	ACNGT	5 cut(s)	442, 463, 527, 579, 637
Bst6I	CTCTTC	4 cut(s)	94, 109, 249, 288
BstAPI	GCANNNNNTGC	1 cut(s)	786
BstC8I	GCNNGC	2 cut(s)	149, 450
BstDEI	CTNAG	3 cut(s)	231, 540, 714
BstFNI	CGCG	2 cut(s)	399, 720
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	241, 720
BstKTI	GATC	2 cut(s)	520, 793
BstMAI	GTCTC	5 cut(s)	125, 533, 568, 610, 746
BstMBI	GATC	2 cut(s)	517, 790
BstMCI	CGRYCG	2 cut(s)	639, 793
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 310, 677, 777, 786
BstUI	CGCG	2 cut(s)	399, 720
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	771
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	149, 450
CciI	TCATGA	1 cut(s)	815
CfoI	GCGC	2 cut(s)	241, 720
Cfr13I	GGNCC	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	3 cut(s)	509, 587, 816
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	3 cut(s)	231, 540, 714
DpnI	GATC	2 cut(s)	519, 792
DpnII	GATC	2 cut(s)	517, 790
Eam1104I	CTCTTC	4 cut(s)	94, 109, 249, 288
EarI	CTCTTC	4 cut(s)	94, 109, 249, 288
EciI	GGCGGA	1 cut(s)	686
Eco31I	GGTCTC	2 cut(s)	125, 610
Eco57I	CTGAAG	2 cut(s)	60, 707
Eco88I	CYCGRG	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	3 cut(s)	512, 590, 819
FaiI	YATR	5 cut(s)	404, 504, 510, 588, 817
FalI	AAGNNNNNCTT	6 cut(s)	228, 260, 362, 394, 548, 580
FatI	CATG	3 cut(s)	508, 586, 815
Fnu4HI	GCNGC	4 cut(s)	6, 387, 628, 772
Fsp4HI	GCNGC	4 cut(s)	6, 387, 628, 772
GlaI	GCGC	2 cut(s)	240, 719
GluI	GCNGC	4 cut(s)	6, 387, 628, 772
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	771
HapII	CCGG	1 cut(s)	37
HhaI	GCGC	2 cut(s)	241, 720
Hin1II	CATG	3 cut(s)	512, 590, 819
Hin6I	GCGC	2 cut(s)	239, 718
HinP1I	GCGC	2 cut(s)	239, 718
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	3 cut(s)	259, 361, 561
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	2 cut(s)	731, 818
Hpy166II	GTNNAC	2 cut(s)	376, 797
Hpy188III	TCNNGA	5 cut(s)	37, 171, 521, 794, 816
Hpy8I	GTNNAC	2 cut(s)	376, 797
HpyAV	CCTTC	3 cut(s)	84, 188, 682
HpyCH4III	ACNGT	5 cut(s)	442, 463, 527, 579, 637
HpyCH4V	TGCA	7 cut(s)	25, 147, 389, 419, 427, 433, 497
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 310, 677, 777, 786
HpyF3I	CTNAG	3 cut(s)	231, 540, 714
Hsp92II	CATG	3 cut(s)	512, 590, 819
HspAI	GCGC	2 cut(s)	239, 718
Kpn2I	TCCGGA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	517, 790
LguI	GCTCTTC	1 cut(s)	288
LpnPI	CCDG	9 cut(s)	50, 276, 336, 377, 455, 534, 633, 672, 755
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	4 cut(s)	28, 281, 360, 406
MaeIII	GTNAC	2 cut(s)	65, 436
MalI	GATC	2 cut(s)	519, 792
MboI	GATC	2 cut(s)	517, 790
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	6 cut(s)	82, 204, 220, 697, 762, 784
MlyI	GAGTC	2 cut(s)	253, 370
MmeI	TCCRAC	2 cut(s)	185, 532
Mph1103I	ATGCAT	1 cut(s)	421
MroI	TCCGGA	1 cut(s)	36
MseI	TTAA	4 cut(s)	344, 609, 693, 705
MslI	CAYNNNNRTG	2 cut(s)	507, 707
MspI	CCGG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	629
MvnI	CGCG	2 cut(s)	399, 720
MwoI	GCNNNNNNNGC	5 cut(s)	236, 310, 677, 777, 786
NdeII	GATC	2 cut(s)	517, 790
NlaIII	CATG	3 cut(s)	512, 590, 819
NlaIV	GGNNCC	1 cut(s)	770
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	421
PagI	TCATGA	1 cut(s)	815
PciSI	GCTCTTC	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	561
PkrI	GCNGC	4 cut(s)	7, 388, 629, 773
Ple19I	CGATCG	1 cut(s)	793
PleI	GAGTC	2 cut(s)	253, 369
PpsI	GAGTC	2 cut(s)	253, 369
PspN4I	GGNNCC	1 cut(s)	770
PspPI	GGNCC	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	517
PvuI	CGATCG	1 cut(s)	793
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	2 cut(s)	507, 707
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	344, 609, 693, 705
SatI	GCNGC	4 cut(s)	6, 387, 628, 772
Sau3AI	GATC	2 cut(s)	517, 790
Sau96I	GGNCC	1 cut(s)	769
SchI	GAGTC	2 cut(s)	253, 370
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	9 cut(s)	232, 325, 340, 375, 454, 474, 693, 732, 747
SfaNI	GCATC	4 cut(s)	28, 281, 360, 406
SmiMI	CAYNNNNRTG	2 cut(s)	507, 707
Sse9I	AATT	6 cut(s)	82, 204, 220, 697, 762, 784
SsiI	CCGC	5 cut(s)	5, 399, 628, 671, 772
SspI	AATATT	1 cut(s)	188
TaaI	ACNGT	5 cut(s)	442, 463, 527, 579, 637
TaqI	TCGA	1 cut(s)	209
TasI	AATT	6 cut(s)	82, 204, 220, 697, 762, 784
TauI	GCSGC	3 cut(s)	8, 630, 774
TfiI	GAWTC	1 cut(s)	561
Tru1I	TTAA	4 cut(s)	344, 609, 693, 705
Tru9I	TTAA	4 cut(s)	344, 609, 693, 705
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	4 cut(s)	170, 467, 691, 804
TspRI	CASTG	1 cut(s)	396
XapI	RAATTY	3 cut(s)	204, 220, 697
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.