Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005336

Physical Location & Seq

Genomic Coordinates Reverse (-)

20507375 .. 20508355

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAAGAAAAAGATTCTGCCGATCACTTTACAAGTGGCAGTTTTGTTACAATTTCTCATAGTGTCTGCTTCGGCCTTGACCTCCACAAAATACATAGATAAATTATGTGAGATGCAATCCGTTGAAGACAAAACCTTTTGTTTGCAAACGTTGAGCGCCAATCCTCTTGCGGCTTCCGCCACTGGCTTGCTCCCACTTGCGGAAGTCGTGATCAGGGGCATTGACTTACCCTATGCCAAGTTGTTGGTGAAATCTGCAGATAGAGCAATAGAAAAGATACCGGCTCTGAAGGAACAGTTCAAGGAGTGCCAAGATTCCTTCCTTCGCATAGTAATGTCTCTCAAGAGTGCTGCTTCAGAGCTCAAGGTATCTCCAGACACCGCCAACTATGATGCTATGATTTGTTTCGACGAAACAAAGCGAGTGAAGGAGGTGATCGGGAAAAACGAAGACGTGACTTCGAAGAGTCTCATAGAGATGACATTGCGTATGGAGAAGCTCATTTTTCTTGCTCTTGGAGCCACCGAAGTTGTTGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

180

Amino Acids

19.73

Weight (kDa)

7.57

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54980 AT2G10970 AT4G24640 AT5G50030 AT5G50040 AT5G50050 AT5G50060 AT5G50070
fragaria_vesca	FvH4_2g13220
malus_domestica	MD10G1032400.v1.1 MD10G1032600.v1.1 MD10G1032700.v1.1
prunus_persica	Prupe.8G038100_v2.0.a1
pyrus_communis	pycom03g09400 pycom05g02200 pycom05g02210 pycom10g02080
rosa_chinensis	RchiOBHm_Chr6g0274541
rosa_laevigata	RLG00000013535
rosa_multiflora	Rmu_co8136600.1_g000001 Rmu_sc0006850.1_g000013 Rmu_sc0006999.1_g000013
rosa_roxburghii	Rroxscaffold_7G00194110 Rroxscaffold_7G00194170
rosa_rugosa	Rorug06G0082300
rosa_samantha	Rh6AG198600 Rh6BG201900 Rh6DG193700
rosa_wichuraiana	Rw6G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	170, 177, 200, 381
AclI	AACGTT	1 cut(s)	149
AcuI	CTGAAG	2 cut(s)	308, 339
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	125, 301
AjiI	CACGTC	1 cut(s)	454
AluBI	AGCT	2 cut(s)	361, 499
AluI	AGCT	2 cut(s)	361, 499
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	342, 473
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	259, 445
AsuII	TTCGAA	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	132, 456
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	337
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	342, 473
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	2 cut(s)	171, 351
BlsI	GCNGC	2 cut(s)	172, 352
BmgBI	CACGTC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	520
BmsI	GCATC	2 cut(s)	102, 382
BpiI	GAAGAC	2 cut(s)	132, 456
BpmI	CTGGAG	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	2 cut(s)	326, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	342, 473
BsnI	GGCC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	21, 210, 435
BspACI	CCGC	4 cut(s)	170, 177, 200, 381
BspANI	GGCC	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	520
BspMAI	CTGCAG	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	482
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	280
BssMI	GATC	3 cut(s)	21, 210, 435
Bst4CI	ACNGT	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	3 cut(s)	24, 213, 438
BstMAI	GTCTC	2 cut(s)	342, 473
BstMBI	GATC	3 cut(s)	21, 210, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 263, 518
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	2 cut(s)	132, 456
BstXI	CCANNNNNNTGG	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	74
BtrI	CACGTC	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	280
CspCI	CAANNNNNGTGG	1 cut(s)	511
CviJI	RGCY	7 cut(s)	74, 173, 186, 284, 361, 499, 521
CviKI_1	RGCY	7 cut(s)	74, 173, 186, 284, 361, 499, 521
DpnI	GATC	3 cut(s)	23, 212, 437
DpnII	GATC	3 cut(s)	21, 210, 435
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EciI	GGCGGA	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	2 cut(s)	308, 339
EcoICRI	GAGCTC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	363
FaiI	YATR	9 cut(s)	59, 95, 106, 234, 329, 390, 398, 473, 491
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	171, 351
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	171, 351
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	2 cut(s)	171, 351
GsuI	CTGGAG	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	3 cut(s)	13, 314, 466
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	2 cut(s)	259, 445
Hpy188I	TCNGA	2 cut(s)	288, 358
Hpy188III	TCNNGA	4 cut(s)	208, 343, 374, 439
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	4 cut(s)	283, 328, 332, 421
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	2 cut(s)	149, 453
HpyCH4V	TGCA	3 cut(s)	115, 145, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 263, 518
HpySE526I	ACGT	2 cut(s)	149, 453
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	21, 210, 435
LmnI	GCTCC	2 cut(s)	195, 518
LpnPI	CCDG	4 cut(s)	168, 199, 294, 387
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	102, 382
MaeII	ACGT	2 cut(s)	149, 453
MaeIII	GTNAC	2 cut(s)	45, 454
MalI	GATC	3 cut(s)	23, 212, 437
MboI	GATC	3 cut(s)	21, 210, 435
MboII	GAAGA	4 cut(s)	16, 137, 461, 475
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	2 cut(s)	50, 101
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	91, 174, 424, 530
MslI	CAYNNNNRTG	2 cut(s)	332, 476
MspI	CCGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	176, 263, 518
NdeII	GATC	3 cut(s)	21, 210, 435
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	13, 314
PkrI	GCNGC	2 cut(s)	172, 352
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	363
Psp1406I	AACGTT	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	332, 476
SacI	GAGCTC	1 cut(s)	363
SatI	GCNGC	2 cut(s)	171, 351
Sau3AI	GATC	3 cut(s)	21, 210, 435
SchI	GAGTC	1 cut(s)	475
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	8 cut(s)	83, 137, 152, 363, 369, 435, 456, 501
SfaNI	GCATC	2 cut(s)	102, 382
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	332, 476
SmlI	CTYRAG	2 cut(s)	341, 362
SmoI	CTYRAG	2 cut(s)	341, 362
Sse9I	AATT	2 cut(s)	50, 101
SsiI	CCGC	4 cut(s)	170, 177, 200, 381
SstI	GAGCTC	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	2 cut(s)	152, 456
TaqI	TCGA	2 cut(s)	408, 461
TasI	AATT	2 cut(s)	50, 101
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	13, 314
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.