Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005336

Physical Location & Seq

Genomic Coordinates Forward (+)

35926659 .. 35941569

Gene Structure 14911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTCTCCGGCCACCACTTCTTGCCACCTCCACCATTGCGTGAACCAGCTTCCACTTCCGAGCAAGACCTAAGCTCAACACAGCCTTGCATCAACTTCAGCCTCCACACGCTCCCTTCAAGTCCGAAGTGCAGCTGCTCCTCCAAGATCACCGATAATGGAAAGGATAGCCATGGATTTAAGGACGGTGTGGTCAACCTTGAATGCAAGCTCTCGATCGAGGCAATTGCAGGCCACAAAATTGAGAGTGAAATTCCTTTTCGAATAGCTCTTTTTGGTTTTGGAGAATGCAAGGTAGAAGATGAAGAGTATGTAGAAAATGACCCAAGTAAGAAATTGACAGAGTCGACACCAAGAATTAACTTCCGATCTCGGTCTCTACGAACGAACACCACGGATCTCCATCTCCGGCCGGCGTCTCTCTCAACCATCTCCGACGTCTCCCTCTTCTCCGACGTCTCTCTCTTCTCGGGGCTCCTATTGGACTTCCAAAGAATCAGAGAGGAGCTGAACAAGGACCCTATGACGGCCAACTATGACATTAAAATAGCGGTCGCTGACGATATAGATCGGTGCAAAACTGCGATGCAAGCTGGGGTTCAAGTTCCTGAAATATCTTCAAGAAACCAACTCGTCTACTTGTATAGTGACATTGGAGCTGTTATAACCAATAAGCTTTTAGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

229

Amino Acids

25.33

Weight (kDa)

5.39

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54980 AT2G10970 AT4G24640 AT5G50030 AT5G50040 AT5G50050 AT5G50060 AT5G50070
fragaria_vesca	FvH4_2g13220
malus_domestica	MD10G1032400.v1.1 MD10G1032600.v1.1 MD10G1032700.v1.1
prunus_persica	Prupe.8G038100_v2.0.a1
pyrus_communis	pycom03g09400 pycom05g02200 pycom05g02210 pycom10g02080
rosa_chinensis	RchiOBHm_Chr6g0274541
rosa_laevigata	RLG00000013535
rosa_multiflora	Rmu_co8136600.1_g000001 Rmu_sc0006850.1_g000013 Rmu_sc0006999.1_g000013
rosa_roxburghii	Rroxscaffold_7G00194110 Rroxscaffold_7G00194170
rosa_rugosa	Rorug06G0082300
rosa_samantha	Rh6AG198600 Rh6BG201900 Rh6DG193700
rosa_wichuraiana	Rw6G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	665
AasI	GACNNNNNNGTC	1 cut(s)	191
AatII	GACGTC	2 cut(s)	441, 459
AccI	GTMKAC	2 cut(s)	347, 636
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	3 cut(s)	10, 410, 528
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	82
AcyI	GRCGYC	3 cut(s)	416, 438, 456
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	4 cut(s)	120, 203, 602, 621
AluBI	AGCT	9 cut(s)	50, 75, 135, 211, 269, 508, 593, 659, 676
AluI	AGCT	9 cut(s)	50, 75, 135, 211, 269, 508, 593, 659, 676
Alw26I	GTCTC	5 cut(s)	10, 381, 423, 445, 463
AlwI	GGATC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	469
AoxI	GGCC	4 cut(s)	10, 232, 410, 528
ApeKI	GCWGC	2 cut(s)	132, 135
ApoI	RAATTY	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	122, 144
BccI	CCATC	2 cut(s)	411, 437
BceAI	ACGGC	1 cut(s)	543
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BcoDI	GTCTC	5 cut(s)	10, 381, 423, 445, 463
BisI	GCNGC	2 cut(s)	133, 136
BlsI	GCNGC	2 cut(s)	134, 137
Bme18I	GGWCC	1 cut(s)	517
BmeT110I	CYCGRG	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	476, 519
BmsI	GCATC	2 cut(s)	99, 576
Bpu10I	CCTNAGC	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	262
BsaBI	GATNNNNATC	2 cut(s)	402, 567
BsaHI	GRCGYC	3 cut(s)	416, 438, 456
BsaI	GGTCTC	2 cut(s)	10, 381
BsaJI	CCNNGG	2 cut(s)	172, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	35
Bse8I	GATNNNNATC	2 cut(s)	402, 567
BseDI	CCNNGG	2 cut(s)	172, 393
BseJI	GATNNNNATC	2 cut(s)	402, 567
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	35
BseRI	GAGGAG	2 cut(s)	130, 518
BseX3I	CGGCCG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	122, 144
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	1 cut(s)	151
Bsh1285I	CGRYCG	3 cut(s)	219, 413, 555
BshFI	GGCC	4 cut(s)	12, 234, 412, 530
BsiEI	CGRYCG	3 cut(s)	219, 413, 555
BsiHKCI	CYCGRG	1 cut(s)	469
BsiSI	CCGG	3 cut(s)	9, 409, 413
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	5 cut(s)	10, 381, 423, 445, 463
BsmBI	CGTCTC	3 cut(s)	423, 445, 463
BsmI	GAATGC	2 cut(s)	209, 293
BsnI	GGCC	4 cut(s)	12, 234, 412, 530
Bso31I	GGTCTC	2 cut(s)	10, 381
BsoBI	CYCGRG	1 cut(s)	469
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	5 cut(s)	147, 216, 368, 397, 568
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	4 cut(s)	12, 234, 412, 530
BspLI	GGNNCC	2 cut(s)	476, 519
BspPI	GGATC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	262
BspTNI	GGTCTC	2 cut(s)	10, 381
BsrDI	GCAATG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	172, 393
BssMI	GATC	5 cut(s)	147, 216, 368, 397, 568
BssNI	GRCGYC	3 cut(s)	416, 438, 456
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	3 cut(s)	300, 452, 470
BstACI	GRCGYC	3 cut(s)	416, 438, 456
BstBI	TTCGAA	1 cut(s)	262
BstC8I	GCNNGC	4 cut(s)	209, 232, 414, 591
BstDEI	CTNAG	1 cut(s)	71
BstDSI	CCRYGG	2 cut(s)	172, 393
BstKTI	GATC	5 cut(s)	150, 219, 371, 400, 571
BstMAI	GTCTC	5 cut(s)	10, 381, 423, 445, 463
BstMBI	GATC	5 cut(s)	147, 216, 368, 397, 568
BstMCI	CGRYCG	3 cut(s)	219, 413, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstV1I	GCAGC	2 cut(s)	122, 144
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BstZI	CGGCCG	1 cut(s)	410
BsuRI	GGCC	4 cut(s)	12, 234, 412, 530
BtgI	CCRYGG	2 cut(s)	172, 393
BtgZI	GCGATG	1 cut(s)	599
Cac8I	GCNNGC	4 cut(s)	209, 232, 414, 591
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	517
CseI	GACGC	1 cut(s)	405
CviAII	CATG	1 cut(s)	173
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	5 cut(s)	149, 218, 370, 399, 570
DpnII	GATC	5 cut(s)	147, 216, 368, 397, 568
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	3 cut(s)	10, 410, 528
EagI	CGGCCG	1 cut(s)	410
Eam1104I	CTCTTC	3 cut(s)	300, 452, 470
EarI	CTCTTC	3 cut(s)	300, 452, 470
EclXI	CGGCCG	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	477
Eco31I	GGTCTC	2 cut(s)	10, 381
Eco47I	GGWCC	1 cut(s)	517
Eco52I	CGGCCG	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	3 cut(s)	423, 445, 463
FaeI	CATG	1 cut(s)	176
FaiI	YATR	7 cut(s)	174, 312, 524, 537, 566, 645, 665
FatI	CATG	1 cut(s)	172
FblI	GTMKAC	2 cut(s)	347, 636
Fnu4HI	GCNGC	2 cut(s)	133, 136
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	2 cut(s)	133, 136
GluI	GCNGC	2 cut(s)	133, 136
GsaI	CCCAGC	1 cut(s)	597
HaeIII	GGCC	4 cut(s)	12, 234, 412, 530
HapII	CCGG	3 cut(s)	9, 409, 413
HgaI	GACGC	1 cut(s)	405
Hin1I	GRCGYC	3 cut(s)	416, 438, 456
Hin1II	CATG	1 cut(s)	176
HincII	GTYRAC	2 cut(s)	196, 348
HindII	GTYRAC	2 cut(s)	196, 348
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	2 cut(s)	344, 495
HpaII	CCGG	3 cut(s)	9, 409, 413
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	4 cut(s)	44, 196, 348, 637
Hpy188I	TCNGA	6 cut(s)	61, 126, 368, 436, 454, 500
Hpy188III	TCNNGA	3 cut(s)	214, 608, 621
Hpy8I	GTNNAC	4 cut(s)	44, 196, 348, 637
Hpy99I	CGWCG	2 cut(s)	440, 458
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	438, 456
HpyCH4V	TGCA	7 cut(s)	90, 132, 207, 230, 291, 576, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	2 cut(s)	438, 456
Hsp92I	GRCGYC	3 cut(s)	416, 438, 456
Hsp92II	CATG	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
Kzo9I	GATC	5 cut(s)	147, 216, 368, 397, 568
LmnI	GCTCC	5 cut(s)	117, 143, 480, 505, 656
LpnPI	CCDG	7 cut(s)	22, 60, 216, 422, 426, 579, 621
Lsp1109I	GCAGC	2 cut(s)	122, 144
LweI	GCATC	2 cut(s)	99, 576
MaeII	ACGT	2 cut(s)	438, 456
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	5 cut(s)	149, 218, 370, 399, 570
MboI	GATC	5 cut(s)	147, 216, 368, 397, 568
MboII	GAAGA	5 cut(s)	311, 317, 439, 457, 609
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	6 cut(s)	225, 240, 252, 335, 357, 685
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	459, 477
MnlI	CCTC	6 cut(s)	39, 113, 151, 214, 455, 496
MroNI	GCCGGC	1 cut(s)	412
MseI	TTAA	4 cut(s)	180, 360, 543, 684
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	3 cut(s)	9, 409, 413
MunI	CAATTG	1 cut(s)	225
Mva1269I	GAATGC	2 cut(s)	209, 293
MwoI	GCNNNNNNNGC	1 cut(s)	590
NaeI	GCCGGC	1 cut(s)	414
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	5 cut(s)	147, 216, 368, 397, 568
NgoMIV	GCCGGC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	2 cut(s)	476, 519
NmuCI	GTSAC	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	379
PctI	GAATGC	2 cut(s)	209, 293
PdiI	GCCGGC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	495
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	134, 137
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PpuMI	RGGWCCY	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	593
PspN4I	GGNNCC	2 cut(s)	476, 519
PspPI	GGNCC	1 cut(s)	517
PspPPI	RGGWCCY	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	346
SaqAI	TTAA	4 cut(s)	180, 360, 543, 684
SatI	GCNGC	2 cut(s)	133, 136
Sau3AI	GATC	5 cut(s)	147, 216, 368, 397, 568
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	99, 576
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	1 cut(s)	517
Sse9I	AATT	6 cut(s)	225, 240, 252, 335, 357, 685
SsiI	CCGC	1 cut(s)	551
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	2 cut(s)	441, 459
TaqI	TCGA	4 cut(s)	215, 219, 262, 347
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	6 cut(s)	225, 240, 252, 335, 357, 685
TfiI	GAWTC	1 cut(s)	495
Tru1I	TTAA	4 cut(s)	180, 360, 543, 684
Tru9I	TTAA	4 cut(s)	180, 360, 543, 684
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	2 cut(s)	132, 135
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	410
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	1 cut(s)	252
XmiI	GTMKAC	2 cut(s)	347, 636
ZraI	GACGTC	2 cut(s)	439, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.