Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005336

Physical Location & Seq

Genomic Coordinates Reverse (-)

3725038 .. 3725754

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G038100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGTCTCCACTTTCTTACGCCTTAGCATTCTTCTTTGCTTTGTTTTTATTTCTCTCTTCTTCTTCGTTAGCGAATGCATCGACTCAACTGATCGATGATGTTTGCAAAAACACCATAAACAACGCAGAATGCCTGAAAATTCTGGACTCCAATCCTCAAGCCCTATCAGCATCCAGTTACAAAGATCTTGCTCAAGTGGCTCTCGGGTTAGCCATAGCCAATGCAGAAGACAGCCAAACATTCATCAACAATTTGCTCAAGAGTGATCCAAGGGATGCTATCAAAAAGTGTGCTTCTTCATACAAAGCTGTGGTGGCATCGTTCAAAAGCTCGAAAGCTGAGATCGAGGAGGACCCTATGACGGCCAACTACGACGCCAAAATCGCAGGTGACGATGCCGGCAACTGCGAAACTGCCCTGAGTTCTCAAGGGGTTAAGGTTCCTGAGATATCTGCAAGAAACCATGTTGTCCAGTTCACATGTTTAATGCTTCTTCTAAGCCTAAGTTTGATTCCTGAATTGAAACTACCTATTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

181

Amino Acids

19.28

Weight (kDa)

4.73

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54980 AT2G10970 AT4G24640 AT5G50030 AT5G50040 AT5G50050 AT5G50060 AT5G50070
fragaria_vesca	FvH4_2g13220
malus_domestica	MD10G1032400.v1.1 MD10G1032600.v1.1 MD10G1032700.v1.1
prunus_persica	Prupe.8G038100_v2.0.a1
pyrus_communis	pycom03g09400 pycom05g02200 pycom05g02210 pycom10g02080
rosa_chinensis	RchiOBHm_Chr6g0274541
rosa_laevigata	RLG00000013535
rosa_multiflora	Rmu_co8136600.1_g000001 Rmu_sc0006850.1_g000013 Rmu_sc0006999.1_g000013
rosa_roxburghii	Rroxscaffold_7G00194110 Rroxscaffold_7G00194170
rosa_rugosa	Rorug06G0082300
rosa_samantha	Rh6AG198600 Rh6BG201900 Rh6DG193700
rosa_wichuraiana	Rw6G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	380
Acc36I	ACCTGC	1 cut(s)	380
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	328, 526
AluBI	AGCT	3 cut(s)	311, 333, 341
AluI	AGCT	3 cut(s)	311, 333, 341
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	237
BceAI	ACGGC	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	357, 444
BmsI	GCATC	5 cut(s)	89, 182, 268, 329, 388
BpiI	GAAGAC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	25
BpuEI	CTTGAG	4 cut(s)	144, 180, 245, 414
Bsa29I	ATCGAT	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	177, 475
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	173, 283
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	3 cut(s)	333, 413, 438
BseNI	ACTGG	2 cut(s)	177, 475
BseRI	GAGGAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	3 cut(s)	29, 82, 137
BsnI	GGCC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	93, 187, 268, 345
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	3 cut(s)	334, 414, 439
BspDI	ATCGAT	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	357, 444
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	177, 475
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	4 cut(s)	93, 187, 268, 345
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	6 cut(s)	25, 342, 422, 447, 500, 506
BstF5I	GGATG	2 cut(s)	173, 283
BstKTI	GATC	4 cut(s)	96, 190, 271, 348
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	93, 187, 268, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 200, 317, 386
BstNSI	RCATGY	1 cut(s)	486
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	368
BsuTUI	ATCGAT	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	173, 283
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	96
CseI	GACGC	1 cut(s)	386
CviAII	CATG	2 cut(s)	467, 483
DdeI	CTNAG	6 cut(s)	25, 342, 422, 447, 500, 506
DpnI	GATC	4 cut(s)	95, 189, 270, 347
DpnII	GATC	4 cut(s)	93, 187, 268, 345
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	272
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	2 cut(s)	470, 486
FaiI	YATR	6 cut(s)	119, 218, 304, 362, 468, 484
FatI	CATG	2 cut(s)	466, 482
FokI	GGATG	2 cut(s)	160, 290
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	1 cut(s)	386
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	470, 486
HinfI	GANTC	4 cut(s)	5, 85, 149, 514
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188III	TCNNGA	4 cut(s)	146, 262, 446, 518
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	1 cut(s)	380
HpyCH4V	TGCA	4 cut(s)	80, 108, 227, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 200, 317, 386
HpyF3I	CTNAG	6 cut(s)	25, 342, 422, 447, 500, 506
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	470, 486
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	93, 187, 268, 345
LpnPI	CCDG	9 cut(s)	131, 149, 190, 375, 415, 434, 459, 488, 531
LweI	GCATC	5 cut(s)	89, 182, 268, 329, 388
MaeIII	GTNAC	2 cut(s)	179, 392
MalI	GATC	4 cut(s)	95, 189, 270, 347
MboI	GATC	4 cut(s)	93, 187, 268, 345
MboII	GAAGA	7 cut(s)	25, 51, 54, 57, 242, 291, 488
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	3 cut(s)	141, 253, 521
MlyI	GAGTC	3 cut(s)	14, 79, 143
MnlI	CCTC	3 cut(s)	168, 343, 346
Mph1103I	ATGCAT	1 cut(s)	82
MroNI	GCCGGC	1 cut(s)	401
MseI	TTAA	2 cut(s)	438, 488
MspI	CCGG	1 cut(s)	402
Mva1269I	GAATGC	3 cut(s)	29, 82, 137
MwoI	GCNNNNNNNGC	4 cut(s)	170, 200, 317, 386
NaeI	GCCGGC	1 cut(s)	403
NdeII	GATC	4 cut(s)	93, 187, 268, 345
NgoMIV	GCCGGC	1 cut(s)	401
NlaIII	CATG	2 cut(s)	470, 486
NlaIV	GGNNCC	2 cut(s)	357, 444
NmuCI	GTSAC	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	486
PaqCI	CACCTGC	1 cut(s)	380
PciI	ACATGT	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	3 cut(s)	29, 82, 137
PdiI	GCCGGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	514
PleI	GAGTC	3 cut(s)	13, 79, 143
PpsI	GAGTC	3 cut(s)	13, 79, 143
PpuMI	RGGWCCY	1 cut(s)	355
PscI	ACATGT	1 cut(s)	482
Psp5II	RGGWCCY	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	357, 444
PspPI	GGNCC	1 cut(s)	355
PspPPI	RGGWCCY	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	438, 488
Sau3AI	GATC	4 cut(s)	93, 187, 268, 345
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	3 cut(s)	14, 79, 143
SetI	ASST	6 cut(s)	313, 335, 343, 394, 444, 535
SfaNI	GCATC	5 cut(s)	89, 182, 268, 329, 388
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	4 cut(s)	159, 195, 260, 429
SmoI	CTYRAG	4 cut(s)	159, 195, 260, 429
Sse9I	AATT	3 cut(s)	141, 253, 521
StyI	CCWWGG	1 cut(s)	272
TaqI	TCGA	4 cut(s)	83, 96, 335, 348
TasI	AATT	3 cut(s)	141, 253, 521
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	438, 488
Tru9I	TTAA	2 cut(s)	438, 488
TseFI	GTSAC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	235, 291
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	1 cut(s)	486
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.